4J9XA

Crystal structure of the complex of a hydroxyproline epimerase (target efi-506499, pseudomonas fluorescens pf-5) with trans-4-hydroxy-l-proline
Total Genus 84
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
84
sequence length
310
structure length
310
Chain Sequence
MKKITVIDSHTGGEPTRLVIDGFPDLGRGSMAERLQILEREHDQWRRACVLEPRGSDVLVGALLCQPQAGDACAGVIFFNNSGYLGMCGHGTIGLVRSLYHLGRIDQGVHRIETPVGTVEATLHEDLSVSVRNVPAYRYRTQVMLQLPGHGKVHGDIAWGGNWFFLISDHGQRIALDNVEALTHYTRDVRQALEAAGITGAEGGVIDHIELFADDPQADSRNFVLCPGKAYDRSPCGTGTSAKLACLAADGKLAPGQAWRQASVIGSQFSAHYEKVGEQLIPILRGSAHISAEATLLLDDSDPFVWGIGS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Proline racemase family protein
publication title Crystal structure of the complex of a hydroxyproline epimerase (TARGET EFI-506499, PSEUDOMONAS FLUORESCENS PF-5) with trans-4-hydroxy-l-proline
rcsb
source organism Pseudomonas protegens
molecule tags Isomerase
total genus 84
structure length 310
sequence length 310
chains with identical sequence B
ec nomenclature ec 5.1.1.8: 4-hydroxyproline epimerase.
pdb deposition date 2013-02-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05544 Pro_racemase Proline racemase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 4j9xA02
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 4j9xA01
4J9XA 5H2GA 2GKJA 5M47A 1W61A 4K7GB 2H9FA 3EKMA 4IK0A 4J9WA 2GKEA 1S7JA 4K7XA 4LB0A 5IWEA 5HA4A 1U1WA 1W62A 2PW0A 1T6KA 1U1XA 4JD7A 4Q60A 3EJXA 4IJZA 3G7KA 4JUUA 4DUNA 1XUBA 2AZPA 1GQZA 1U1VA 1QY9A 3FVEA 2Q9HA 2OTNA 2Q9JA 1XUAA 1U0KA 5H2YA 1SDJA 4Q2HA 1TM0A 1YM5A 1QYAA 3EDNA 4K8LA 1BWZA 4JBDA 4JCIA 2PVZA
chains in the Genus database with same CATH superfamily
2ZXOA 2H9FA 4K7XA 4J9WA 4LB0A 3G98A 1U1WA 1W62A 1T6KA 4JD7A 3DEVA 4IJZA 3G7KA 4DUNA 1XUBA 1WPPA 1U1VA 3FVEA 2ENXA 2LT2A 2KPTA 3ICJA 2MPBA 1K20A 1BWZA 1K23A 4J9XA 4LG3A 2ZXRA 4K7GB 3EKMA 5IWEA 2GKEA 1I74A 1GQZA 5ANPA 2HAWA 2Q9JA 1XUAA 3WQZA 3IGHX 4PY9A 1TM0A 1QYAA 4JCIA 2EB0A 2PVZA 5H2GA 2ZVFA 4OA3A 5M47A 3W5WA 2PW0A 1U1XA 3EJXA 4JUUA 2AZPA 1QY9A 2Q9HA 2OTNA 2KW7A 5H2YA 2QB8A 3PW9A 4Q2HA 1IR6A 4K8LA 1WPMA 2GKJA 2QB6A 4RPAA 4GL6A 1W61A 2YMAA 4IK0A 1S7JA 5HA4A 4Q60A 2QB7A 2IW4A 3PTJA 1U0KA 1SDJA 2ZXPA 4LS9A 1YM5A 3EDNA 3PVHA 4JBDA
chains in the Genus database with same CATH topology
2ZXOA 2H9FA 4K7XA 4J9WA 4LB0A 3G98A 1U1WA 1W62A 1T6KA 4JD7A 3DEVA 4IJZA 3G7KA 4DUNA 1XUBA 1WPPA 1U1VA 3FVEA 2ENXA 2LT2A 2KPTA 3ICJA 2MPBA 1K20A 1BWZA 1K23A 4J9XA 4LG3A 2ZXRA 4K7GB 3EKMA 5IWEA 2GKEA 1I74A 1GQZA 5ANPA 2HAWA 2Q9JA 1XUAA 3WQZA 3IGHX 4PY9A 1TM0A 1QYAA 4JCIA 2EB0A 2PVZA 5H2GA 2ZVFA 4OA3A 5M47A 3W5WA 2PW0A 1U1XA 3EJXA 4JUUA 2AZPA 1QY9A 2Q9HA 2OTNA 2KW7A 5H2YA 2QB8A 3PW9A 4Q2HA 1IR6A 4K8LA 1WPMA 2GKJA 2QB6A 4RPAA 4GL6A 1W61A 2YMAA 4IK0A 1S7JA 5HA4A 4Q60A 2QB7A 2IW4A 3PTJA 1U0KA 1SDJA 2ZXPA 4LS9A 1YM5A 3EDNA 3PVHA 4JBDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4J9X A;  5H2G A;  2GKJ A;  5M47 A;  1W61 A;  4K7G B;  2H9F A;  3EKM A;  4IK0 A;  4J9W A;  2GKE A;  1S7J A;  4K7X A;  4LB0 A;  5IWE A;  5HA4 A;  1U1W A;  1W62 A;  2PW0 A;  1T6K A;  1U1X A;  4JD7 A;  4Q60 A;  3EJX A;  4IJZ A;  3G7K A;  4JUU A;  4DUN A;  1XUB A;  2AZP A;  1GQZ A;  1U1V A;  1QY9 A;  3FVE A;  2Q9H A;  2OTN A;  2Q9J A;  1XUA A;  1U0K A;  5H2Y A;  1SDJ A;  4Q2H A;  1TM0 A;  1YM5 A;  1QYA A;  3EDN A;  4K8L A;  1BWZ A;  4JBD A;  4JCI A;  2PVZ A; 
#chains in the Genus database with same CATH topology
 2ZXO A;  2H9F A;  4K7X A;  4J9W A;  4LB0 A;  3G98 A;  1U1W A;  1W62 A;  1T6K A;  4JD7 A;  3DEV A;  4IJZ A;  3G7K A;  4DUN A;  1XUB A;  1WPP A;  1U1V A;  3FVE A;  2ENX A;  2LT2 A;  2KPT A;  3ICJ A;  2MPB A;  1K20 A;  1BWZ A;  1K23 A;  4J9X A;  4LG3 A;  2ZXR A;  4K7G B;  3EKM A;  5IWE A;  2GKE A;  1I74 A;  1GQZ A;  5ANP A;  2HAW A;  2Q9J A;  1XUA A;  3WQZ A;  3IGH X;  4PY9 A;  1TM0 A;  1QYA A;  4JCI A;  2EB0 A;  2PVZ A;  5H2G A;  2ZVF A;  4OA3 A;  5M47 A;  3W5W A;  2PW0 A;  1U1X A;  3EJX A;  4JUU A;  2AZP A;  1QY9 A;  2Q9H A;  2OTN A;  2KW7 A;  5H2Y A;  2QB8 A;  3PW9 A;  4Q2H A;  1IR6 A;  4K8L A;  1WPM A;  2GKJ A;  2QB6 A;  4RPA A;  4GL6 A;  1W61 A;  2YMA A;  4IK0 A;  1S7J A;  5HA4 A;  4Q60 A;  2QB7 A;  2IW4 A;  3PTJ A;  1U0K A;  1SDJ A;  2ZXP A;  4LS9 A;  1YM5 A;  3EDN A;  3PVH A;  4JBD A; 
#chains in the Genus database with same CATH homology
 2ZXO A;  2H9F A;  4K7X A;  4J9W A;  4LB0 A;  3G98 A;  1U1W A;  1W62 A;  1T6K A;  4JD7 A;  3DEV A;  4IJZ A;  3G7K A;  4DUN A;  1XUB A;  1WPP A;  1U1V A;  3FVE A;  2ENX A;  2LT2 A;  2KPT A;  3ICJ A;  2MPB A;  1K20 A;  1BWZ A;  1K23 A;  4J9X A;  4LG3 A;  2ZXR A;  4K7G B;  3EKM A;  5IWE A;  2GKE A;  1I74 A;  1GQZ A;  5ANP A;  2HAW A;  2Q9J A;  1XUA A;  3WQZ A;  3IGH X;  4PY9 A;  1TM0 A;  1QYA A;  4JCI A;  2EB0 A;  2PVZ A;  5H2G A;  2ZVF A;  4OA3 A;  5M47 A;  3W5W A;  2PW0 A;  1U1X A;  3EJX A;  4JUU A;  2AZP A;  1QY9 A;  2Q9H A;  2OTN A;  2KW7 A;  5H2Y A;  2QB8 A;  3PW9 A;  4Q2H A;  1IR6 A;  4K8L A;  1WPM A;  2GKJ A;  2QB6 A;  4RPA A;  4GL6 A;  1W61 A;  2YMA A;  4IK0 A;  1S7J A;  5HA4 A;  4Q60 A;  2QB7 A;  2IW4 A;  3PTJ A;  1U0K A;  1SDJ A;  2ZXP A;  4LS9 A;  1YM5 A;  3EDN A;  3PVH A;  4JBD A; 
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similar chains in the Genus database (?% sequence similarity)
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