4JCIA

Crystal structure of csal_2705, a putative hydroxyproline epimerase from chromohalobacter salexigens (target efi-506486), space group p212121, unliganded
Total Genus 80
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
80
sequence length
313
structure length
312
Chain Sequence
YFQSMKRVHVIDSHTAGEPTRLVMEGMPALSGRTIAEKCDDFRDNHDAWRRAIMLEPRGHDVLVGALYCAPESSDASCGVIFFNNSGYLGMCGHGTIGLVASLHHLGQLTPGCHKIDTPAGPVSATLHDDGAVTVRNVLSYRHRRRVPVEVPGYGTVHGDIAWGGNWFFLVSDDMTLELDNVEALTDYTWAIRQALEAQSITGENGGVIDHIELFCDDREADSRNFVLCPGKAYDRSPCGTGTSAKLACLAADGKLAPGQVWTQASICGSRFEAFYEREGDGIRPSIKGRAYLSADATLLIDERDPFAWGIA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of csal_2705, a putative hydroxyproline epimerase from CHROMOHALOBACTER SALEXIGENS (TARGET EFI-506486), space group P212121, unliganded
rcsb
source organism Chromohalobacter salexigens
molecule tags Isomerase
molecule keywords Proline racemase
total genus 80
structure length 312
sequence length 313
chains with identical sequence B
ec nomenclature ec 5.1.1.8: 4-hydroxyproline epimerase.
pdb deposition date 2013-02-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05544 Pro_racemase Proline racemase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 4jciA02
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 4jciA01
5M47A 1SDJA 5H2GA 4K8LA 4JUUA 2Q9HA 3EJXA 2H9FA 1XUAA 2GKEA 1U0KA 2PW0A 1T6KA 3FVEA 3G7KA 4Q2HA 2Q9JA 1XUBA 4DUNA 4IJZA 4J9XA 4LB0A 5H2YA 1BWZA 3EDNA 4IK0A 1GQZA 3EKMA 4JCIA 1YM5A 2OTNA 4Q60A 1QYAA 1W62A 1U1VA 5IWEA 1S7JA 1U1XA 2PVZA 5HA4A 2GKJA 1TM0A 1QY9A 1U1WA 4J9WA 4K7XA 2AZPA 1W61A 4K7GB 4JBDA 4JD7A
chains in the Genus database with same CATH superfamily
4OA3A 5ANPA 3PTJA 3W5WA 2Q9HA 3PW9A 2H9FA 1U0KA 2YMAA 1IR6A 1K20A 1XUBA 4IJZA 5IWEA 1BWZA 1YM5A 3ICJA 3DEVA 2GKJA 2QB6A 4JBDA 4RPAA 4JUUA 2PW0A 4LB0A 3EDNA 1GQZA 4JCIA 4Q60A 2IW4A 2MPBA 1I74A 4LS9A 2EB0A 2PVZA 2KPTA 1QY9A 1U1WA 4J9WA 2ZXOA 1W61A 5M47A 4JD7A 1SDJA 4K8LA 3EJXA 1XUAA 2GKEA 1T6KA 2ENXA 3G7KA 4Q2HA 2HAWA 4LG3A 4DUNA 3WQZA 5H2YA 1WPPA 4IK0A 2OTNA 1WPMA 1QYAA 1W62A 1U1VA 1S7JA 2QB8A 5HA4A 3IGHX 4K7XA 2AZPA 2ZVFA 4K7GB 4PY9A 5H2GA 4GL6A 2KW7A 3FVEA 2Q9JA 1K23A 3PVHA 4J9XA 3EKMA 2LT2A 1U1XA 2QB7A 3G98A 1TM0A 2ZXRA 2ZXPA
chains in the Genus database with same CATH topology
4OA3A 5ANPA 3PTJA 3W5WA 2Q9HA 3PW9A 2H9FA 1U0KA 2YMAA 1IR6A 1K20A 1XUBA 4IJZA 5IWEA 1BWZA 1YM5A 3ICJA 3DEVA 2GKJA 2QB6A 4JBDA 4RPAA 4JUUA 2PW0A 4LB0A 3EDNA 1GQZA 4JCIA 4Q60A 2IW4A 2MPBA 1I74A 4LS9A 2EB0A 2PVZA 2KPTA 1QY9A 1U1WA 4J9WA 2ZXOA 1W61A 5M47A 4JD7A 1SDJA 4K8LA 3EJXA 1XUAA 2GKEA 1T6KA 2ENXA 3G7KA 4Q2HA 2HAWA 4LG3A 4DUNA 3WQZA 5H2YA 1WPPA 4IK0A 2OTNA 1WPMA 1QYAA 1W62A 1U1VA 1S7JA 2QB8A 5HA4A 3IGHX 4K7XA 2AZPA 2ZVFA 4K7GB 4PY9A 5H2GA 4GL6A 2KW7A 3FVEA 2Q9JA 1K23A 3PVHA 4J9XA 3EKMA 2LT2A 1U1XA 2QB7A 3G98A 1TM0A 2ZXRA 2ZXPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5M47 A;  1SDJ A;  5H2G A;  4K8L A;  4JUU A;  2Q9H A;  3EJX A;  2H9F A;  1XUA A;  2GKE A;  1U0K A;  2PW0 A;  1T6K A;  3FVE A;  3G7K A;  4Q2H A;  2Q9J A;  1XUB A;  4DUN A;  4IJZ A;  4J9X A;  4LB0 A;  5H2Y A;  1BWZ A;  3EDN A;  4IK0 A;  1GQZ A;  3EKM A;  4JCI A;  1YM5 A;  2OTN A;  4Q60 A;  1QYA A;  1W62 A;  1U1V A;  5IWE A;  1S7J A;  1U1X A;  2PVZ A;  5HA4 A;  2GKJ A;  1TM0 A;  1QY9 A;  1U1W A;  4J9W A;  4K7X A;  2AZP A;  1W61 A;  4K7G B;  4JBD A;  4JD7 A; 
#chains in the Genus database with same CATH topology
 4OA3 A;  5ANP A;  3PTJ A;  3W5W A;  2Q9H A;  3PW9 A;  2H9F A;  1U0K A;  2YMA A;  1IR6 A;  1K20 A;  1XUB A;  4IJZ A;  5IWE A;  1BWZ A;  1YM5 A;  3ICJ A;  3DEV A;  2GKJ A;  2QB6 A;  4JBD A;  4RPA A;  4JUU A;  2PW0 A;  4LB0 A;  3EDN A;  1GQZ A;  4JCI A;  4Q60 A;  2IW4 A;  2MPB A;  1I74 A;  4LS9 A;  2EB0 A;  2PVZ A;  2KPT A;  1QY9 A;  1U1W A;  4J9W A;  2ZXO A;  1W61 A;  5M47 A;  4JD7 A;  1SDJ A;  4K8L A;  3EJX A;  1XUA A;  2GKE A;  1T6K A;  2ENX A;  3G7K A;  4Q2H A;  2HAW A;  4LG3 A;  4DUN A;  3WQZ A;  5H2Y A;  1WPP A;  4IK0 A;  2OTN A;  1WPM A;  1QYA A;  1W62 A;  1U1V A;  1S7J A;  2QB8 A;  5HA4 A;  3IGH X;  4K7X A;  2AZP A;  2ZVF A;  4K7G B;  4PY9 A;  5H2G A;  4GL6 A;  2KW7 A;  3FVE A;  2Q9J A;  1K23 A;  3PVH A;  4J9X A;  3EKM A;  2LT2 A;  1U1X A;  2QB7 A;  3G98 A;  1TM0 A;  2ZXR A;  2ZXP A; 
#chains in the Genus database with same CATH homology
 4OA3 A;  5ANP A;  3PTJ A;  3W5W A;  2Q9H A;  3PW9 A;  2H9F A;  1U0K A;  2YMA A;  1IR6 A;  1K20 A;  1XUB A;  4IJZ A;  5IWE A;  1BWZ A;  1YM5 A;  3ICJ A;  3DEV A;  2GKJ A;  2QB6 A;  4JBD A;  4RPA A;  4JUU A;  2PW0 A;  4LB0 A;  3EDN A;  1GQZ A;  4JCI A;  4Q60 A;  2IW4 A;  2MPB A;  1I74 A;  4LS9 A;  2EB0 A;  2PVZ A;  2KPT A;  1QY9 A;  1U1W A;  4J9W A;  2ZXO A;  1W61 A;  5M47 A;  4JD7 A;  1SDJ A;  4K8L A;  3EJX A;  1XUA A;  2GKE A;  1T6K A;  2ENX A;  3G7K A;  4Q2H A;  2HAW A;  4LG3 A;  4DUN A;  3WQZ A;  5H2Y A;  1WPP A;  4IK0 A;  2OTN A;  1WPM A;  1QYA A;  1W62 A;  1U1V A;  1S7J A;  2QB8 A;  5HA4 A;  3IGH X;  4K7X A;  2AZP A;  2ZVF A;  4K7G B;  4PY9 A;  5H2G A;  4GL6 A;  2KW7 A;  3FVE A;  2Q9J A;  1K23 A;  3PVH A;  4J9X A;  3EKM A;  2LT2 A;  1U1X A;  2QB7 A;  3G98 A;  1TM0 A;  2ZXR A;  2ZXP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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