4JDGA

Structure of tomato bifunctional nuclease tbn1, variant n211d
Total Genus 101
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
101
sequence length
266
structure length
266
Chain Sequence
WSKEGHVMTCRIAQGLLNDEAAHAVKMLLPEYVNGDLSALCVWPDQVRHWYKYKWTSPLHFIDTPDKACNFDYERDCHDQHGVKDMCVAGAIQNFTTQLSHYREGTSDRRYNMTEALLFLSHFMGDIHQPMHVGFTSDAGGNSIDLRWFRHKSNLHHVWDREIILTAAKDYYAKDINLLEEDIEGDFTDGIWSDDLASWRECGNVFSCVNKFATESINIACKWGYKGVEAGETLSDDYFNSRLPIVMKRVAQGGIRLAMLLNNVFG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Nuclease
publication title Phosphate binding in the active centre of tomato multifunctional nuclease TBN1 and analysis of superhelix formation by the enzyme
pubmed doi rcsb
source organism Solanum lycopersicum
total genus 101
structure length 266
sequence length 266
ec nomenclature ec 3.1.30.-:
pdb deposition date 2013-02-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02265 S1-P1_nuclease S1/P1 Nuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.575.10 Mainly Alpha Orthogonal Bundle P1 Nuclease P1 Nuclease 4jdgA00
1P6DA 4CXOA 5FBAA 2WXUA 2FFZA 2HUCA 4JDGA 5FBBA 2WY6A 1AH7A 1OLPA 1P6EA 4CWMA 1QMDA 5FBGA 2WXTA 1CA1A 1P5XA 2FGNA 3SNGA 3W52A 1QM6A 1KHOA 5FBFA 5FBDA 4DJ4A 5FB9A 4CXVA 1GYGA 5FBCA 4CXPA 1AK0A
chains in the Genus database with same CATH superfamily
1P6DA 4CXOA 5FBAA 2WXUA 2FFZA 2HUCA 4JDGA 5FBBA 2WY6A 1AH7A 1OLPA 1P6EA 4CWMA 1QMDA 5FBGA 2WXTA 1CA1A 1P5XA 2FGNA 3SNGA 3W52A 1QM6A 1KHOA 5FBFA 5FBDA 4DJ4A 5FB9A 4CXVA 1GYGA 5FBCA 4CXPA 1AK0A
chains in the Genus database with same CATH topology
1P6DA 4CXOA 5FBAA 2WXUA 2FFZA 2HUCA 4JDGA 5FBBA 2WY6A 1AH7A 1OLPA 1P6EA 4CWMA 1QMDA 5FBGA 2WXTA 1CA1A 1P5XA 2FGNA 3SNGA 3W52A 1QM6A 1KHOA 5FBFA 5FBDA 4DJ4A 5FB9A 4CXVA 1GYGA 5FBCA 4CXPA 1AK0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1P6D A;  4CXO A;  5FBA A;  2WXU A;  2FFZ A;  2HUC A;  4JDG A;  5FBB A;  2WY6 A;  1AH7 A;  1OLP A;  1P6E A;  4CWM A;  1QMD A;  5FBG A;  2WXT A;  1CA1 A;  1P5X A;  2FGN A;  3SNG A;  3W52 A;  1QM6 A;  1KHO A;  5FBF A;  5FBD A;  4DJ4 A;  5FB9 A;  4CXV A;  1GYG A;  5FBC A;  4CXP A;  1AK0 A; 
#chains in the Genus database with same CATH topology
 1P6D A;  4CXO A;  5FBA A;  2WXU A;  2FFZ A;  2HUC A;  4JDG A;  5FBB A;  2WY6 A;  1AH7 A;  1OLP A;  1P6E A;  4CWM A;  1QMD A;  5FBG A;  2WXT A;  1CA1 A;  1P5X A;  2FGN A;  3SNG A;  3W52 A;  1QM6 A;  1KHO A;  5FBF A;  5FBD A;  4DJ4 A;  5FB9 A;  4CXV A;  1GYG A;  5FBC A;  4CXP A;  1AK0 A; 
#chains in the Genus database with same CATH homology
 1P6D A;  4CXO A;  5FBA A;  2WXU A;  2FFZ A;  2HUC A;  4JDG A;  5FBB A;  2WY6 A;  1AH7 A;  1OLP A;  1P6E A;  4CWM A;  1QMD A;  5FBG A;  2WXT A;  1CA1 A;  1P5X A;  2FGN A;  3SNG A;  3W52 A;  1QM6 A;  1KHO A;  5FBF A;  5FBD A;  4DJ4 A;  5FB9 A;  4CXV A;  1GYG A;  5FBC A;  4CXP A;  1AK0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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