4JCIA

Crystal structure of csal_2705, a putative hydroxyproline epimerase from chromohalobacter salexigens (target efi-506486), space group p212121, unliganded
Total Genus 80
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
80
sequence length
313
structure length
312
Chain Sequence
YFQSMKRVHVIDSHTAGEPTRLVMEGMPALSGRTIAEKCDDFRDNHDAWRRAIMLEPRGHDVLVGALYCAPESSDASCGVIFFNNSGYLGMCGHGTIGLVASLHHLGQLTPGCHKIDTPAGPVSATLHDDGAVTVRNVLSYRHRRRVPVEVPGYGTVHGDIAWGGNWFFLVSDDMTLELDNVEALTDYTWAIRQALEAQSITGENGGVIDHIELFCDDREADSRNFVLCPGKAYDRSPCGTGTSAKLACLAADGKLAPGQVWTQASICGSRFEAFYEREGDGIRPSIKGRAYLSADATLLIDERDPFAWGIA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of csal_2705, a putative hydroxyproline epimerase from CHROMOHALOBACTER SALEXIGENS (TARGET EFI-506486), space group P212121, unliganded
rcsb
source organism Chromohalobacter salexigens
molecule tags Isomerase
molecule keywords Proline racemase
total genus 80
structure length 312
sequence length 313
chains with identical sequence B
ec nomenclature ec 5.1.1.8: 4-hydroxyproline epimerase.
pdb deposition date 2013-02-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05544 Pro_racemase Proline racemase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 4jciA02
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 4jciA01
1S7JA 4IJZA 3EJXA 1T6KA 2GKEA 2PVZA 1GQZA 4J9WA 2H9FA 1QY9A 4J9XA 5IWEA 4LB0A 4K8LA 2Q9HA 1U0KA 1U1VA 4K7GB 3FVEA 4Q60A 2GKJA 3EDNA 1TM0A 5H2GA 5HA4A 1W62A 1BWZA 4DUNA 2Q9JA 4K7XA 4JCIA 1U1WA 1YM5A 3EKMA 4IK0A 5M47A 1XUAA 4Q2HA 1XUBA 2OTNA 2PW0A 4JUUA 1U1XA 2AZPA 1QYAA 1W61A 3G7KA 4JBDA 1SDJA 5H2YA 4JD7A
chains in the Genus database with same CATH superfamily
2HAWA 3EJXA 2ZXRA 5IWEA 2Q9HA 1U1VA 3PTJA 1TM0A 4DUNA 2Q9JA 1U1WA 4IK0A 2QB7A 2PW0A 1U1XA 3G98A 3W5WA 2KPTA 3ICJA 1GQZA 4J9XA 3IGHX 1WPPA 4K8LA 1U0KA 3FVEA 3DEVA 2ZXOA 5HA4A 5H2GA 1W62A 4K7XA 5ANPA 1XUAA 4Q2HA 2AZPA 4PY9A 1IR6A 2QB6A 1S7JA 4IJZA 3PW9A 2GKEA 2PVZA 4J9WA 2H9FA 4LB0A 2EB0A 4K7GB 2ENXA 4Q60A 3EDNA 4LG3A 2QB8A 1WPMA 4OA3A 5M47A 1K20A 2MPBA 4GL6A 4JD7A 1I74A 4RPAA 2IW4A 1T6KA 3WQZA 1QY9A 2ZXPA 2YMAA 2ZVFA 2GKJA 4LS9A 1BWZA 3PVHA 4JCIA 1YM5A 3EKMA 1XUBA 2OTNA 1K23A 4JUUA 1QYAA 1W61A 3G7KA 4JBDA 1SDJA 2LT2A 5H2YA 2KW7A
chains in the Genus database with same CATH topology
2HAWA 3EJXA 2ZXRA 5IWEA 2Q9HA 1U1VA 3PTJA 1TM0A 4DUNA 2Q9JA 1U1WA 4IK0A 2QB7A 2PW0A 1U1XA 3G98A 3W5WA 2KPTA 3ICJA 1GQZA 4J9XA 3IGHX 1WPPA 4K8LA 1U0KA 3FVEA 3DEVA 2ZXOA 5HA4A 5H2GA 1W62A 4K7XA 5ANPA 1XUAA 4Q2HA 2AZPA 4PY9A 1IR6A 2QB6A 1S7JA 4IJZA 3PW9A 2GKEA 2PVZA 4J9WA 2H9FA 4LB0A 2EB0A 4K7GB 2ENXA 4Q60A 3EDNA 4LG3A 2QB8A 1WPMA 4OA3A 5M47A 1K20A 2MPBA 4GL6A 4JD7A 1I74A 4RPAA 2IW4A 1T6KA 3WQZA 1QY9A 2ZXPA 2YMAA 2ZVFA 2GKJA 4LS9A 1BWZA 3PVHA 4JCIA 1YM5A 3EKMA 1XUBA 2OTNA 1K23A 4JUUA 1QYAA 1W61A 3G7KA 4JBDA 1SDJA 2LT2A 5H2YA 2KW7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1S7J A;  4IJZ A;  3EJX A;  1T6K A;  2GKE A;  2PVZ A;  1GQZ A;  4J9W A;  2H9F A;  1QY9 A;  4J9X A;  5IWE A;  4LB0 A;  4K8L A;  2Q9H A;  1U0K A;  1U1V A;  4K7G B;  3FVE A;  4Q60 A;  2GKJ A;  3EDN A;  1TM0 A;  5H2G A;  5HA4 A;  1W62 A;  1BWZ A;  4DUN A;  2Q9J A;  4K7X A;  4JCI A;  1U1W A;  1YM5 A;  3EKM A;  4IK0 A;  5M47 A;  1XUA A;  4Q2H A;  1XUB A;  2OTN A;  2PW0 A;  4JUU A;  1U1X A;  2AZP A;  1QYA A;  1W61 A;  3G7K A;  4JBD A;  1SDJ A;  5H2Y A;  4JD7 A; 
#chains in the Genus database with same CATH topology
 2HAW A;  3EJX A;  2ZXR A;  5IWE A;  2Q9H A;  1U1V A;  3PTJ A;  1TM0 A;  4DUN A;  2Q9J A;  1U1W A;  4IK0 A;  2QB7 A;  2PW0 A;  1U1X A;  3G98 A;  3W5W A;  2KPT A;  3ICJ A;  1GQZ A;  4J9X A;  3IGH X;  1WPP A;  4K8L A;  1U0K A;  3FVE A;  3DEV A;  2ZXO A;  5HA4 A;  5H2G A;  1W62 A;  4K7X A;  5ANP A;  1XUA A;  4Q2H A;  2AZP A;  4PY9 A;  1IR6 A;  2QB6 A;  1S7J A;  4IJZ A;  3PW9 A;  2GKE A;  2PVZ A;  4J9W A;  2H9F A;  4LB0 A;  2EB0 A;  4K7G B;  2ENX A;  4Q60 A;  3EDN A;  4LG3 A;  2QB8 A;  1WPM A;  4OA3 A;  5M47 A;  1K20 A;  2MPB A;  4GL6 A;  4JD7 A;  1I74 A;  4RPA A;  2IW4 A;  1T6K A;  3WQZ A;  1QY9 A;  2ZXP A;  2YMA A;  2ZVF A;  2GKJ A;  4LS9 A;  1BWZ A;  3PVH A;  4JCI A;  1YM5 A;  3EKM A;  1XUB A;  2OTN A;  1K23 A;  4JUU A;  1QYA A;  1W61 A;  3G7K A;  4JBD A;  1SDJ A;  2LT2 A;  5H2Y A;  2KW7 A; 
#chains in the Genus database with same CATH homology
 2HAW A;  3EJX A;  2ZXR A;  5IWE A;  2Q9H A;  1U1V A;  3PTJ A;  1TM0 A;  4DUN A;  2Q9J A;  1U1W A;  4IK0 A;  2QB7 A;  2PW0 A;  1U1X A;  3G98 A;  3W5W A;  2KPT A;  3ICJ A;  1GQZ A;  4J9X A;  3IGH X;  1WPP A;  4K8L A;  1U0K A;  3FVE A;  3DEV A;  2ZXO A;  5HA4 A;  5H2G A;  1W62 A;  4K7X A;  5ANP A;  1XUA A;  4Q2H A;  2AZP A;  4PY9 A;  1IR6 A;  2QB6 A;  1S7J A;  4IJZ A;  3PW9 A;  2GKE A;  2PVZ A;  4J9W A;  2H9F A;  4LB0 A;  2EB0 A;  4K7G B;  2ENX A;  4Q60 A;  3EDN A;  4LG3 A;  2QB8 A;  1WPM A;  4OA3 A;  5M47 A;  1K20 A;  2MPB A;  4GL6 A;  4JD7 A;  1I74 A;  4RPA A;  2IW4 A;  1T6K A;  3WQZ A;  1QY9 A;  2ZXP A;  2YMA A;  2ZVF A;  2GKJ A;  4LS9 A;  1BWZ A;  3PVH A;  4JCI A;  1YM5 A;  3EKM A;  1XUB A;  2OTN A;  1K23 A;  4JUU A;  1QYA A;  1W61 A;  3G7K A;  4JBD A;  1SDJ A;  2LT2 A;  5H2Y A;  2KW7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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