4JJQA

Crystal structure of usp7-ntd with an e2 enzyme
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
143
structure length
137
Chain Sequence
TSWRSEATFQFTVERFSRLSESVLSPPCFVRNLPWKIMVMPRFQKSVGFFLQCNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGVAW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Ubiquitin carboxyl-terminal hydrolase 7
publication title Ubiquitin-specific protease 7 is a regulator of ubiquitin-conjugating enzyme UbE2E1.
pubmed doi rcsb
source organism Homo sapiens
total genus 24
structure length 137
sequence length 143
ec nomenclature ec 3.4.19.12: Ubiquitinyl hydrolase 1.
pdb deposition date 2013-03-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00917 MATH MATH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.210.10 Mainly Beta Sandwich Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 4jjqA00
1D0AA 1FLKA 4M4EA 2FOJA 3HSVA 1CZYA 2GKWA 1LB6A 1YY6A 3HQLA 2A25A 1LB5A 4GWMA 3ZJBA 1CA4A 2FOPA 4GWNA 4O1VA 1K2FA 2FOOA 3HQIA 1D01A 4K8UA 4C9ZA 1CA9A 1F3VB 4I7CA 3HQMA 1ZMSA 2F1WA 3HQHA 4CA1A 5H9MA 1QSCA 1D00A 1CZZA 2F1YA 3IVBA 2AN6A 4YSIA 3MQRA 4GHUA 3IVVA 1LB4A 1KZZA 3IVQA 1YZEA 4I7BA 4Z8MA 3MQSC 4I7DA 1FLLA 5E1TA 1RF3A 4JJQA 2F1XA 2F1ZA 4KG9A 4X3GA 2XXNA 3HU6A 4GJHA 1L0AA 1D0JA 2CR2A
chains in the Genus database with same CATH superfamily
1D0AA 1FLKA 4M4EA 2FOJA 3HSVA 1CZYA 2GKWA 1LB6A 1YY6A 3HQLA 2A25A 1LB5A 4GWMA 3ZJBA 1CA4A 2FOPA 4GWNA 4O1VA 1K2FA 2FOOA 3HQIA 1D01A 4K8UA 4C9ZA 1CA9A 1F3VB 4I7CA 3HQMA 1ZMSA 2F1WA 3HQHA 4CA1A 5H9MA 1QSCA 1D00A 1CZZA 2F1YA 3IVBA 2AN6A 4YSIA 3MQRA 4GHUA 3IVVA 1LB4A 1KZZA 3IVQA 1YZEA 4I7BA 4Z8MA 3MQSC 4I7DA 1FLLA 5E1TA 1RF3A 4JJQA 2F1XA 2F1ZA 4KG9A 4X3GA 2XXNA 3HU6A 4GJHA 1L0AA 1D0JA 2CR2A
chains in the Genus database with same CATH topology
1D0AA 1FLKA 4M4EA 2FOJA 3HSVA 1CZYA 2GKWA 1LB6A 1YY6A 3HQLA 2A25A 1LB5A 4GWMA 3ZJBA 1CA4A 2FOPA 4GWNA 4O1VA 1K2FA 2FOOA 3HQIA 1D01A 4K8UA 4C9ZA 1CA9A 1F3VB 4I7CA 3HQMA 1ZMSA 2F1WA 3HQHA 4CA1A 5H9MA 1QSCA 1D00A 1CZZA 2F1YA 3IVBA 2AN6A 4YSIA 3MQRA 4GHUA 3IVVA 1LB4A 1KZZA 3IVQA 1YZEA 4I7BA 4Z8MA 3MQSC 4I7DA 1FLLA 5E1TA 1RF3A 4JJQA 2F1XA 2F1ZA 4KG9A 4X3GA 2XXNA 3HU6A 4GJHA 1L0AA 1D0JA 2CR2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1D0A A;  1FLK A;  4M4E A;  2FOJ A;  3HSV A;  1CZY A;  2GKW A;  1LB6 A;  1YY6 A;  3HQL A;  2A25 A;  1LB5 A;  4GWM A;  3ZJB A;  1CA4 A;  2FOP A;  4GWN A;  4O1V A;  1K2F A;  2FOO A;  3HQI A;  1D01 A;  4K8U A;  4C9Z A;  1CA9 A;  1F3V B;  4I7C A;  3HQM A;  1ZMS A;  2F1W A;  3HQH A;  4CA1 A;  5H9M A;  1QSC A;  1D00 A;  1CZZ A;  2F1Y A;  3IVB A;  2AN6 A;  4YSI A;  3MQR A;  4GHU A;  3IVV A;  1LB4 A;  1KZZ A;  3IVQ A;  1YZE A;  4I7B A;  4Z8M A;  3MQS C;  4I7D A;  1FLL A;  5E1T A;  1RF3 A;  4JJQ A;  2F1X A;  2F1Z A;  4KG9 A;  4X3G A;  2XXN A;  3HU6 A;  4GJH A;  1L0A A;  1D0J A;  2CR2 A; 
#chains in the Genus database with same CATH topology
 1D0A A;  1FLK A;  4M4E A;  2FOJ A;  3HSV A;  1CZY A;  2GKW A;  1LB6 A;  1YY6 A;  3HQL A;  2A25 A;  1LB5 A;  4GWM A;  3ZJB A;  1CA4 A;  2FOP A;  4GWN A;  4O1V A;  1K2F A;  2FOO A;  3HQI A;  1D01 A;  4K8U A;  4C9Z A;  1CA9 A;  1F3V B;  4I7C A;  3HQM A;  1ZMS A;  2F1W A;  3HQH A;  4CA1 A;  5H9M A;  1QSC A;  1D00 A;  1CZZ A;  2F1Y A;  3IVB A;  2AN6 A;  4YSI A;  3MQR A;  4GHU A;  3IVV A;  1LB4 A;  1KZZ A;  3IVQ A;  1YZE A;  4I7B A;  4Z8M A;  3MQS C;  4I7D A;  1FLL A;  5E1T A;  1RF3 A;  4JJQ A;  2F1X A;  2F1Z A;  4KG9 A;  4X3G A;  2XXN A;  3HU6 A;  4GJH A;  1L0A A;  1D0J A;  2CR2 A; 
#chains in the Genus database with same CATH homology
 1D0A A;  1FLK A;  4M4E A;  2FOJ A;  3HSV A;  1CZY A;  2GKW A;  1LB6 A;  1YY6 A;  3HQL A;  2A25 A;  1LB5 A;  4GWM A;  3ZJB A;  1CA4 A;  2FOP A;  4GWN A;  4O1V A;  1K2F A;  2FOO A;  3HQI A;  1D01 A;  4K8U A;  4C9Z A;  1CA9 A;  1F3V B;  4I7C A;  3HQM A;  1ZMS A;  2F1W A;  3HQH A;  4CA1 A;  5H9M A;  1QSC A;  1D00 A;  1CZZ A;  2F1Y A;  3IVB A;  2AN6 A;  4YSI A;  3MQR A;  4GHU A;  3IVV A;  1LB4 A;  1KZZ A;  3IVQ A;  1YZE A;  4I7B A;  4Z8M A;  3MQS C;  4I7D A;  1FLL A;  5E1T A;  1RF3 A;  4JJQ A;  2F1X A;  2F1Z A;  4KG9 A;  4X3G A;  2XXN A;  3HU6 A;  4GJH A;  1L0A A;  1D0J A;  2CR2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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