4JONA

Crystal structure of a centrosomal protein 170kda, transcript variant beta (cep170) from homo sapiens at 2.15 a resolution (psi community target, sundstrom)
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
122
structure length
122
Chain Sequence
MSLTSWFLVSSGGTRHRLPREMIFVGRDDCELMLQSRSVDKQHAVINYDASTDEHLVKDLGSLNGTFVNDVRIPEQTYITLKLEDKLRFGYDTNLFTVVQGEMRVPEEALKHEKFTIQLQLS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords Centrosomal protein of 170 kDa
publication title Crystal structure of a centrosomal protein 170kDa, transcript variant beta (CEP170) from Homo sapiens at 2.15 A resolution (PSI Community Target, Sundstrom)
rcsb
source organism Homo sapiens
total genus 30
structure length 122
sequence length 122
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2013-03-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00498 FHA FHA domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.200.20 Mainly Beta Sandwich Tumour Suppressor Smad4 Tumour Suppressor Smad4 4jonA00
1FHRA 3I6UA 3ELVA 5A8IA 3GQSA 2W3OA 1J4OA 1G6GA 3UNMA 3UN0A 2EH0A 1R21A 1K2MA 1DMZA 2G1LA 2KFUA 3HUFA 3OUNA 2KKLA 2LC1A 3FM8A 3UMZA 1WV3A 1UJXA 1K3JA 3ELSA 1QU5A 4G2SA 2XT9B 1LGQA 1J4KA 3UNNA 1K2NA 3VA4A 1WLNA 3I0MA 3KT9A 1LGPA 2FF4A 3VPYA 1GXCA 3HX1A 3UOTA 2A0TA 4H87A 4A0EA 2BRFA 2CSWA 5DJOA 1K3QA 1YJMA 3VA1A 2JQJA 2JQLA 4EGXA 4D9VA 1YJ5C 1J4LA 1G3GA 2JQIA 3I6WA 1J4PA 1FHQA 2JPEA 2AFFA 2KB3A 2PIEA 2FEZA 3HUEA 5E50A 3MDBA 1J4QA 2JKDA 2KB4A 1MZKA 4JONA 3I0NA 3UV0A 3POAA 4QCJA 4EJQA 1UHTA 1K3NA 3PO8A
chains in the Genus database with same CATH superfamily
1YT5A 5DHPA 3V8PA 1DEVA 1FHRA 4DY6A 3I6UA 3ELVA 1MJSA 5A8IA 3GQSA 3V7UA 2P1RA 2W3OA 2I2DA 1J2FA 3V8MA 4A4YA 4WRRA 1J4OA 4JIWD 1G6GA 3UNMA 3UN0A 2EH0A 5DHRA 1R21A 1K2MA 1DMZA 2G1LA 2KFUA 3HUFA 3OUNA 2KKLA 2LC1A 3FM8A 3UMZA 1YGSA 1WV3A 1UJXA 1K3JA 5DHSA 2I2FA 3ELSA 1QU5A 3T5PA 4G2SA 1U7FA 1MR1A 2XT9B 1LGQA 2JGRA 1KHXA 1J4KA 3V8NA 3UNNA 1K2NA 3VA4A 1WLNA 5DHQA 4WERA 3S40A 1QWTA 3AFOA 3I0MA 5BVIA 2AN1A 2I2CA 3KT9A 1U0TA 5JEMA 1LGPA 2FF4A 3DSHA 4L02A 2BONA 1GXCA 3PFNA 2I2AA 3HX1A 3UOTA 3VPYA 2A0TA 4H87A 5JERA 4R9PA 3VZDA 2QVLA 1U7FB 4A0EA 5JELA 2BRFA 4KU0D 3DITA 5JEKA 2CSWA 2I29A 5DJOA 1K3QA 2I2BA 1Z0ZA 5JEJA 4HAOA 1SUWA 1YJMA 3VA1A 4V24A 1KHUA 2JQJA 1DD1A 2JQLA 4EGXA 1U7VA 3GMJA 4D9VA 1YJ5C 3V8QA 1J4LA 1G3GA 1Z0UA 2JQIA 3I6WA 2Q5FA 1J4PA 1FHQA 2JPEA 5EJGA 2AFFA 2KB3A 2PIEA 2FEZA 3HUEA 5EJHA 5EJFA 5DHTA 3VZBA 5E50A 1U0RA 3V80A 3V7YA 5EJIA 3MDBA 1Z0SA 1J4QA 2I1WA 1U7VB 2JKDA 4JIVD 5JEOA 1Y3HA 2KB4A 2XXSA 1MZKA 4JONA 3I0NA 3UV0A 5DHUA 3V7WA 5C4VA 3POAA 1MK2A 4QCJA 4EJQA 1UHTA 1Y3IA 3V8RA 3VZCA 3A77A 1ZOQA 2QV7A 1K3NA 1G88A 3PO8A
chains in the Genus database with same CATH topology
1DEVA 1FHRA 3I6UA 3ELVA 1MJSA 5A8IA 3GQSA 2P1RA 2W3OA 1J2FA 4A4YA 4WRRA 1J4OA 4JIWD 1G6GA 3UNMA 3UN0A 2EH0A 1R21A 1K2MA 1DMZA 2G1LA 2KFUA 3HUFA 3OUNA 2KKLA 2LC1A 3FM8A 3UMZA 1YGSA 1WV3A 1UJXA 1K3JA 3ELSA 1QU5A 3T5PA 4G2SA 1U7FA 1MR1A 2XT9B 1LGQA 2JGRA 1KHXA 1J4KA 3UNNA 1K2NA 3VA4A 1WLNA 4WERA 3S40A 1QWTA 5BVIA 3I0MA 3KT9A 5JEMA 1LGPA 2FF4A 3DSHA 4L02A 2BONA 1GXCA 3UOTA 3HX1A 3VPYA 2A0TA 4H87A 5JERA 4R9PA 3VZDA 2QVLA 1U7FB 4A0EA 5JELA 2BRFA 4KU0D 3DITA 5JEKA 2CSWA 5DJOA 1K3QA 5JEJA 1YJMA 3VA1A 4V24A 1KHUA 2JQJA 1DD1A 2JQLA 4EGXA 1U7VA 3GMJA 4D9VA 1YJ5C 1J4LA 1G3GA 2JQIA 3I6WA 1J4PA 1FHQA 2JPEA 2AFFA 2KB3A 2PIEA 2FEZA 3HUEA 3VZBA 5E50A 3MDBA 1J4QA 1U7VB 2JKDA 4JIVD 5JEOA 2KB4A 2XXSA 1MZKA 4JONA 3I0NA 3UV0A 5C4VA 3POAA 1MK2A 4QCJA 4EJQA 1UHTA 3VZCA 3A77A 1ZOQA 2QV7A 1K3NA 1G88A 3PO8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FHR A;  3I6U A;  3ELV A;  5A8I A;  3GQS A;  2W3O A;  1J4O A;  1G6G A;  3UNM A;  3UN0 A;  2EH0 A;  1R21 A;  1K2M A;  1DMZ A;  2G1L A;  2KFU A;  3HUF A;  3OUN A;  2KKL A;  2LC1 A;  3FM8 A;  3UMZ A;  1WV3 A;  1UJX A;  1K3J A;  3ELS A;  1QU5 A;  4G2S A;  2XT9 B;  1LGQ A;  1J4K A;  3UNN A;  1K2N A;  3VA4 A;  1WLN A;  3I0M A;  3KT9 A;  1LGP A;  2FF4 A;  3VPY A;  1GXC A;  3HX1 A;  3UOT A;  2A0T A;  4H87 A;  4A0E A;  2BRF A;  2CSW A;  5DJO A;  1K3Q A;  1YJM A;  3VA1 A;  2JQJ A;  2JQL A;  4EGX A;  4D9V A;  1YJ5 C;  1J4L A;  1G3G A;  2JQI A;  3I6W A;  1J4P A;  1FHQ A;  2JPE A;  2AFF A;  2KB3 A;  2PIE A;  2FEZ A;  3HUE A;  5E50 A;  3MDB A;  1J4Q A;  2JKD A;  2KB4 A;  1MZK A;  4JON A;  3I0N A;  3UV0 A;  3POA A;  4QCJ A;  4EJQ A;  1UHT A;  1K3N A;  3PO8 A; 
#chains in the Genus database with same CATH topology
 1YT5 A;  5DHP A;  3V8P A;  1DEV A;  1FHR A;  4DY6 A;  3I6U A;  3ELV A;  1MJS A;  5A8I A;  3GQS A;  3V7U A;  2P1R A;  2W3O A;  2I2D A;  1J2F A;  3V8M A;  4A4Y A;  4WRR A;  1J4O A;  4JIW D;  1G6G A;  3UNM A;  3UN0 A;  2EH0 A;  5DHR A;  1R21 A;  1K2M A;  1DMZ A;  2G1L A;  2KFU A;  3HUF A;  3OUN A;  2KKL A;  2LC1 A;  3FM8 A;  3UMZ A;  1YGS A;  1WV3 A;  1UJX A;  1K3J A;  5DHS A;  2I2F A;  3ELS A;  1QU5 A;  3T5P A;  4G2S A;  1U7F A;  1MR1 A;  2XT9 B;  1LGQ A;  2JGR A;  1KHX A;  1J4K A;  3V8N A;  3UNN A;  1K2N A;  3VA4 A;  1WLN A;  5DHQ A;  4WER A;  3S40 A;  1QWT A;  3AFO A;  3I0M A;  5BVI A;  2AN1 A;  2I2C A;  3KT9 A;  1U0T A;  5JEM A;  1LGP A;  2FF4 A;  3DSH A;  4L02 A;  2BON A;  1GXC A;  3PFN A;  2I2A A;  3HX1 A;  3UOT A;  3VPY A;  2A0T A;  4H87 A;  5JER A;  4R9P A;  3VZD A;  2QVL A;  1U7F B;  4A0E A;  5JEL A;  2BRF A;  4KU0 D;  3DIT A;  5JEK A;  2CSW A;  2I29 A;  5DJO A;  1K3Q A;  2I2B A;  1Z0Z A;  5JEJ A;  4HAO A;  1SUW A;  1YJM A;  3VA1 A;  4V24 A;  1KHU A;  2JQJ A;  1DD1 A;  2JQL A;  4EGX A;  1U7V A;  3GMJ A;  4D9V A;  1YJ5 C;  3V8Q A;  1J4L A;  1G3G A;  1Z0U A;  2JQI A;  3I6W A;  2Q5F A;  1J4P A;  1FHQ A;  2JPE A;  5EJG A;  2AFF A;  2KB3 A;  2PIE A;  2FEZ A;  3HUE A;  5EJH A;  5EJF A;  5DHT A;  3VZB A;  5E50 A;  1U0R A;  3V80 A;  3V7Y A;  5EJI A;  3MDB A;  1Z0S A;  1J4Q A;  2I1W A;  1U7V B;  2JKD A;  4JIV D;  5JEO A;  1Y3H A;  2KB4 A;  2XXS A;  1MZK A;  4JON A;  3I0N A;  3UV0 A;  5DHU A;  3V7W A;  5C4V A;  3POA A;  1MK2 A;  4QCJ A;  4EJQ A;  1UHT A;  1Y3I A;  3V8R A;  3VZC A;  3A77 A;  1ZOQ A;  2QV7 A;  1K3N A;  1G88 A;  3PO8 A; 
#chains in the Genus database with same CATH homology
 1DEV A;  1FHR A;  3I6U A;  3ELV A;  1MJS A;  5A8I A;  3GQS A;  2P1R A;  2W3O A;  1J2F A;  4A4Y A;  4WRR A;  1J4O A;  4JIW D;  1G6G A;  3UNM A;  3UN0 A;  2EH0 A;  1R21 A;  1K2M A;  1DMZ A;  2G1L A;  2KFU A;  3HUF A;  3OUN A;  2KKL A;  2LC1 A;  3FM8 A;  3UMZ A;  1YGS A;  1WV3 A;  1UJX A;  1K3J A;  3ELS A;  1QU5 A;  3T5P A;  4G2S A;  1U7F A;  1MR1 A;  2XT9 B;  1LGQ A;  2JGR A;  1KHX A;  1J4K A;  3UNN A;  1K2N A;  3VA4 A;  1WLN A;  4WER A;  3S40 A;  1QWT A;  5BVI A;  3I0M A;  3KT9 A;  5JEM A;  1LGP A;  2FF4 A;  3DSH A;  4L02 A;  2BON A;  1GXC A;  3UOT A;  3HX1 A;  3VPY A;  2A0T A;  4H87 A;  5JER A;  4R9P A;  3VZD A;  2QVL A;  1U7F B;  4A0E A;  5JEL A;  2BRF A;  4KU0 D;  3DIT A;  5JEK A;  2CSW A;  5DJO A;  1K3Q A;  5JEJ A;  1YJM A;  3VA1 A;  4V24 A;  1KHU A;  2JQJ A;  1DD1 A;  2JQL A;  4EGX A;  1U7V A;  3GMJ A;  4D9V A;  1YJ5 C;  1J4L A;  1G3G A;  2JQI A;  3I6W A;  1J4P A;  1FHQ A;  2JPE A;  2AFF A;  2KB3 A;  2PIE A;  2FEZ A;  3HUE A;  3VZB A;  5E50 A;  3MDB A;  1J4Q A;  1U7V B;  2JKD A;  4JIV D;  5JEO A;  2KB4 A;  2XXS A;  1MZK A;  4JON A;  3I0N A;  3UV0 A;  5C4V A;  3POA A;  1MK2 A;  4QCJ A;  4EJQ A;  1UHT A;  3VZC A;  3A77 A;  1ZOQ A;  2QV7 A;  1K3N A;  1G88 A;  3PO8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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