4JCVA

Crystal structure of the recor complex in an open conformation
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
196
structure length
196
Chain Sequence
b'KYPPSLVSLIRELSRLPGIGPASAQALAFHLFEQPREDIERLASALLEAKRDLHVCPICFNITDAEKCDVCADPSRDQRTICVVEEPGDVIALERSGEYRGLYHVLHGVLSPMNGVGPDKLHIKPLLPRVGQGMEVILATGTTVEGDATALYLQRLLEPLGAAISRIAYGVPVGGSLEYTDEVTLGRALTGRQTVS'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Recombination protein RecR
publication title An 'open' structure of the RecOR complex supports ssDNA binding within the core of the complex.
pubmed doi rcsb
source organism Deinococcus radiodurans
molecule tags Recombination
total genus 50
structure length 196
sequence length 196
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2013-02-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01751 Toprim Toprim domain
A PF02132 RecR RecR protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1360.10 Alpha Beta 3-Layer(aba) Sandwich Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 4jcvA01
1VDDA 2Q2EA 2ZBKA 4EDVA 2V1CA 4O6PB 3B39A 2AU3A 4E2KA 4O6OA 1D3YA 4EE1A 4EDRA 5GUJA 4EDTA 1DDEA 1DD9A 4EDKA 1T6T1 3VE5A 3VDUA 1EQNA 3VDPA 4EDGA 4JCVA
chains in the Genus database with same CATH superfamily
1VDDA 2Q2EA 2ZBKA 4EDVA 2V1CA 4O6PB 3B39A 2AU3A 4E2KA 4O6OA 1D3YA 4EE1A 4EDRA 2FCJA 5GUJA 2I5RA 4EDTA 1DDEA 1DD9A 4EDKA 1T6T1 3VE5A 3VDUA 1EQNA 3VDPA 4EDGA 4JCVA
chains in the Genus database with same CATH topology
1VDDA 2Q2EA 2ZBKA 4EDVA 2V1CA 4O6PB 3B39A 2AU3A 4E2KA 4O6OA 1D3YA 4EE1A 4EDRA 5GUJA 4EDTA 1DDEA 1DD9A 4EDKA 1T6T1 3VE5A 3VDUA 1EQNA 3VDPA 4EDGA 4JCVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VDD A;  2Q2E A;  2ZBK A;  4EDV A;  2V1C A;  4O6P B;  3B39 A;  2AU3 A;  4E2K A;  4O6O A;  1D3Y A;  4EE1 A;  4EDR A;  5GUJ A;  4EDT A;  1DDE A;  1DD9 A;  4EDK A;  1T6T 1;  3VE5 A;  3VDU A;  1EQN A;  3VDP A;  4EDG A;  4JCV A; 
#chains in the Genus database with same CATH topology
 1VDD A;  2Q2E A;  2ZBK A;  4EDV A;  2V1C A;  4O6P B;  3B39 A;  2AU3 A;  4E2K A;  4O6O A;  1D3Y A;  4EE1 A;  4EDR A;  2FCJ A;  5GUJ A;  2I5R A;  4EDT A;  1DDE A;  1DD9 A;  4EDK A;  1T6T 1;  3VE5 A;  3VDU A;  1EQN A;  3VDP A;  4EDG A;  4JCV A; 
#chains in the Genus database with same CATH homology
 1VDD A;  2Q2E A;  2ZBK A;  4EDV A;  2V1C A;  4O6P B;  3B39 A;  2AU3 A;  4E2K A;  4O6O A;  1D3Y A;  4EE1 A;  4EDR A;  5GUJ A;  4EDT A;  1DDE A;  1DD9 A;  4EDK A;  1T6T 1;  3VE5 A;  3VDU A;  1EQN A;  3VDP A;  4EDG A;  4JCV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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