4JGHC

Structure of the socs2-elongin bc complex bound to an n-terminal fragment of cullin5
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
96
structure length
96
Chain Sequence
MYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIPLELLMAANFLDC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ligase
molecule keywords Suppressor of cytokine signaling 2
publication title Structural basis of intersubunit recognition in elongin BC-cullin 5-SOCS box ubiquitin-protein ligase complexes.
pubmed doi rcsb
source organism Homo sapiens
total genus 25
structure length 96
sequence length 96
ec nomenclature
pdb deposition date 2013-03-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF03931 Skp1_POZ Skp1 family, tetramerisation domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.710.10 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1; Chain A Potassium Channel Kv1.1; Chain A 4jghC00
4CXJA 3C6OA 2P1MA 1EOEA 4BKTB 4CXTA 3C6PA 1HV2A 2R9RB 4U2NA 5HYWB 1S1GA 3LNMB 4B9KB 1R2BA 3ZTDB 3HVEA 2IF5A 3MKSA 4W9JB 5BO4C 1NEXA 2MA9C 3HVEB 5EUPA 5HZGC 4UYIA 4B9KE 3L2OA 4EOZA 3GA1A 3OGKA 4JTAB 3ZUNB 2P1PA 1NN7A 3B84A 2E31B 3BIMA 2E32B 3ZRFB 4BGCA 3HQIA 2P1NA 3ZKJB 5A6RA 4JTCB 4W9FB 3KVTA 1QDWA 3I3NA 4W9HB 1R29A 3V7DA 1LM8C 2PPIA 2IZVC 3OHUA 4ZOUA 4W9CB 4AWJB 3M52A 2OVQA 3M5BA 4U77A 4U2MA 4B95B 4AP2A 5BXHA 5JH5B 2C9WC 1EODA 2JZ3C 2P1OA 2P1QA 3E4UA 3DCGB 1QDVA 3OGLA 3OGMA 4W9IB 4CP3A 4WQOC 3WSOB 2Q81A 3ZNGB 4JTDB 1P22B 1A68A 1DSXA 2VPKA 4CXIA 2Z8HA 1VCBB 3ZTCB 2VKPA 2YY9A 4AJYC 1FS2B 1R28A 3LUTB 4UIJA 1CS3A 3M8VA 2ASSA 3HU6A 5H7GA 5LLIB 2OVRA 3LBZA 5DADA 4N9F5 5DAFA 5BXBA 5FTAA 1T1DA 4W9KB 4W9GB 5IBKA 2I2RA 3OHVA 5A15A 2A79B 1BUOA 4W9EB 4JGHC 1FQVB 4I6JC 4W9LB 3ZRCB 4J8ZA 2IHCA 4W9DB 2ASTA 3HTMA 3DRZA 1LDKD 2NN2A 2OVPA 2FNJC 4W9HH 4CRHA 3M4TA 5H7HA 1EXBE 4APFA 1LQBB 4HXIA 2NZ0B 1FS1B 5BXDA 4BKSB 3FKCA 3C6NA 1EOFA
chains in the Genus database with same CATH superfamily
4CXJA 3C6OA 2P1MA 1EOEA 4BKTB 4CXTA 3C6PA 1HV2A 2R9RB 4U2NA 5HYWB 1S1GA 3LNMB 4B9KB 1R2BA 3ZTDB 3HVEA 2IF5A 3MKSA 4W9JB 5BO4C 1NEXA 2MA9C 3HVEB 5EUPA 5HZGC 4UYIA 4B9KE 3L2OA 4EOZA 3GA1A 3OGKA 4JTAB 3ZUNB 2P1PA 1NN7A 3B84A 2E31B 3BIMA 2E32B 3ZRFB 4BGCA 3HQIA 2P1NA 3ZKJB 5A6RA 4JTCB 4W9FB 3KVTA 1QDWA 3I3NA 4W9HB 1R29A 3V7DA 1LM8C 2PPIA 2IZVC 3OHUA 4ZOUA 4W9CB 4ZGCA 4AWJB 3M52A 2OVQA 3M5BA 4U77A 4U2MA 4B95B 4AP2A 5BXHA 5JH5B 2C9WC 1EODA 2JZ3C 2P1OA 2P1QA 3E4UA 3DCGB 1QDVA 3OGLA 3OGMA 3DRXA 4W9IB 4CP3A 4WQOC 3WSOB 2Q81A 3ZNGB 4JTDB 1P22B 1A68A 1DSXA 2VPKA 4CXIA 2Z8HA 1VCBB 3ZTCB 2VKPA 2YY9A 4AJYC 1FS2B 1R28A 3LUTB 4UIJA 1CS3A 3M8VA 2ASSA 3HU6A 5H7GA 5LLIB 2OVRA 3LBZA 5DADA 4N9F5 5DAFA 4YY8A 5BXBA 5FTAA 1T1DA 4W9KB 4W9GB 5IBKA 2I2RA 3OHVA 5A15A 2A79B 1BUOA 4W9EB 4JGHC 1FQVB 4I6JC 4W9LB 3ZRCB 4J8ZA 2IHCA 4W9DB 2ASTA 3HTMA 3DRZA 1LDKD 2NN2A 2OVPA 2FNJC 4W9HH 4CRHA 3M4TA 5H7HA 1EXBE 4APFA 1LQBB 3DRYA 4HXIA 2NZ0B 1FS1B 5BXDA 4BKSB 3FKCA 3C6NA 1EOFA
chains in the Genus database with same CATH topology
4CXJA 3C6OA 2P1MA 1EOEA 4BKTB 4CXTA 3C6PA 1HV2A 2R9RB 4U2NA 5HYWB 1S1GA 3LNMB 4B9KB 1R2BA 3ZTDB 3HVEA 2IF5A 3MKSA 4W9JB 5BO4C 1NEXA 2MA9C 3HVEB 5EUPA 5HZGC 4UYIA 4B9KE 3L2OA 4EOZA 3GA1A 3OGKA 4JTAB 3ZUNB 2P1PA 1NN7A 3B84A 2E31B 3BIMA 2E32B 3ZRFB 4BGCA 3HQIA 2P1NA 3ZKJB 5A6RA 4JTCB 4W9FB 3KVTA 1QDWA 3I3NA 4W9HB 1R29A 3V7DA 1LM8C 2PPIA 2IZVC 3OHUA 4ZOUA 4W9CB 4ZGCA 4AWJB 3M52A 2OVQA 3M5BA 4U77A 4U2MA 4B95B 4AP2A 5BXHA 5JH5B 2C9WC 1EODA 2JZ3C 2P1OA 2P1QA 3E4UA 3DCGB 1QDVA 3OGLA 3OGMA 3DRXA 4W9IB 4CP3A 4WQOC 3WSOB 2Q81A 3ZNGB 4JTDB 1P22B 1A68A 1DSXA 2VPKA 4CXIA 2Z8HA 1VCBB 3ZTCB 2VKPA 2YY9A 4AJYC 1FS2B 1R28A 3LUTB 4UIJA 1CS3A 3M8VA 2ASSA 3HU6A 5H7GA 5LLIB 2OVRA 3LBZA 5DADA 4N9F5 5DAFA 4YY8A 5BXBA 5FTAA 1T1DA 4W9KB 4W9GB 5IBKA 2I2RA 3OHVA 5A15A 2A79B 1BUOA 4W9EB 4JGHC 1FQVB 4I6JC 4W9LB 3ZRCB 4J8ZA 2IHCA 4W9DB 2ASTA 3HTMA 3DRZA 1LDKD 2NN2A 2OVPA 2FNJC 4W9HH 4CRHA 3M4TA 5H7HA 1EXBE 4APFA 1LQBB 3DRYA 4HXIA 2NZ0B 1FS1B 5BXDA 4BKSB 3FKCA 3C6NA 1EOFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4CXJ A;  3C6O A;  2P1M A;  1EOE A;  4BKT B;  4CXT A;  3C6P A;  1HV2 A;  2R9R B;  4U2N A;  5HYW B;  1S1G A;  3LNM B;  4B9K B;  1R2B A;  3ZTD B;  3HVE A;  2IF5 A;  3MKS A;  4W9J B;  5BO4 C;  1NEX A;  2MA9 C;  3HVE B;  5EUP A;  5HZG C;  4UYI A;  4B9K E;  3L2O A;  4EOZ A;  3GA1 A;  3OGK A;  4JTA B;  3ZUN B;  2P1P A;  1NN7 A;  3B84 A;  2E31 B;  3BIM A;  2E32 B;  3ZRF B;  4BGC A;  3HQI A;  2P1N A;  3ZKJ B;  5A6R A;  4JTC B;  4W9F B;  3KVT A;  1QDW A;  3I3N A;  4W9H B;  1R29 A;  3V7D A;  1LM8 C;  2PPI A;  2IZV C;  3OHU A;  4ZOU A;  4W9C B;  4AWJ B;  3M52 A;  2OVQ A;  3M5B A;  4U77 A;  4U2M A;  4B95 B;  4AP2 A;  5BXH A;  5JH5 B;  2C9W C;  1EOD A;  2JZ3 C;  2P1O A;  2P1Q A;  3E4U A;  3DCG B;  1QDV A;  3OGL A;  3OGM A;  4W9I B;  4CP3 A;  4WQO C;  3WSO B;  2Q81 A;  3ZNG B;  4JTD B;  1P22 B;  1A68 A;  1DSX A;  2VPK A;  4CXI A;  2Z8H A;  1VCB B;  3ZTC B;  2VKP A;  2YY9 A;  4AJY C;  1FS2 B;  1R28 A;  3LUT B;  4UIJ A;  1CS3 A;  3M8V A;  2ASS A;  3HU6 A;  5H7G A;  5LLI B;  2OVR A;  3LBZ A;  5DAD A;  4N9F 5;  5DAF A;  5BXB A;  5FTA A;  1T1D A;  4W9K B;  4W9G B;  5IBK A;  2I2R A;  3OHV A;  5A15 A;  2A79 B;  1BUO A;  4W9E B;  4JGH C;  1FQV B;  4I6J C;  4W9L B;  3ZRC B;  4J8Z A;  2IHC A;  4W9D B;  2AST A;  3HTM A;  3DRZ A;  1LDK D;  2NN2 A;  2OVP A;  2FNJ C;  4W9H H;  4CRH A;  3M4T A;  5H7H A;  1EXB E;  4APF A;  1LQB B;  4HXI A;  2NZ0 B;  1FS1 B;  5BXD A;  4BKS B;  3FKC A;  3C6N A;  1EOF A; 
#chains in the Genus database with same CATH topology
 4CXJ A;  3C6O A;  2P1M A;  1EOE A;  4BKT B;  4CXT A;  3C6P A;  1HV2 A;  2R9R B;  4U2N A;  5HYW B;  1S1G A;  3LNM B;  4B9K B;  1R2B A;  3ZTD B;  3HVE A;  2IF5 A;  3MKS A;  4W9J B;  5BO4 C;  1NEX A;  2MA9 C;  3HVE B;  5EUP A;  5HZG C;  4UYI A;  4B9K E;  3L2O A;  4EOZ A;  3GA1 A;  3OGK A;  4JTA B;  3ZUN B;  2P1P A;  1NN7 A;  3B84 A;  2E31 B;  3BIM A;  2E32 B;  3ZRF B;  4BGC A;  3HQI A;  2P1N A;  3ZKJ B;  5A6R A;  4JTC B;  4W9F B;  3KVT A;  1QDW A;  3I3N A;  4W9H B;  1R29 A;  3V7D A;  1LM8 C;  2PPI A;  2IZV C;  3OHU A;  4ZOU A;  4W9C B;  4ZGC A;  4AWJ B;  3M52 A;  2OVQ A;  3M5B A;  4U77 A;  4U2M A;  4B95 B;  4AP2 A;  5BXH A;  5JH5 B;  2C9W C;  1EOD A;  2JZ3 C;  2P1O A;  2P1Q A;  3E4U A;  3DCG B;  1QDV A;  3OGL A;  3OGM A;  3DRX A;  4W9I B;  4CP3 A;  4WQO C;  3WSO B;  2Q81 A;  3ZNG B;  4JTD B;  1P22 B;  1A68 A;  1DSX A;  2VPK A;  4CXI A;  2Z8H A;  1VCB B;  3ZTC B;  2VKP A;  2YY9 A;  4AJY C;  1FS2 B;  1R28 A;  3LUT B;  4UIJ A;  1CS3 A;  3M8V A;  2ASS A;  3HU6 A;  5H7G A;  5LLI B;  2OVR A;  3LBZ A;  5DAD A;  4N9F 5;  5DAF A;  4YY8 A;  5BXB A;  5FTA A;  1T1D A;  4W9K B;  4W9G B;  5IBK A;  2I2R A;  3OHV A;  5A15 A;  2A79 B;  1BUO A;  4W9E B;  4JGH C;  1FQV B;  4I6J C;  4W9L B;  3ZRC B;  4J8Z A;  2IHC A;  4W9D B;  2AST A;  3HTM A;  3DRZ A;  1LDK D;  2NN2 A;  2OVP A;  2FNJ C;  4W9H H;  4CRH A;  3M4T A;  5H7H A;  1EXB E;  4APF A;  1LQB B;  3DRY A;  4HXI A;  2NZ0 B;  1FS1 B;  5BXD A;  4BKS B;  3FKC A;  3C6N A;  1EOF A; 
#chains in the Genus database with same CATH homology
 4CXJ A;  3C6O A;  2P1M A;  1EOE A;  4BKT B;  4CXT A;  3C6P A;  1HV2 A;  2R9R B;  4U2N A;  5HYW B;  1S1G A;  3LNM B;  4B9K B;  1R2B A;  3ZTD B;  3HVE A;  2IF5 A;  3MKS A;  4W9J B;  5BO4 C;  1NEX A;  2MA9 C;  3HVE B;  5EUP A;  5HZG C;  4UYI A;  4B9K E;  3L2O A;  4EOZ A;  3GA1 A;  3OGK A;  4JTA B;  3ZUN B;  2P1P A;  1NN7 A;  3B84 A;  2E31 B;  3BIM A;  2E32 B;  3ZRF B;  4BGC A;  3HQI A;  2P1N A;  3ZKJ B;  5A6R A;  4JTC B;  4W9F B;  3KVT A;  1QDW A;  3I3N A;  4W9H B;  1R29 A;  3V7D A;  1LM8 C;  2PPI A;  2IZV C;  3OHU A;  4ZOU A;  4W9C B;  4ZGC A;  4AWJ B;  3M52 A;  2OVQ A;  3M5B A;  4U77 A;  4U2M A;  4B95 B;  4AP2 A;  5BXH A;  5JH5 B;  2C9W C;  1EOD A;  2JZ3 C;  2P1O A;  2P1Q A;  3E4U A;  3DCG B;  1QDV A;  3OGL A;  3OGM A;  3DRX A;  4W9I B;  4CP3 A;  4WQO C;  3WSO B;  2Q81 A;  3ZNG B;  4JTD B;  1P22 B;  1A68 A;  1DSX A;  2VPK A;  4CXI A;  2Z8H A;  1VCB B;  3ZTC B;  2VKP A;  2YY9 A;  4AJY C;  1FS2 B;  1R28 A;  3LUT B;  4UIJ A;  1CS3 A;  3M8V A;  2ASS A;  3HU6 A;  5H7G A;  5LLI B;  2OVR A;  3LBZ A;  5DAD A;  4N9F 5;  5DAF A;  4YY8 A;  5BXB A;  5FTA A;  1T1D A;  4W9K B;  4W9G B;  5IBK A;  2I2R A;  3OHV A;  5A15 A;  2A79 B;  1BUO A;  4W9E B;  4JGH C;  1FQV B;  4I6J C;  4W9L B;  3ZRC B;  4J8Z A;  2IHC A;  4W9D B;  2AST A;  3HTM A;  3DRZ A;  1LDK D;  2NN2 A;  2OVP A;  2FNJ C;  4W9H H;  4CRH A;  3M4T A;  5H7H A;  1EXB E;  4APF A;  1LQB B;  3DRY A;  4HXI A;  2NZ0 B;  1FS1 B;  5BXD A;  4BKS B;  3FKC A;  3C6N A;  1EOF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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