4JN5A

Crystal structures of the first condensation domain of the cda synthetase
Total Genus 141
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
141
sequence length
446
structure length
435
Chain Sequence
NSSVRHGLTSAQHEVWLAQQLDPRGAHYRTGSCLEIDGPLDHAVLSRALRLTVAGTETLCSRFLTDEEGRPYRAYCPPAPEGSAAVEDPDGVPYTPVLLRHIDLSGHEDPEGEAQRWMDRDRATPLPLDRPGLSSHALFTLGGGRHLYYLGVHHIVIDGTSMALFYERLAEVYRALRDGRAVPAAAFGDTDRMVAGEEAYRASARYERDRAYWTGLFTDGGRALAPTVRSLGLPPERTEVLGRAAEATGAHWARVVIAGVAAFLHRTTGARDVVVSVPVTGRYGANARITPGMVSNRLPLRLAVRPGESFARVVETVSEAMSGLLAHSRFRGEDLDRELGGAGVSGPTVNVMPYIRPVDFGGPVGLMRSISSGPTTDLNIVLTGTPESGLRVDFEGNPQVYGGQDLTVLQERFVRFLAELAADPAATVDEVALLT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords CDA peptide synthetase I
publication title Crystal Structures of the First Condensation Domain of CDA Synthetase Suggest Conformational Changes during the Synthetic Cycle of Nonribosomal Peptide Synthetases.
pubmed doi rcsb
source organism Streptomyces coelicolor
molecule tags Biosynthetic protein
total genus 141
structure length 435
sequence length 446
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-03-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 4jn5A01
3.30.559.30 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 4jn5A02
1EACA 3FOTA 5KJSA 3U9FA 1SCZA 1QCAA 1L5AA 3L60A 1DPBA 1EADA 2E1UA 1EAAA 2IHWA 3CLAA 4N72A 5T3EA 4HVMA 2II3A 1DPCA 5KJVA 1Q9JA 2RKVA 1CLAA 2CLAA 5DU9A 3B2SA 1XMCA 1XL8A 2RKTA 3U9BA 1CIAA 5KJUA 2BGHA 1PD5A 4G2MA 2E1VA 2VSQA 1EAEA 4KE4A 3B30A 5KJWA 1C4TA 3MAEA 1E2OA 1EAFA 1XL7A 4JN5A 3FP0A 2XHGA 1EABA 1XMDA 1DPDA 2ZBAA 1Q23A 2II5A 4G0BA 4CLAA 5KJTA 5FALA 5FANA 2JGPA 2II4A 4KECA 5DUAA 2XR7A 1NOCB 4JN3A 4G22A 2I9DA 2E1TA
chains in the Genus database with same CATH superfamily
1EACA 2DEBA 1L5AA 3L60A 4N72A 1CLAA 5DU9A 1XMCA 1T1UA 2BGHA 2RCUA 4G2MA 3MAEA 5KJTA 2JGPA 2XR7A 1T7NA 5KJSA 1QCAA 4EP9A 1DPBA 2E1UA 4HVMA 2H3UA 1NDBA 1Q9JA 3B2SA 2RKTA 1CIAA 5KJUA 2FY5A 1T7QA 2E1VA 1EAEA 1Q6XA 2FW3A 2FY3A 2XHGA 1XMDA 4CLAA 1NM8A 5DUAA 4G22A 2I9DA 2FY4A 3U9FA 2IHWA 3CLAA 5T3EA 1NDFA 2II3A 1DPCA 2RKVA 3U9BA 1XL8A 4EYWA 2H4TA 2FY2A 3B30A 5KJWA 1E2OA 1EAFA 3FP0A 1DPDA 4G0BA 1S5OA 2FYOA 2II4A 4KECA 2E1TA 3FOTA 1SCZA 1EADA 2H3PA 1EAAA 5KJVA 2H3WA 1T7OA 2CLAA 1PD5A 2VSQA 4KE4A 1C4TA 1XL7A 4JN5A 1EABA 2ZBAA 1NDIA 1Q23A 2II5A 4EPHA 5FALA 5FANA 1NOCB 4JN3A
chains in the Genus database with same CATH topology
1EACA 2DEBA 1L5AA 3L60A 4N72A 1CLAA 5DU9A 1XMCA 1T1UA 2BGHA 2RCUA 4G2MA 3MAEA 5KJTA 2JGPA 2XR7A 1T7NA 5KJSA 1QCAA 4EP9A 1DPBA 2E1UA 4HVMA 2H3UA 1NDBA 1Q9JA 3B2SA 2RKTA 1CIAA 5KJUA 2FY5A 1T7QA 2E1VA 1EAEA 1Q6XA 2FW3A 2FY3A 2XHGA 1XMDA 4CLAA 1NM8A 5DUAA 4G22A 2I9DA 2FY4A 3U9FA 2IHWA 3CLAA 5T3EA 1NDFA 2II3A 1DPCA 2RKVA 3U9BA 1XL8A 4EYWA 2H4TA 2FY2A 3B30A 5KJWA 1E2OA 1EAFA 3FP0A 1DPDA 4G0BA 1S5OA 2II4A 4KECA 2FYOA 2E1TA 3FOTA 1SCZA 1EADA 2H3PA 1EAAA 5KJVA 2H3WA 1T7OA 2CLAA 1PD5A 2VSQA 4KE4A 1C4TA 1XL7A 4JN5A 1EABA 2ZBAA 1NDIA 1Q23A 2II5A 4EPHA 5FALA 5FANA 1NOCB 4JN3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EAC A;  3FOT A;  5KJS A;  3U9F A;  1SCZ A;  1QCA A;  1L5A A;  3L60 A;  1DPB A;  1EAD A;  2E1U A;  1EAA A;  2IHW A;  3CLA A;  4N72 A;  5T3E A;  4HVM A;  2II3 A;  1DPC A;  5KJV A;  1Q9J A;  2RKV A;  1CLA A;  2CLA A;  5DU9 A;  3B2S A;  1XMC A;  1XL8 A;  2RKT A;  3U9B A;  1CIA A;  5KJU A;  2BGH A;  1PD5 A;  4G2M A;  2E1V A;  2VSQ A;  1EAE A;  4KE4 A;  3B30 A;  5KJW A;  1C4T A;  3MAE A;  1E2O A;  1EAF A;  1XL7 A;  4JN5 A;  3FP0 A;  2XHG A;  1EAB A;  1XMD A;  1DPD A;  2ZBA A;  1Q23 A;  2II5 A;  4G0B A;  4CLA A;  5KJT A;  5FAL A;  5FAN A;  2JGP A;  2II4 A;  4KEC A;  5DUA A;  2XR7 A;  1NOC B;  4JN3 A;  4G22 A;  2I9D A;  2E1T A; 
#chains in the Genus database with same CATH topology
 1EAC A;  2DEB A;  1L5A A;  3L60 A;  4N72 A;  1CLA A;  5DU9 A;  1XMC A;  1T1U A;  2BGH A;  2RCU A;  4G2M A;  3MAE A;  5KJT A;  2JGP A;  2XR7 A;  1T7N A;  5KJS A;  1QCA A;  4EP9 A;  1DPB A;  2E1U A;  4HVM A;  2H3U A;  1NDB A;  1Q9J A;  3B2S A;  2RKT A;  1CIA A;  5KJU A;  2FY5 A;  1T7Q A;  2E1V A;  1EAE A;  1Q6X A;  2FW3 A;  2FY3 A;  2XHG A;  1XMD A;  4CLA A;  1NM8 A;  5DUA A;  4G22 A;  2I9D A;  2FY4 A;  3U9F A;  2IHW A;  3CLA A;  5T3E A;  1NDF A;  2II3 A;  1DPC A;  2RKV A;  3U9B A;  1XL8 A;  4EYW A;  2H4T A;  2FY2 A;  3B30 A;  5KJW A;  1E2O A;  1EAF A;  3FP0 A;  1DPD A;  4G0B A;  1S5O A;  2FYO A;  2II4 A;  4KEC A;  2E1T A;  3FOT A;  1SCZ A;  1EAD A;  2H3P A;  1EAA A;  5KJV A;  2H3W A;  1T7O A;  2CLA A;  1PD5 A;  2VSQ A;  4KE4 A;  1C4T A;  1XL7 A;  4JN5 A;  1EAB A;  2ZBA A;  1NDI A;  1Q23 A;  2II5 A;  4EPH A;  5FAL A;  5FAN A;  1NOC B;  4JN3 A; 
#chains in the Genus database with same CATH homology
 1EAC A;  2DEB A;  1L5A A;  3L60 A;  4N72 A;  1CLA A;  5DU9 A;  1XMC A;  1T1U A;  2BGH A;  2RCU A;  4G2M A;  3MAE A;  5KJT A;  2JGP A;  2XR7 A;  1T7N A;  5KJS A;  1QCA A;  4EP9 A;  1DPB A;  2E1U A;  4HVM A;  2H3U A;  1NDB A;  1Q9J A;  3B2S A;  2RKT A;  1CIA A;  5KJU A;  2FY5 A;  1T7Q A;  2E1V A;  1EAE A;  1Q6X A;  2FW3 A;  2FY3 A;  2XHG A;  1XMD A;  4CLA A;  1NM8 A;  5DUA A;  4G22 A;  2I9D A;  2FY4 A;  3U9F A;  2IHW A;  3CLA A;  5T3E A;  1NDF A;  2II3 A;  1DPC A;  2RKV A;  3U9B A;  1XL8 A;  4EYW A;  2H4T A;  2FY2 A;  3B30 A;  5KJW A;  1E2O A;  1EAF A;  3FP0 A;  1DPD A;  4G0B A;  1S5O A;  2II4 A;  4KEC A;  2FYO A;  2E1T A;  3FOT A;  1SCZ A;  1EAD A;  2H3P A;  1EAA A;  5KJV A;  2H3W A;  1T7O A;  2CLA A;  1PD5 A;  2VSQ A;  4KE4 A;  1C4T A;  1XL7 A;  4JN5 A;  1EAB A;  2ZBA A;  1NDI A;  1Q23 A;  2II5 A;  4EPH A;  5FAL A;  5FAN A;  1NOC B;  4JN3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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