4JIUA

Crystal structure of the metallopeptidase zymogen of pyrococcus abyssi abylysin
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
105
structure length
105
Chain Sequence
MVEDLLEHAKDILGYQRPVKVRIRPLKMSIARVSFKYGTITLDPAVLNLEEEEMFYILIHELAHLKAETSYHSSSFWREVEKVFPGERAKEIEDRIMTKLQRNMV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Proabylysin
publication title A novel family of soluble minimal scaffolds provides structural insight into the catalytic domains of integral membrane metallopeptidases
pubmed doi rcsb
source organism Pyrococcus abyssi
total genus 37
structure length 105
sequence length 105
ec nomenclature
pdb deposition date 2013-03-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01863 DUF45 Protein of unknown function DUF45
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.2010.10 Alpha Beta 2-Layer Sandwich Zincin-like Metalloproteases ("zincins"), catalytic domain 4jiuA00
4QHFA 4JIUA 4IL3A 2YPTA 4AW6A 4JIXA 3CQBA
chains in the Genus database with same CATH superfamily
2G7PA 3E11A 3QIZA 2G7NA 2YPTA 3V0BA 2ISEA 3V0BB 3QW5A 1S0BA 1XTGA 1I1EA 3FIEA 4AW6A 1T3AA 1ZB7A 4JIUA 2ETFA 3BWIA 1F82A 3QW7A 1YVGA 3DDBA 3QJ0A 1ZL5A 2NYYA 3FIIA 2ISHA 2ILPA 2XHLA 3QW6A 3C8BA 4JIXA 3D3XA 1G9DA 3DS9A 3ZUSA 3QIXA 3ZUQA 4EL4A 3ZURA 1S0DA 2NZ9A 3CQBA 3BOKA 1ZKXA 4KTXA 2NP0A 3VUOA 1Z7HA 5BQMA 1T3CA 4IL3A 4ELCA 3BOOA 3DDAA 3QIYA 3DSEA 2G7KA 1EPWA 2FPQA 4EJ5A 2IMCA 1XTFA 3V0AA 2W2DA 4ZJXA 3V0AB 2IMAA 3BONA 3K3QB 3C89A 1F31A 2A97A 1G9CA 3NF3A 4J1LA 3DEBA 1ZKWA 1ZL6A 1S0EA 3C88A 1ZN3A 1E1HA 1G9BA 1S0GA 2G7QA 5BQNA 1G9AA 2IMBA 1S0CA 4KS6A 4ZKTB 4HEVA 3C8AA 3FFZA 3BTAA 2ISGA 4KUFA 4QHFA 1S0FA 3QW8A 2EJQA 2QN0A 2A8AA
chains in the Genus database with same CATH topology
1OZ9A 4QHFA 4JIUA 4IL3A 2YPTA 4AW6A 4JIXA 1TVIA 1XM5A 3CQBA 1XAXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4QHF A;  4JIU A;  4IL3 A;  2YPT A;  4AW6 A;  4JIX A;  3CQB A; 
#chains in the Genus database with same CATH topology
 2G7P A;  3E11 A;  3QIZ A;  2G7N A;  2YPT A;  3V0B A;  2ISE A;  3V0B B;  3QW5 A;  1S0B A;  1XTG A;  1I1E A;  3FIE A;  4AW6 A;  1T3A A;  1ZB7 A;  4JIU A;  2ETF A;  3BWI A;  1F82 A;  3QW7 A;  1YVG A;  3DDB A;  3QJ0 A;  1ZL5 A;  2NYY A;  3FII A;  2ISH A;  2ILP A;  2XHL A;  3QW6 A;  3C8B A;  4JIX A;  3D3X A;  1G9D A;  3DS9 A;  3ZUS A;  3QIX A;  3ZUQ A;  4EL4 A;  3ZUR A;  1S0D A;  2NZ9 A;  3CQB A;  3BOK A;  1ZKX A;  4KTX A;  2NP0 A;  3VUO A;  1Z7H A;  5BQM A;  1T3C A;  4IL3 A;  4ELC A;  3BOO A;  3DDA A;  3QIY A;  3DSE A;  2G7K A;  1EPW A;  2FPQ A;  4EJ5 A;  2IMC A;  1XTF A;  3V0A A;  2W2D A;  4ZJX A;  3V0A B;  2IMA A;  3BON A;  3K3Q B;  3C89 A;  1F31 A;  2A97 A;  1G9C A;  3NF3 A;  4J1L A;  3DEB A;  1ZKW A;  1ZL6 A;  1S0E A;  3C88 A;  1ZN3 A;  1E1H A;  1G9B A;  1S0G A;  2G7Q A;  5BQN A;  1G9A A;  2IMB A;  1S0C A;  4KS6 A;  4ZKT B;  4HEV A;  3C8A A;  3FFZ A;  3BTA A;  2ISG A;  4KUF A;  4QHF A;  1S0F A;  3QW8 A;  2EJQ A;  2QN0 A;  2A8A A; 
#chains in the Genus database with same CATH homology
 1OZ9 A;  4QHF A;  4JIU A;  4IL3 A;  2YPT A;  4AW6 A;  4JIX A;  1TVI A;  1XM5 A;  3CQB A;  1XAX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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