4JCIA

Crystal structure of csal_2705, a putative hydroxyproline epimerase from chromohalobacter salexigens (target efi-506486), space group p212121, unliganded
Total Genus 80
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
80
sequence length
313
structure length
312
Chain Sequence
b'YFQSMKRVHVIDSHTAGEPTRLVMEGMPALSGRTIAEKCDDFRDNHDAWRRAIMLEPRGHDVLVGALYCAPESSDASCGVIFFNNSGYLGMCGHGTIGLVASLHHLGQLTPGCHKIDTPAGPVSATLHDDGAVTVRNVLSYRHRRRVPVEVPGYGTVHGDIAWGGNWFFLVSDDMTLELDNVEALTDYTWAIRQALEAQSITGENGGVIDHIELFCDDREADSRNFVLCPGKAYDRSPCGTGTSAKLACLAADGKLAPGQVWTQASICGSRFEAFYEREGDGIRPSIKGRAYLSADATLLIDERDPFAWGIA'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Proline racemase
publication title Crystal structure of csal_2705, a putative hydroxyproline epimerase from CHROMOHALOBACTER SALEXIGENS (TARGET EFI-506486), space group P212121, unliganded
rcsb
source organism Chromohalobacter salexigens
molecule tags Isomerase
total genus 80
structure length 312
sequence length 313
chains with identical sequence B
ec nomenclature ec 5.1.1.8: 4-hydroxyproline epimerase.
pdb deposition date 2013-02-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05544 Pro_racemase Proline racemase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 4jciA02
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 4jciA01
4JCIA 1GQZA 1W62A 4JBDA 1S7JA 1BWZA 1U1VA 1YM5A 3G7KA 1U1WA 4IK0A 2H9FA 3EKMA 1QY9A 4IJZA 2Q9HA 3FVEA 1U0KA 2GKJA 5IWEA 4K7GB 1U1XA 2PW0A 4K8LA 4Q60A 5H2GA 2GKEA 2OTNA 2PVZA 2Q9JA 4LB0A 4JUUA 1XUBA 4JD7A 5M47A 1SDJA 5HA4A 1QYAA 2AZPA 1TM0A 4K7XA 5H2YA 1T6KA 3EDNA 3EJXA 1XUAA 4DUNA 4J9WA 4Q2HA 4J9XA 1W61A
chains in the Genus database with same CATH superfamily
1GQZA 1W62A 4OA3A 2EB0A 1U1WA 4IK0A 3EKMA 5ANPA 3FVEA 2GKJA 4K7GB 3PTJA 3PW9A 1WPMA 4LB0A 4LS9A 1QYAA 4K7XA 3W5WA 3EDNA 4J9XA 1W61A 5H2GA 4JCIA 2LT2A 1U1VA 3G7KA 2H9FA 1WPPA 1QY9A 4IJZA 2Q9HA 1U1XA 2HAWA 2PW0A 2ZXRA 2Q9JA 2QB7A 2IW4A 2KW7A 4JD7A 5M47A 4RPAA 2AZPA 1K20A 1T6KA 4J9WA 3WQZA 3DEVA 2ZXPA 4JBDA 1S7JA 4LG3A 1I74A 1YM5A 1K23A 1U0KA 2QB8A 5IWEA 4K8LA 2PVZA 1XUBA 3G98A 1IR6A 3EJXA 4DUNA 3ICJA 1BWZA 3IGHX 2KPTA 2QB6A 2YMAA 2ZVFA 2MPBA 4PY9A 4GL6A 4Q60A 2GKEA 2OTNA 4JUUA 3PVHA 2ZXOA 1SDJA 5HA4A 1TM0A 5H2YA 1XUAA 4Q2HA 2ENXA
chains in the Genus database with same CATH topology
1GQZA 1W62A 4OA3A 2EB0A 1U1WA 4IK0A 3EKMA 5ANPA 3FVEA 2GKJA 4K7GB 3PTJA 3PW9A 1WPMA 4LB0A 4LS9A 1QYAA 4K7XA 3W5WA 3EDNA 4J9XA 1W61A 5H2GA 4JCIA 2LT2A 1U1VA 3G7KA 2H9FA 1WPPA 1QY9A 4IJZA 2Q9HA 1U1XA 2HAWA 2PW0A 2ZXRA 2Q9JA 2QB7A 2IW4A 2KW7A 4JD7A 5M47A 4RPAA 2AZPA 1K20A 1T6KA 4J9WA 3WQZA 3DEVA 2ZXPA 4JBDA 1S7JA 4LG3A 1I74A 1YM5A 1K23A 1U0KA 2QB8A 5IWEA 4K8LA 2PVZA 1XUBA 3G98A 1IR6A 3EJXA 4DUNA 3ICJA 1BWZA 3IGHX 2KPTA 2QB6A 2YMAA 2ZVFA 2MPBA 4PY9A 4GL6A 4Q60A 2GKEA 2OTNA 4JUUA 3PVHA 2ZXOA 1SDJA 5HA4A 1TM0A 5H2YA 1XUAA 4Q2HA 2ENXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JCI A;  1GQZ A;  1W62 A;  4JBD A;  1S7J A;  1BWZ A;  1U1V A;  1YM5 A;  3G7K A;  1U1W A;  4IK0 A;  2H9F A;  3EKM A;  1QY9 A;  4IJZ A;  2Q9H A;  3FVE A;  1U0K A;  2GKJ A;  5IWE A;  4K7G B;  1U1X A;  2PW0 A;  4K8L A;  4Q60 A;  5H2G A;  2GKE A;  2OTN A;  2PVZ A;  2Q9J A;  4LB0 A;  4JUU A;  1XUB A;  4JD7 A;  5M47 A;  1SDJ A;  5HA4 A;  1QYA A;  2AZP A;  1TM0 A;  4K7X A;  5H2Y A;  1T6K A;  3EDN A;  3EJX A;  1XUA A;  4DUN A;  4J9W A;  4Q2H A;  4J9X A;  1W61 A; 
#chains in the Genus database with same CATH topology
 1GQZ A;  1W62 A;  4OA3 A;  2EB0 A;  1U1W A;  4IK0 A;  3EKM A;  5ANP A;  3FVE A;  2GKJ A;  4K7G B;  3PTJ A;  3PW9 A;  1WPM A;  4LB0 A;  4LS9 A;  1QYA A;  4K7X A;  3W5W A;  3EDN A;  4J9X A;  1W61 A;  5H2G A;  4JCI A;  2LT2 A;  1U1V A;  3G7K A;  2H9F A;  1WPP A;  1QY9 A;  4IJZ A;  2Q9H A;  1U1X A;  2HAW A;  2PW0 A;  2ZXR A;  2Q9J A;  2QB7 A;  2IW4 A;  2KW7 A;  4JD7 A;  5M47 A;  4RPA A;  2AZP A;  1K20 A;  1T6K A;  4J9W A;  3WQZ A;  3DEV A;  2ZXP A;  4JBD A;  1S7J A;  4LG3 A;  1I74 A;  1YM5 A;  1K23 A;  1U0K A;  2QB8 A;  5IWE A;  4K8L A;  2PVZ A;  1XUB A;  3G98 A;  1IR6 A;  3EJX A;  4DUN A;  3ICJ A;  1BWZ A;  3IGH X;  2KPT A;  2QB6 A;  2YMA A;  2ZVF A;  2MPB A;  4PY9 A;  4GL6 A;  4Q60 A;  2GKE A;  2OTN A;  4JUU A;  3PVH A;  2ZXO A;  1SDJ A;  5HA4 A;  1TM0 A;  5H2Y A;  1XUA A;  4Q2H A;  2ENX A; 
#chains in the Genus database with same CATH homology
 1GQZ A;  1W62 A;  4OA3 A;  2EB0 A;  1U1W A;  4IK0 A;  3EKM A;  5ANP A;  3FVE A;  2GKJ A;  4K7G B;  3PTJ A;  3PW9 A;  1WPM A;  4LB0 A;  4LS9 A;  1QYA A;  4K7X A;  3W5W A;  3EDN A;  4J9X A;  1W61 A;  5H2G A;  4JCI A;  2LT2 A;  1U1V A;  3G7K A;  2H9F A;  1WPP A;  1QY9 A;  4IJZ A;  2Q9H A;  1U1X A;  2HAW A;  2PW0 A;  2ZXR A;  2Q9J A;  2QB7 A;  2IW4 A;  2KW7 A;  4JD7 A;  5M47 A;  4RPA A;  2AZP A;  1K20 A;  1T6K A;  4J9W A;  3WQZ A;  3DEV A;  2ZXP A;  4JBD A;  1S7J A;  4LG3 A;  1I74 A;  1YM5 A;  1K23 A;  1U0K A;  2QB8 A;  5IWE A;  4K8L A;  2PVZ A;  1XUB A;  3G98 A;  1IR6 A;  3EJX A;  4DUN A;  3ICJ A;  1BWZ A;  3IGH X;  2KPT A;  2QB6 A;  2YMA A;  2ZVF A;  2MPB A;  4PY9 A;  4GL6 A;  4Q60 A;  2GKE A;  2OTN A;  4JUU A;  3PVH A;  2ZXO A;  1SDJ A;  5HA4 A;  1TM0 A;  5H2Y A;  1XUA A;  4Q2H A;  2ENX A; 
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similar chains in the Genus database (?% sequence similarity)
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