4JCVA

Crystal structure of the recor complex in an open conformation
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
196
structure length
196
Chain Sequence
KYPPSLVSLIRELSRLPGIGPASAQALAFHLFEQPREDIERLASALLEAKRDLHVCPICFNITDAEKCDVCADPSRDQRTICVVEEPGDVIALERSGEYRGLYHVLHGVLSPMNGVGPDKLHIKPLLPRVGQGMEVILATGTTVEGDATALYLQRLLEPLGAAISRIAYGVPVGGSLEYTDEVTLGRALTGRQTVS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Recombination protein RecR
publication title An 'open' structure of the RecOR complex supports ssDNA binding within the core of the complex.
pubmed doi rcsb
source organism Deinococcus radiodurans
molecule tags Recombination
total genus 50
structure length 196
sequence length 196
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2013-02-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01751 Toprim Toprim domain
A PF02132 RecR RecR protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1360.10 Alpha Beta 3-Layer(aba) Sandwich Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 4jcvA01
1EQNA 4EDTA 5GUJA 4EDVA 3VDPA 4E2KA 2AU3A 2Q2EA 3VE5A 1VDDA 4EE1A 4EDRA 4EDKA 4O6OA 4EDGA 2V1CA 1DD9A 4O6PB 2ZBKA 3B39A 4JCVA 1DDEA 1D3YA 3VDUA 1T6T1
chains in the Genus database with same CATH superfamily
1EQNA 4EDTA 2FCJA 5GUJA 4EDVA 3VDPA 4E2KA 2AU3A 2Q2EA 3VE5A 1VDDA 4EE1A 4EDRA 4EDKA 4O6OA 4EDGA 2V1CA 1DD9A 4O6PB 2ZBKA 3B39A 2I5RA 4JCVA 1DDEA 1D3YA 3VDUA 1T6T1
chains in the Genus database with same CATH topology
1EQNA 4EDTA 5GUJA 4EDVA 3VDPA 4E2KA 2AU3A 2Q2EA 3VE5A 1VDDA 4EE1A 4EDRA 4EDKA 4O6OA 4EDGA 2V1CA 1DD9A 4O6PB 2ZBKA 3B39A 4JCVA 1DDEA 1D3YA 3VDUA 1T6T1
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EQN A;  4EDT A;  5GUJ A;  4EDV A;  3VDP A;  4E2K A;  2AU3 A;  2Q2E A;  3VE5 A;  1VDD A;  4EE1 A;  4EDR A;  4EDK A;  4O6O A;  4EDG A;  2V1C A;  1DD9 A;  4O6P B;  2ZBK A;  3B39 A;  4JCV A;  1DDE A;  1D3Y A;  3VDU A;  1T6T 1; 
#chains in the Genus database with same CATH topology
 1EQN A;  4EDT A;  2FCJ A;  5GUJ A;  4EDV A;  3VDP A;  4E2K A;  2AU3 A;  2Q2E A;  3VE5 A;  1VDD A;  4EE1 A;  4EDR A;  4EDK A;  4O6O A;  4EDG A;  2V1C A;  1DD9 A;  4O6P B;  2ZBK A;  3B39 A;  2I5R A;  4JCV A;  1DDE A;  1D3Y A;  3VDU A;  1T6T 1; 
#chains in the Genus database with same CATH homology
 1EQN A;  4EDT A;  5GUJ A;  4EDV A;  3VDP A;  4E2K A;  2AU3 A;  2Q2E A;  3VE5 A;  1VDD A;  4EE1 A;  4EDR A;  4EDK A;  4O6O A;  4EDG A;  2V1C A;  1DD9 A;  4O6P B;  2ZBK A;  3B39 A;  4JCV A;  1DDE A;  1D3Y A;  3VDU A;  1T6T 1; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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