4JPDA

The structure of cyay from burkholderia cenocepacia
Total Genus 31
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
109
structure length
109
Chain Sequence
SMSDTEYLARAEAVLAAVERTVDVANDGDHDIDLERNGSVLTLTFENGSKIIVNLQPPMKEVWIAAKAGGFHYRFIDGEWRDTRTGTEFFSALTDYATQQAGLPITFSA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Metal binding protein
molecule keywords Protein CyaY
publication title The structure of CyaY from Burkholderia cenocepacia
rcsb
source organism Burkholderia cenocepacia
total genus 31
structure length 109
sequence length 109
ec nomenclature
pdb deposition date 2013-03-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01491 Frataxin_Cyay Frataxin-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.920.10 Alpha Beta 2-Layer Sandwich Metal Transport, Frataxin; Chain A Frataxin/CyaY 4jpdA00
4LP1A 2EFFA 1EW4A 2FQLA 3S5FA 2P1XA 2GA5A 3T3XA 1SOYA 3OERA 4JPDA 4EC2A 1LY7A 3S5EA 3OEQA 4LK8A 3T3TA 3S4MA 3T3KA 1EKGA 3S5DA 3T3JA 3T3LA 4HS5A
chains in the Genus database with same CATH superfamily
3SSCA 4HEA7 4LP1A 2EFFA 1EW4A 3IAM7 2FQLA 3S5FA 2FUG7 2P1XA 4C26A 3SSEA 2GA5A 3T3XA 1SOYA 3OERA 4JPDA 4EC2A 1LY7A 3S5EA 3GD0A 3OEQA 4LK8A 1V5RA 3T3TA 1D2MA 4P78C 3IAS7 3S4MA 1WHZA 3T3KA 3A5PA 3SSDA 1EKGA 3S5DA 3T3JA 3T3LA 4HS5A 3IMOA 3I9V7 3GD9A
chains in the Genus database with same CATH topology
4LP1A 2EFFA 1EW4A 2FQLA 3S5FA 2P1XA 2GA5A 3T3XA 1SOYA 3OERA 4JPDA 4EC2A 1LY7A 3S5EA 3OEQA 4LK8A 3T3TA 3S4MA 3T3KA 1EKGA 3S5DA 3T3JA 3T3LA 4HS5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4LP1 A;  2EFF A;  1EW4 A;  2FQL A;  3S5F A;  2P1X A;  2GA5 A;  3T3X A;  1SOY A;  3OER A;  4JPD A;  4EC2 A;  1LY7 A;  3S5E A;  3OEQ A;  4LK8 A;  3T3T A;  3S4M A;  3T3K A;  1EKG A;  3S5D A;  3T3J A;  3T3L A;  4HS5 A; 
#chains in the Genus database with same CATH topology
 3SSC A;  4HEA 7;  4LP1 A;  2EFF A;  1EW4 A;  3IAM 7;  2FQL A;  3S5F A;  2FUG 7;  2P1X A;  4C26 A;  3SSE A;  2GA5 A;  3T3X A;  1SOY A;  3OER A;  4JPD A;  4EC2 A;  1LY7 A;  3S5E A;  3GD0 A;  3OEQ A;  4LK8 A;  1V5R A;  3T3T A;  1D2M A;  4P78 C;  3IAS 7;  3S4M A;  1WHZ A;  3T3K A;  3A5P A;  3SSD A;  1EKG A;  3S5D A;  3T3J A;  3T3L A;  4HS5 A;  3IMO A;  3I9V 7;  3GD9 A; 
#chains in the Genus database with same CATH homology
 4LP1 A;  2EFF A;  1EW4 A;  2FQL A;  3S5F A;  2P1X A;  2GA5 A;  3T3X A;  1SOY A;  3OER A;  4JPD A;  4EC2 A;  1LY7 A;  3S5E A;  3OEQ A;  4LK8 A;  3T3T A;  3S4M A;  3T3K A;  1EKG A;  3S5D A;  3T3J A;  3T3L A;  4HS5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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