4JA3A

Partially occluded inward open conformation of the xylose transporter xyle from e. coli
Total Genus 174
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
174
sequence length
458
structure length
426
Chain Sequence
SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRGVIVIGVMLSIFQQFVGINVVLYYAPEVSTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEALAIAVAAQWLANYFVSWTFPMMDKNSHNGFSYWIYGCMGVLAALFMWKFVPE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords D-xylose-proton symporter
publication title Structural basis for substrate transport in the GLUT-homology family of monosaccharide transporters.
pubmed doi rcsb
source organism Escherichia coli
total genus 174
structure length 426
sequence length 458
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-02-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00083 Sugar_tr Sugar (and other) transporter
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.286.90 Mainly Alpha Orthogonal Bundle GTP Cyclohydrolase I; Chain A, domain 1 GTP Cyclohydrolase I; Chain A, domain 1 4ja3A02
1.20.1250.20 Mainly Alpha Up-down Bundle Growth Hormone; Chain: A; MFS general substrate transporter like domains 4ja3A01
1.20.1250.20 Mainly Alpha Up-down Bundle Growth Hormone; Chain: A; MFS general substrate transporter like domains 4ja3A03
4IKZA 4TPGA 1PV7A 5A2NA 3O7QA 3O7PA 4IKWA 4LDSA 4JA3A 4D2BA 5GXBA 4GC0A 5EQHA 4IKXA 5A2OA 4W6VA 1PW4A 4OAAA 4U4WA 4APSA 4XNIA 3WDOA 4ZW9A 2CFPA 4QIQA 5C65A 4GBZA 4D2DA 4TPHA 4ZYRA 4ZWCA 4ZWBA 2CFQA 5EQIA 2Y5YA 5EQGA 4TPJA 4YBQA 4U4VA 4PYPA 4IKVA 4U4TA 4IU9A 5D6KA 2V8NA 1PV6A 4JREA 4GBYA 4LEPA 4UVMA 5D58A 4JR9A 4YB9D 4D2CA 4Q65A 4IKYA 2XUTA 4OH3A 4IU8A 4XNJA 5D59A 4J05A
chains in the Genus database with same CATH superfamily
2KR1A 2WSCK 3LB6A 1BGEA 2CFPA 1V7NV 5C3ED 3BESL 5D28B 3HHRA 3PO3D 1PVHB 4GBYA 3HOYD 2B5IA 1HZIA 4CNIC 1PV7A 1ITMA 2LNZA 1HULA 4DOHA 2IL6A 2Q98A 4A3KD 3QT2C 5C4XD 1ALUA 1VLKA 3L5WI 1Y14A 4JREA 4PS4A 2O6IA 3H0GD 4UVMA 1AXIA 5C7XA 1A7MA 3D48P 1ETEA 5FHXA 5GXBA 3HOXD 1GNCA 3NPZA 1LK3A 1Y6NL 3BPOA 4WRLB 4U4TA 3H3VE 3I4ND 3OG6A 4JR9A 5KNHI 4BBRD 4A3FD 3S9DA 1FB1A 3PIVA 4NEJA 1ITFA 2VUMD 1IS8A 1Z7CA 4IKWA 4NI9A 4O6KA 4GC0A 5A2OA 5D71A 3G9VB 2WSCG 3G6DA 2LMSA 4DKEA 4MHLA 4GS7A 3L5XA 3TGXB 1CD9A 2R7ZD 4NN6A 1A9CA 4A3GD 3FKID 5D59A 4EXNA 3PIWA 4A3JD 3Q1SI 4JA3A 3QB1A 1PW4A 2B8ZA 1P9MB 1FG9A 4GBZA 4Q7JA 4YDYI 2Y5YA 1D9CA 1HIJA 3DGCL 1WU3I 4ZF7A 1D9GA 5D22A 4A3LD 4O9HA 1HWGA 1Y1WD 5C44D 2ILKA 3OG4A 4E44B 2B8YA 4I77Z 3QB7A 5E4EA 1HGUA 2C35A 4IKVA 3B0BC 1ITLA 3UX9A 3NCBA 4ZS7A 2Z3QA 3HMXB 1PGRA 1M4RA 1BUYA 1M4CA 4EXPA 5LQBA 2LAGA 3N06A 4A3CD 1SCFA 4ZYRA 4TPHA 4BXXD 3LB6B 3INKC 1M4BA 5D70A 1IJZA 1AX8A 1WCMD 2B90A 1N3TA 1FBXA 1N3RA 2O26A 4BY1D 3DUHC 3LW5K 1A8RA 4DRBJ 4IKXA 4DKFA 5IYCD 4XNIA 5TS9A 3NCEA 4DU6A 5C65A 3UEZE 1F6FA 1QVNA 2B91A 2OQPA 1ILKA 1Y6ML 2D9QA 2JA7D 4R8QA 3I4MD 3HOZD 2HYMB 3VEJA 4J05A 2P11A 3BMBA 4A3MD 4TPGA 1EMRA 1HIKA 1HUWA 1HWHA 3O7QA 2ERJD 4LDSA 4X51A 5A2NA 2L3YA 1JLIA 4J4LC 2PN0A 3NCFA 2GMFA 4NI7A 1BGDA 4DKCA 2Z3RA 1EERA 4QIQA 3UF2A 4PYPA 3BPLA 1ITIA 5DMZA 4QPMA 5L6YC 5FLMD 4YQXA 2WSEK 2Q7NB 2CYKA 4NE6B 4DKDA 1AIPC 1A22A 5FUCA 1EL6A 2XQBA 2R93D 1M47A 1YKBA 4NN5A 4D2DA 4ZWBA 5EQIA 1PW6A 1N1FA 1IS7A 5D72A 3SE4B 4D2CA 4IKZA 2JA6D 5IP7D 4NN7A 2WSFK 4W6VA 1WUQA 4APSA 4FA8E 4DRAE 1GTPA 3D85C 1CN4C 4NE5B 3OQ3A 3QWRB 4U4VA 4A3ID 1F45B 2V8NA 1WM9A 1J7VL 4YUEC 1M4AA 2E9WC 2Q14A 4XNJA 1BGCA 1V7MV 1WPLA 1INRA 4ZW9A 1Y6KL 2O27A 3SE3B 3EW3A 1LQSL 4GRWA 1RFBA 2PSMA 5EQHA 2WSEG 2JA5D 4NE3B 2D48A 2B8UA 3EJJA 1I1RB 1BP3A 3VA2A 2JA8D 1LKIA 1CSGA 2KZ1A 5EQGA 1BBNA 4TPJA 2B63D 4NEMA 1WURA 3DLQI 1IK0A 4YPGC 4IU8A 4LRLA 3IRHA 2LO0A 1NBPA 5IYBD 1KF9A 2WSFG 4OAAA 1BCNA 4A3BD 1EFUB 2H24A 3QAZA 3NCCA 2CFQA 4YBQA 3BPNA 1AU1A 4Q65A 4IKYA 2XUTA 1IL6A 4E45B 3O7PA 3HOWD 4D2BA 1EXZA 3HHCA 4Z5RD 1B5LA 1RCBA 3HOVD 4A3ED 3PO2D 3N0PA 4ZWCA 1FYHA 3HOUD 1M49A 1PY2A 4BBSD 4IU9A 3D87A 1N3SA 1RHGA 1Y1VD 1IRLA 3UF5A 1IARA 3DI2A 3B5KA 2O01G 5IYDD 4A93D 3LW5G 1M48A 4NKQC 4U4WA 3WDOA 3DI3A 2B8XA 3MZGA 3AYHA 3WCYI 1CYLA 4A3DD 1EVSA 1RW5A 1GA3A 1EKUA 2INTA 5IP9D 2R92D 5D6KA 1PV6A 4RS1A 1CNT1 1TFEA 4LEPA 5D58A 4YB9D 2L3OA 4OH3A 4BY7D 1Z92A
chains in the Genus database with same CATH topology
4TPGA 4NE3B 5A2NA 3O7QA 4LDSA 2KR1A 4JA3A 1PW4A 2PN0A 2CFPA 4QIQA 4GBZA 4Q7JA 5EQGA 2Y5YA 4TPJA 4PYPA 1WURA 4GBYA 5DMZA 4QPMA 4IU8A 2LO0A 1PV7A 4NE6B 2LNZA 1AIPC 1EL6A 4OAAA 4E44B 1EFUB 4D2DA 4ZWBA 2CFQA 5EQIA 4YBQA 4IKVA 3B0BC 4JREA 1IS7A 4UVMA 4D2CA 4Q65A 4IKYA 2XUTA 4E45B 4IKZA 3O7PA 4D2BA 5GXBA 4W6VA 1WUQA 4APSA 4DRAE 1GTPA 4ZYRA 4TPHA 4ZWCA 4NE5B 4U4VA 2P11A 4U4TA 4IU9A 2V8NA 1N3SA 1WM9A 4JR9A 1N3TA 4XNJA 1FBXA 1N3RA 1FB1A 1IS8A 4IKWA 4GC0A 1A8RA 4DRBJ 4IKXA 5EQHA 1WPLA 5A2OA 4U4WA 4XNIA 3WDOA 4ZW9A 4DU6A 5C65A 5D6KA 1PV6A 4R8QA 1TFEA 4LEPA 5D58A 4YB9D 1A9CA 4OH3A 3VEJA 5D59A 4J05A 3BMBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4IKZ A;  4TPG A;  1PV7 A;  5A2N A;  3O7Q A;  3O7P A;  4IKW A;  4LDS A;  4JA3 A;  4D2B A;  5GXB A;  4GC0 A;  5EQH A;  4IKX A;  5A2O A;  4W6V A;  1PW4 A;  4OAA A;  4U4W A;  4APS A;  4XNI A;  3WDO A;  4ZW9 A;  2CFP A;  4QIQ A;  5C65 A;  4GBZ A;  4D2D A;  4TPH A;  4ZYR A;  4ZWC A;  4ZWB A;  2CFQ A;  5EQI A;  2Y5Y A;  5EQG A;  4TPJ A;  4YBQ A;  4U4V A;  4PYP A;  4IKV A;  4U4T A;  4IU9 A;  5D6K A;  2V8N A;  1PV6 A;  4JRE A;  4GBY A;  4LEP A;  4UVM A;  5D58 A;  4JR9 A;  4YB9 D;  4D2C A;  4Q65 A;  4IKY A;  2XUT A;  4OH3 A;  4IU8 A;  4XNJ A;  5D59 A;  4J05 A; 
#chains in the Genus database with same CATH topology
 2KR1 A;  2WSC K;  3LB6 A;  1BGE A;  2CFP A;  1V7N V;  5C3E D;  3BES L;  5D28 B;  3HHR A;  3PO3 D;  1PVH B;  4GBY A;  3HOY D;  2B5I A;  1HZI A;  4CNI C;  1PV7 A;  1ITM A;  2LNZ A;  1HUL A;  4DOH A;  2IL6 A;  2Q98 A;  4A3K D;  3QT2 C;  5C4X D;  1ALU A;  1VLK A;  3L5W I;  1Y14 A;  4JRE A;  4PS4 A;  2O6I A;  3H0G D;  4UVM A;  1AXI A;  5C7X A;  1A7M A;  3D48 P;  1ETE A;  5FHX A;  5GXB A;  3HOX D;  1GNC A;  3NPZ A;  1LK3 A;  1Y6N L;  3BPO A;  4WRL B;  4U4T A;  3H3V E;  3I4N D;  3OG6 A;  4JR9 A;  5KNH I;  4BBR D;  4A3F D;  3S9D A;  1FB1 A;  3PIV A;  4NEJ A;  1ITF A;  2VUM D;  1IS8 A;  1Z7C A;  4IKW A;  4NI9 A;  4O6K A;  4GC0 A;  5A2O A;  5D71 A;  3G9V B;  2WSC G;  3G6D A;  2LMS A;  4DKE A;  4MHL A;  4GS7 A;  3L5X A;  3TGX B;  1CD9 A;  2R7Z D;  4NN6 A;  1A9C A;  4A3G D;  3FKI D;  5D59 A;  4EXN A;  3PIW A;  4A3J D;  3Q1S I;  4JA3 A;  3QB1 A;  1PW4 A;  2B8Z A;  1P9M B;  1FG9 A;  4GBZ A;  4Q7J A;  4YDY I;  2Y5Y A;  1D9C A;  1HIJ A;  3DGC L;  1WU3 I;  4ZF7 A;  1D9G A;  5D22 A;  4A3L D;  4O9H A;  1HWG A;  1Y1W D;  5C44 D;  2ILK A;  3OG4 A;  4E44 B;  2B8Y A;  4I77 Z;  3QB7 A;  5E4E A;  1HGU A;  2C35 A;  4IKV A;  3B0B C;  1ITL A;  3UX9 A;  3NCB A;  4ZS7 A;  2Z3Q A;  3HMX B;  1PGR A;  1M4R A;  1BUY A;  1M4C A;  4EXP A;  5LQB A;  2LAG A;  3N06 A;  4A3C D;  1SCF A;  4ZYR A;  4TPH A;  4BXX D;  3LB6 B;  3INK C;  1M4B A;  5D70 A;  1IJZ A;  1AX8 A;  1WCM D;  2B90 A;  1N3T A;  1FBX A;  1N3R A;  2O26 A;  4BY1 D;  3DUH C;  3LW5 K;  1A8R A;  4DRB J;  4IKX A;  4DKF A;  5IYC D;  4XNI A;  5TS9 A;  3NCE A;  4DU6 A;  5C65 A;  3UEZ E;  1F6F A;  1QVN A;  2B91 A;  2OQP A;  1ILK A;  1Y6M L;  2D9Q A;  2JA7 D;  4R8Q A;  3I4M D;  3HOZ D;  2HYM B;  3VEJ A;  4J05 A;  2P11 A;  3BMB A;  4A3M D;  4TPG A;  1EMR A;  1HIK A;  1HUW A;  1HWH A;  3O7Q A;  2ERJ D;  4LDS A;  4X51 A;  5A2N A;  2L3Y A;  1JLI A;  4J4L C;  2PN0 A;  3NCF A;  2GMF A;  4NI7 A;  1BGD A;  4DKC A;  2Z3R A;  1EER A;  4QIQ A;  3UF2 A;  4PYP A;  3BPL A;  1ITI A;  5DMZ A;  4QPM A;  5L6Y C;  5FLM D;  4YQX A;  2WSE K;  2Q7N B;  2CYK A;  4NE6 B;  4DKD A;  1AIP C;  1A22 A;  5FUC A;  1EL6 A;  2XQB A;  2R93 D;  1M47 A;  1YKB A;  4NN5 A;  4D2D A;  4ZWB A;  5EQI A;  1PW6 A;  1N1F A;  1IS7 A;  5D72 A;  3SE4 B;  4D2C A;  4IKZ A;  2JA6 D;  5IP7 D;  4NN7 A;  2WSF K;  4W6V A;  1WUQ A;  4APS A;  4FA8 E;  4DRA E;  1GTP A;  3D85 C;  1CN4 C;  4NE5 B;  3OQ3 A;  3QWR B;  4U4V A;  4A3I D;  1F45 B;  2V8N A;  1WM9 A;  1J7V L;  4YUE C;  1M4A A;  2E9W C;  2Q14 A;  4XNJ A;  1BGC A;  1V7M V;  1WPL A;  1INR A;  4ZW9 A;  1Y6K L;  2O27 A;  3SE3 B;  3EW3 A;  1LQS L;  4GRW A;  1RFB A;  2PSM A;  5EQH A;  2WSE G;  2JA5 D;  4NE3 B;  2D48 A;  2B8U A;  3EJJ A;  1I1R B;  1BP3 A;  3VA2 A;  2JA8 D;  1LKI A;  1CSG A;  2KZ1 A;  5EQG A;  1BBN A;  4TPJ A;  2B63 D;  4NEM A;  1WUR A;  3DLQ I;  1IK0 A;  4YPG C;  4IU8 A;  4LRL A;  3IRH A;  2LO0 A;  1NBP A;  5IYB D;  1KF9 A;  2WSF G;  4OAA A;  1BCN A;  4A3B D;  1EFU B;  2H24 A;  3QAZ A;  3NCC A;  2CFQ A;  4YBQ A;  3BPN A;  1AU1 A;  4Q65 A;  4IKY A;  2XUT A;  1IL6 A;  4E45 B;  3O7P A;  3HOW D;  4D2B A;  1EXZ A;  3HHC A;  4Z5R D;  1B5L A;  1RCB A;  3HOV D;  4A3E D;  3PO2 D;  3N0P A;  4ZWC A;  1FYH A;  3HOU D;  1M49 A;  1PY2 A;  4BBS D;  4IU9 A;  3D87 A;  1N3S A;  1RHG A;  1Y1V D;  1IRL A;  3UF5 A;  1IAR A;  3DI2 A;  3B5K A;  2O01 G;  5IYD D;  4A93 D;  3LW5 G;  1M48 A;  4NKQ C;  4U4W A;  3WDO A;  3DI3 A;  2B8X A;  3MZG A;  3AYH A;  3WCY I;  1CYL A;  4A3D D;  1EVS A;  1RW5 A;  1GA3 A;  1EKU A;  2INT A;  5IP9 D;  2R92 D;  5D6K A;  1PV6 A;  4RS1 A;  1CNT 1;  1TFE A;  4LEP A;  5D58 A;  4YB9 D;  2L3O A;  4OH3 A;  4BY7 D;  1Z92 A; 
#chains in the Genus database with same CATH homology
 4TPG A;  4NE3 B;  5A2N A;  3O7Q A;  4LDS A;  2KR1 A;  4JA3 A;  1PW4 A;  2PN0 A;  2CFP A;  4QIQ A;  4GBZ A;  4Q7J A;  5EQG A;  2Y5Y A;  4TPJ A;  4PYP A;  1WUR A;  4GBY A;  5DMZ A;  4QPM A;  4IU8 A;  2LO0 A;  1PV7 A;  4NE6 B;  2LNZ A;  1AIP C;  1EL6 A;  4OAA A;  4E44 B;  1EFU B;  4D2D A;  4ZWB A;  2CFQ A;  5EQI A;  4YBQ A;  4IKV A;  3B0B C;  4JRE A;  1IS7 A;  4UVM A;  4D2C A;  4Q65 A;  4IKY A;  2XUT A;  4E45 B;  4IKZ A;  3O7P A;  4D2B A;  5GXB A;  4W6V A;  1WUQ A;  4APS A;  4DRA E;  1GTP A;  4ZYR A;  4TPH A;  4ZWC A;  4NE5 B;  4U4V A;  2P11 A;  4U4T A;  4IU9 A;  2V8N A;  1N3S A;  1WM9 A;  4JR9 A;  1N3T A;  4XNJ A;  1FBX A;  1N3R A;  1FB1 A;  1IS8 A;  4IKW A;  4GC0 A;  1A8R A;  4DRB J;  4IKX A;  5EQH A;  1WPL A;  5A2O A;  4U4W A;  4XNI A;  3WDO A;  4ZW9 A;  4DU6 A;  5C65 A;  5D6K A;  1PV6 A;  4R8Q A;  1TFE A;  4LEP A;  5D58 A;  4YB9 D;  1A9C A;  4OH3 A;  3VEJ A;  5D59 A;  4J05 A;  3BMB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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