4JIWD

C1882 paar-repeat protein from escherichia coli in complex with a vgrg-like beta-helix that is based on a fragment of t4 gp5
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
93
structure length
93
Chain Sequence
PLAAKLTDKGTQHDGYYETVITAGSSTVFIDGLPAARQEDPLTPHDKPKHPPHPRKIARGSSTVFIDGLPAARTGDAIDCGGVVIGGGTVNIG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/protein binding
molecule keywords Tail-associated lysozyme
publication title PAAR-repeat proteins sharpen and diversify the type VI secretion system spike.
pubmed doi rcsb
source organism Enterobacteria phage t4
total genus 19
structure length 93
sequence length 93
chains with identical sequence H, L, P
ec nomenclature
pdb deposition date 2013-03-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF05488 PAAR_motif PAAR motif
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.200.60 Mainly Beta Sandwich Tumour Suppressor Smad4 Tumour Suppressor Smad4 4jiwD00
4KU0D 4JIVD 4JIWD
chains in the Genus database with same CATH superfamily
5DHTA 1QWTA 2QV7A 3UOTA 3V8RA 3DITA 3V8PA 4EGXA 1WLNA 1Y3HA 1YJMA 3UMZA 4V24A 2I2CA 2I29A 5JEJA 2Q5FA 1J4KA 4R9PA 2W3OA 5DHSA 4L02A 4WERA 2JQJA 3MDBA 1KHUA 4G2SA 1YT5A 1K3NA 5JEOA 4KU0D 1MZKA 1MJSA 3V7UA 1Z0UA 2AFFA 1J4PA 2XXSA 1R21A 5JELA 3VZCA 5JEKA 5EJHA 3VPYA 1UHTA 3T5PA 5DHRA 5EJFA 3GQSA 1LGQA 3GMJA 5DHQA 2EH0A 3V8QA 3V8NA 5C4VA 1ZOQA 2I2BA 2LC1A 1K3QA 3FM8A 4H87A 4JIWD 3PFNA 3OUNA 4A0EA 3VZDA 1KHXA 4D9VA 4JIVD 1DD1A 1U7VB 5JERA 2JPEA 1SUWA 5DHPA 3V80A 3I6UA 2P1RA 5A8IA 3UN0A 2I2AA 2KB3A 1J4OA 1G3GA 3A77A 3ELVA 5DJOA 1Y3IA 3V7YA 1Z0SA 2KFUA 2A0TA 1FHQA 2FF4A 3UNNA 3DSHA 1U7FB 4WRRA 2KB4A 1U7FA 3S40A 3VZBA 1LGPA 2XT9B 2I1WA 4JONA 3HX1A 3PO8A 1UJXA 3I0MA 1G6GA 1U7VA 2JQIA 2QVLA 1YJ5C 1Z0ZA 4A4YA 3HUFA 3VA4A 1J4QA 5EJGA 4HAOA 3ELSA 1MR1A 2JGRA 5EJIA 3HUEA 2G1LA 3KT9A 2BRFA 1J2FA 1GXCA 5BVIA 1DEVA 2BONA 3I6WA 4EJQA 5E50A 3V7WA 5DHUA 1J4LA 1YGSA 1WV3A 3VA1A 1MK2A 1K2MA 2AN1A 3POAA 2I2FA 2JKDA 2JQLA 1FHRA 4QCJA 1G88A 1U0TA 3V8MA 1K2NA 3UV0A 3UNMA 1DMZA 2FEZA 1K3JA 3I0NA 2PIEA 1U0RA 4DY6A 2KKLA 2CSWA 2I2DA 3AFOA 5JEMA 1QU5A
chains in the Genus database with same CATH topology
1QWTA 2QV7A 3UOTA 3DITA 4EGXA 1WLNA 1YJMA 3UMZA 4V24A 5JEJA 1J4KA 4R9PA 2W3OA 4L02A 4WERA 2JQJA 3MDBA 1KHUA 4G2SA 1K3NA 5JEOA 4KU0D 1MZKA 1MJSA 2AFFA 1J4PA 2XXSA 1R21A 5JELA 3VZCA 5JEKA 3VPYA 1UHTA 3T5PA 3GQSA 1LGQA 3GMJA 5C4VA 2EH0A 1ZOQA 2LC1A 1K3QA 3FM8A 4H87A 4JIWD 3OUNA 4A0EA 3VZDA 1KHXA 4D9VA 4JIVD 1DD1A 1U7VB 5JERA 2JPEA 3I6UA 2P1RA 5A8IA 3UN0A 2KB3A 1J4OA 1G3GA 3A77A 3ELVA 5DJOA 2KFUA 2A0TA 1FHQA 2FF4A 3UNNA 3DSHA 1U7FB 4WRRA 2KB4A 1U7FA 3S40A 3VZBA 1LGPA 2XT9B 4JONA 3HX1A 3PO8A 1UJXA 3I0MA 1G6GA 1U7VA 2JQIA 2QVLA 1YJ5C 4A4YA 3HUFA 3VA4A 1J4QA 3ELSA 1MR1A 2JGRA 3HUEA 2G1LA 3KT9A 2BRFA 1J2FA 1GXCA 5BVIA 1DEVA 2BONA 3I6WA 4EJQA 5E50A 1J4LA 1YGSA 1WV3A 3VA1A 1MK2A 1K2MA 3POAA 2JKDA 2JQLA 1FHRA 4QCJA 1G88A 1K2NA 3UV0A 3UNMA 1DMZA 2FEZA 1K3JA 3I0NA 2PIEA 2KKLA 2CSWA 5JEMA 1QU5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4KU0 D;  4JIV D;  4JIW D; 
#chains in the Genus database with same CATH topology
 5DHT A;  1QWT A;  2QV7 A;  3UOT A;  3V8R A;  3DIT A;  3V8P A;  4EGX A;  1WLN A;  1Y3H A;  1YJM A;  3UMZ A;  4V24 A;  2I2C A;  2I29 A;  5JEJ A;  2Q5F A;  1J4K A;  4R9P A;  2W3O A;  5DHS A;  4L02 A;  4WER A;  2JQJ A;  3MDB A;  1KHU A;  4G2S A;  1YT5 A;  1K3N A;  5JEO A;  4KU0 D;  1MZK A;  1MJS A;  3V7U A;  1Z0U A;  2AFF A;  1J4P A;  2XXS A;  1R21 A;  5JEL A;  3VZC A;  5JEK A;  5EJH A;  3VPY A;  1UHT A;  3T5P A;  5DHR A;  5EJF A;  3GQS A;  1LGQ A;  3GMJ A;  5DHQ A;  2EH0 A;  3V8Q A;  3V8N A;  5C4V A;  1ZOQ A;  2I2B A;  2LC1 A;  1K3Q A;  3FM8 A;  4H87 A;  4JIW D;  3PFN A;  3OUN A;  4A0E A;  3VZD A;  1KHX A;  4D9V A;  4JIV D;  1DD1 A;  1U7V B;  5JER A;  2JPE A;  1SUW A;  5DHP A;  3V80 A;  3I6U A;  2P1R A;  5A8I A;  3UN0 A;  2I2A A;  2KB3 A;  1J4O A;  1G3G A;  3A77 A;  3ELV A;  5DJO A;  1Y3I A;  3V7Y A;  1Z0S A;  2KFU A;  2A0T A;  1FHQ A;  2FF4 A;  3UNN A;  3DSH A;  1U7F B;  4WRR A;  2KB4 A;  1U7F A;  3S40 A;  3VZB A;  1LGP A;  2XT9 B;  2I1W A;  4JON A;  3HX1 A;  3PO8 A;  1UJX A;  3I0M A;  1G6G A;  1U7V A;  2JQI A;  2QVL A;  1YJ5 C;  1Z0Z A;  4A4Y A;  3HUF A;  3VA4 A;  1J4Q A;  5EJG A;  4HAO A;  3ELS A;  1MR1 A;  2JGR A;  5EJI A;  3HUE A;  2G1L A;  3KT9 A;  2BRF A;  1J2F A;  1GXC A;  5BVI A;  1DEV A;  2BON A;  3I6W A;  4EJQ A;  5E50 A;  3V7W A;  5DHU A;  1J4L A;  1YGS A;  1WV3 A;  3VA1 A;  1MK2 A;  1K2M A;  2AN1 A;  3POA A;  2I2F A;  2JKD A;  2JQL A;  1FHR A;  4QCJ A;  1G88 A;  1U0T A;  3V8M A;  1K2N A;  3UV0 A;  3UNM A;  1DMZ A;  2FEZ A;  1K3J A;  3I0N A;  2PIE A;  1U0R A;  4DY6 A;  2KKL A;  2CSW A;  2I2D A;  3AFO A;  5JEM A;  1QU5 A; 
#chains in the Genus database with same CATH homology
 1QWT A;  2QV7 A;  3UOT A;  3DIT A;  4EGX A;  1WLN A;  1YJM A;  3UMZ A;  4V24 A;  5JEJ A;  1J4K A;  4R9P A;  2W3O A;  4L02 A;  4WER A;  2JQJ A;  3MDB A;  1KHU A;  4G2S A;  1K3N A;  5JEO A;  4KU0 D;  1MZK A;  1MJS A;  2AFF A;  1J4P A;  2XXS A;  1R21 A;  5JEL A;  3VZC A;  5JEK A;  3VPY A;  1UHT A;  3T5P A;  3GQS A;  1LGQ A;  3GMJ A;  5C4V A;  2EH0 A;  1ZOQ A;  2LC1 A;  1K3Q A;  3FM8 A;  4H87 A;  4JIW D;  3OUN A;  4A0E A;  3VZD A;  1KHX A;  4D9V A;  4JIV D;  1DD1 A;  1U7V B;  5JER A;  2JPE A;  3I6U A;  2P1R A;  5A8I A;  3UN0 A;  2KB3 A;  1J4O A;  1G3G A;  3A77 A;  3ELV A;  5DJO A;  2KFU A;  2A0T A;  1FHQ A;  2FF4 A;  3UNN A;  3DSH A;  1U7F B;  4WRR A;  2KB4 A;  1U7F A;  3S40 A;  3VZB A;  1LGP A;  2XT9 B;  4JON A;  3HX1 A;  3PO8 A;  1UJX A;  3I0M A;  1G6G A;  1U7V A;  2JQI A;  2QVL A;  1YJ5 C;  4A4Y A;  3HUF A;  3VA4 A;  1J4Q A;  3ELS A;  1MR1 A;  2JGR A;  3HUE A;  2G1L A;  3KT9 A;  2BRF A;  1J2F A;  1GXC A;  5BVI A;  1DEV A;  2BON A;  3I6W A;  4EJQ A;  5E50 A;  1J4L A;  1YGS A;  1WV3 A;  3VA1 A;  1MK2 A;  1K2M A;  3POA A;  2JKD A;  2JQL A;  1FHR A;  4QCJ A;  1G88 A;  1K2N A;  3UV0 A;  3UNM A;  1DMZ A;  2FEZ A;  1K3J A;  3I0N A;  2PIE A;  2KKL A;  2CSW A;  5JEM A;  1QU5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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