4J9XA

Crystal structure of the complex of a hydroxyproline epimerase (target efi-506499, pseudomonas fluorescens pf-5) with trans-4-hydroxy-l-proline
Total Genus 84
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
84
sequence length
310
structure length
310
Chain Sequence
MKKITVIDSHTGGEPTRLVIDGFPDLGRGSMAERLQILEREHDQWRRACVLEPRGSDVLVGALLCQPQAGDACAGVIFFNNSGYLGMCGHGTIGLVRSLYHLGRIDQGVHRIETPVGTVEATLHEDLSVSVRNVPAYRYRTQVMLQLPGHGKVHGDIAWGGNWFFLISDHGQRIALDNVEALTHYTRDVRQALEAAGITGAEGGVIDHIELFADDPQADSRNFVLCPGKAYDRSPCGTGTSAKLACLAADGKLAPGQAWRQASVIGSQFSAHYEKVGEQLIPILRGSAHISAEATLLLDDSDPFVWGIGS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of the complex of a hydroxyproline epimerase (TARGET EFI-506499, PSEUDOMONAS FLUORESCENS PF-5) with trans-4-hydroxy-l-proline
rcsb
source organism Pseudomonas protegens
molecule tags Isomerase
molecule keywords Proline racemase family protein
total genus 84
structure length 310
sequence length 310
chains with identical sequence B
ec nomenclature ec 5.1.1.8: 4-hydroxyproline epimerase.
pdb deposition date 2013-02-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05544 Pro_racemase Proline racemase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 4j9xA02
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 4j9xA01
4JBDA 2Q9HA 1GQZA 2GKJA 1XUBA 1U1XA 2OTNA 1W62A 1BWZA 4IJZA 1SDJA 3EJXA 3FVEA 1U0KA 4K8LA 4LB0A 2Q9JA 4IK0A 4K7XA 3EDNA 1XUAA 1QYAA 1TM0A 1S7JA 4DUNA 5H2GA 4JD7A 5M47A 5HA4A 5H2YA 3EKMA 5IWEA 4J9WA 3G7KA 2GKEA 1W61A 2AZPA 2PW0A 2PVZA 4Q60A 1QY9A 1U1WA 4K7GB 4Q2HA 2H9FA 4JCIA 1YM5A 4J9XA 4JUUA 1T6KA 1U1VA
chains in the Genus database with same CATH superfamily
2Q9HA 1GQZA 1U1XA 4LG3A 5ANPA 3WQZA 3EJXA 1U0KA 2IW4A 1S7JA 4DUNA 2ENXA 4OA3A 3IGHX 2QB8A 3EKMA 5IWEA 2GKEA 2AZPA 3W5WA 2PVZA 3G98A 2YMAA 2H9FA 1K20A 1WPPA 1T6KA 2GKJA 1XUBA 2OTNA 4IJZA 4IK0A 3EDNA 1QYAA 1TM0A 3PW9A 2ZVFA 5H2GA 4JD7A 5HA4A 3G7KA 1QY9A 3PVHA 4Q2HA 1YM5A 2ZXOA 4RPAA 4JBDA 2KW7A 1W62A 1BWZA 4K8LA 4LB0A 2Q9JA 2LT2A 4K7XA 1XUAA 2QB7A 4J9WA 1W61A 2PW0A 1WPMA 4Q60A 2KPTA 1U1WA 4K7GB 4J9XA 4JUUA 1U1VA 2MPBA 2QB6A 1SDJA 3FVEA 3DEVA 2ZXPA 3PTJA 4PY9A 1K23A 5M47A 2HAWA 5H2YA 3ICJA 2ZXRA 4JCIA 2EB0A 4GL6A 4LS9A 1I74A 1IR6A
chains in the Genus database with same CATH topology
2Q9HA 1GQZA 1U1XA 4LG3A 5ANPA 3WQZA 3EJXA 1U0KA 2IW4A 1S7JA 4DUNA 2ENXA 4OA3A 3IGHX 2QB8A 3EKMA 5IWEA 2GKEA 2AZPA 3W5WA 2PVZA 3G98A 2YMAA 2H9FA 1K20A 1WPPA 1T6KA 2GKJA 1XUBA 2OTNA 4IJZA 4IK0A 3EDNA 1QYAA 1TM0A 3PW9A 2ZVFA 5H2GA 4JD7A 5HA4A 3G7KA 1QY9A 3PVHA 4Q2HA 1YM5A 2ZXOA 4RPAA 4JBDA 2KW7A 1W62A 1BWZA 4K8LA 4LB0A 2Q9JA 2LT2A 4K7XA 1XUAA 2QB7A 4J9WA 1W61A 2PW0A 1WPMA 4Q60A 2KPTA 1U1WA 4K7GB 4J9XA 4JUUA 1U1VA 2MPBA 2QB6A 1SDJA 3FVEA 3DEVA 2ZXPA 3PTJA 4PY9A 1K23A 5M47A 2HAWA 5H2YA 3ICJA 2ZXRA 4JCIA 2EB0A 4GL6A 4LS9A 1I74A 1IR6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JBD A;  2Q9H A;  1GQZ A;  2GKJ A;  1XUB A;  1U1X A;  2OTN A;  1W62 A;  1BWZ A;  4IJZ A;  1SDJ A;  3EJX A;  3FVE A;  1U0K A;  4K8L A;  4LB0 A;  2Q9J A;  4IK0 A;  4K7X A;  3EDN A;  1XUA A;  1QYA A;  1TM0 A;  1S7J A;  4DUN A;  5H2G A;  4JD7 A;  5M47 A;  5HA4 A;  5H2Y A;  3EKM A;  5IWE A;  4J9W A;  3G7K A;  2GKE A;  1W61 A;  2AZP A;  2PW0 A;  2PVZ A;  4Q60 A;  1QY9 A;  1U1W A;  4K7G B;  4Q2H A;  2H9F A;  4JCI A;  1YM5 A;  4J9X A;  4JUU A;  1T6K A;  1U1V A; 
#chains in the Genus database with same CATH topology
 2Q9H A;  1GQZ A;  1U1X A;  4LG3 A;  5ANP A;  3WQZ A;  3EJX A;  1U0K A;  2IW4 A;  1S7J A;  4DUN A;  2ENX A;  4OA3 A;  3IGH X;  2QB8 A;  3EKM A;  5IWE A;  2GKE A;  2AZP A;  3W5W A;  2PVZ A;  3G98 A;  2YMA A;  2H9F A;  1K20 A;  1WPP A;  1T6K A;  2GKJ A;  1XUB A;  2OTN A;  4IJZ A;  4IK0 A;  3EDN A;  1QYA A;  1TM0 A;  3PW9 A;  2ZVF A;  5H2G A;  4JD7 A;  5HA4 A;  3G7K A;  1QY9 A;  3PVH A;  4Q2H A;  1YM5 A;  2ZXO A;  4RPA A;  4JBD A;  2KW7 A;  1W62 A;  1BWZ A;  4K8L A;  4LB0 A;  2Q9J A;  2LT2 A;  4K7X A;  1XUA A;  2QB7 A;  4J9W A;  1W61 A;  2PW0 A;  1WPM A;  4Q60 A;  2KPT A;  1U1W A;  4K7G B;  4J9X A;  4JUU A;  1U1V A;  2MPB A;  2QB6 A;  1SDJ A;  3FVE A;  3DEV A;  2ZXP A;  3PTJ A;  4PY9 A;  1K23 A;  5M47 A;  2HAW A;  5H2Y A;  3ICJ A;  2ZXR A;  4JCI A;  2EB0 A;  4GL6 A;  4LS9 A;  1I74 A;  1IR6 A; 
#chains in the Genus database with same CATH homology
 2Q9H A;  1GQZ A;  1U1X A;  4LG3 A;  5ANP A;  3WQZ A;  3EJX A;  1U0K A;  2IW4 A;  1S7J A;  4DUN A;  2ENX A;  4OA3 A;  3IGH X;  2QB8 A;  3EKM A;  5IWE A;  2GKE A;  2AZP A;  3W5W A;  2PVZ A;  3G98 A;  2YMA A;  2H9F A;  1K20 A;  1WPP A;  1T6K A;  2GKJ A;  1XUB A;  2OTN A;  4IJZ A;  4IK0 A;  3EDN A;  1QYA A;  1TM0 A;  3PW9 A;  2ZVF A;  5H2G A;  4JD7 A;  5HA4 A;  3G7K A;  1QY9 A;  3PVH A;  4Q2H A;  1YM5 A;  2ZXO A;  4RPA A;  4JBD A;  2KW7 A;  1W62 A;  1BWZ A;  4K8L A;  4LB0 A;  2Q9J A;  2LT2 A;  4K7X A;  1XUA A;  2QB7 A;  4J9W A;  1W61 A;  2PW0 A;  1WPM A;  4Q60 A;  2KPT A;  1U1W A;  4K7G B;  4J9X A;  4JUU A;  1U1V A;  2MPB A;  2QB6 A;  1SDJ A;  3FVE A;  3DEV A;  2ZXP A;  3PTJ A;  4PY9 A;  1K23 A;  5M47 A;  2HAW A;  5H2Y A;  3ICJ A;  2ZXR A;  4JCI A;  2EB0 A;  4GL6 A;  4LS9 A;  1I74 A;  1IR6 A; 
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