4JUPA

Dimeric structure of carma1 card
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
87
structure length
80
Chain Sequence
LWDNVECNRHMLSRYINPAKLTPYLRQCKVIDEQDEDEVLNANRAGRLLDILHTKGQRGYVVFLESLEFYYPELYKLVTG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords Caspase recruitment domain-containing protein 11
publication title Novel Disulfide Bond-Mediated Dimerization of the CARD Domain Was Revealed by the Crystal Structure of CARMA1 CARD
pubmed doi rcsb
source organism Homo sapiens
total genus 25
structure length 80
sequence length 87
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-03-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00619 CARD Caspase recruitment domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 4jupA00
2DBGA 2NZ7A 1UCPA 2MS8A 2OF5H 4ZBWA 2F1SA 3CL3A 4JQWA 3YGSP 3CRDA 1DDFA 2LS7A 2YU0A 1WH4A 2GF5A 1WXPA 4M9ZA 1E41A 2L6AA 4O9FA 1A1ZA 4UZ0A 2N7ZA 2HM2Q 2DO9A 4F44A 3LQQA 1YGOA 1NGRA 1D2ZB 2L9MA 1FADA 2MN4A 3EZQA 2M5VA 2A5YB 2P1HA 4N1LA 4F42A 3J6JA 2N00A 1CY5A 1Z6TA 3LQRA 2MB9A 4JUPA 2B1WA 2MPCA 2N97A 3T6PA 2BBRA 2BBZA 1CWWA 4O6XA 2OF5A 2MS7A 2KM6A 2N1FA 4P4HI 2D96A 4EWIA 4IZ7B 4O7QA 4A2WA 4M9SA 4QOBA 4DWNA 1PN5A 4E9MA 2G7RA 3J63A 1E3YA 2N83A 3KATA 4N1KA 1C15A 4IZ5E 2YQFA 2DBFA 3EZQB 1WMGA 4LWDA 2LWDA 3YGSC 1ICHA 2IB1A 4I16A 1DGNA 2DBDA 2O71A 4O9LA 2LWEA 4FH0A 4NQKA 2VGQA 2A9IA 2NSNA 2DBHA 4M9XA 3QF2A 3MOPA 4RHWE 2YGSA 4A2QA 2YVIA 1D2ZA 4IZAB 4D8OA 2N80A 2NAQA 1A1WA 3MOPG 2KN6A 3MOPK 1N3KA 4RHWA 4N1JA 4P4HA
chains in the Genus database with same CATH superfamily
2DBGA 2NZ7A 1UCPA 2MS8A 2OF5H 4ZBWA 2F1SA 3CL3A 4JQWA 3YGSP 2XV9A 3CRDA 1DDFA 2LS7A 2YU0A 1WH4A 2GF5A 1WXPA 4M9ZA 1E41A 2L6AA 4O9FA 1A1ZA 4UZ0A 2N7ZA 2HM2Q 2DO9A 4F44A 3LQQA 1YGOA 1NGRA 1D2ZB 2L9MA 1FADA 2MN4A 3EZQA 2M5VA 2A5YB 2P1HA 4N1LA 4F42A 3J6JA 2N00A 1CY5A 1Z6TA 3LQRA 2MB9A 4JUPA 2B1WA 2MPCA 2N97A 3T6PA 2BBRA 2BBZA 1CWWA 4O6XA 2OF5A 2MS7A 2KM6A 2N1FA 4P4HI 2D96A 4EWIA 4IZ7B 4O7QA 4A2WA 4M9SA 4QOBA 4DWNA 1PN5A 4E9MA 2G7RA 3J63A 1E3YA 2N83A 3KATA 4N1KA 1C15A 4IZ5E 2YQFA 2DBFA 3EZQB 1WMGA 4LWDA 2LWDA 3YGSC 1ICHA 2IB1A 4I16A 1DGNA 2DBDA 2O71A 4O9LA 2LWEA 4FH0A 4NQKA 2VGQA 2A9IA 2NSNA 2DBHA 4M9XA 3QF2A 2MJMA 3MOPA 4RHWE 2YGSA 4A2QA 2YVIA 1D2ZA 4IZAB 4D8OA 2N80A 2NAQA 1A1WA 3MOPG 2KN6A 3MOPK 1N3KA 4RHWA 4N1JA 4P4HA
chains in the Genus database with same CATH topology
2DBGA 2NZ7A 1UCPA 2MS8A 2OF5H 4ZBWA 2F1SA 3CL3A 4JQWA 3YGSP 2XV9A 3CRDA 1DDFA 2LS7A 2YU0A 1WH4A 2GF5A 1WXPA 4M9ZA 1E41A 2L6AA 4O9FA 1A1ZA 4UZ0A 2N7ZA 2HM2Q 2DO9A 4F44A 3LQQA 1YGOA 1NGRA 1D2ZB 2L9MA 1FADA 2MN4A 3EZQA 2M5VA 2A5YB 2P1HA 4N1LA 4F42A 3J6JA 2N00A 1CY5A 1Z6TA 3LQRA 2MB9A 4JUPA 2B1WA 2MPCA 2N97A 3T6PA 2BBRA 2BBZA 1CWWA 4O6XA 2OF5A 2MS7A 2KM6A 2N1FA 4P4HI 2D96A 4EWIA 4IZ7B 4O7QA 4A2WA 4M9SA 4QOBA 4DWNA 1PN5A 4E9MA 2G7RA 3J63A 1E3YA 2N83A 3KATA 4N1KA 1C15A 4IZ5E 2YQFA 2DBFA 3EZQB 1WMGA 4LWDA 2LWDA 3YGSC 1ICHA 2IB1A 4I16A 1DGNA 2DBDA 2O71A 4O9LA 2LWEA 4FH0A 4NQKA 2VGQA 2A9IA 2NSNA 2DBHA 4M9XA 3QF2A 2MJMA 3MOPA 4RHWE 2YGSA 4A2QA 2YVIA 1D2ZA 4IZAB 4D8OA 2N80A 2NAQA 1A1WA 3MOPG 2KN6A 3MOPK 1N3KA 4RHWA 4N1JA 4P4HA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DBG A;  2NZ7 A;  1UCP A;  2MS8 A;  2OF5 H;  4ZBW A;  2F1S A;  3CL3 A;  4JQW A;  3YGS P;  3CRD A;  1DDF A;  2LS7 A;  2YU0 A;  1WH4 A;  2GF5 A;  1WXP A;  4M9Z A;  1E41 A;  2L6A A;  4O9F A;  1A1Z A;  4UZ0 A;  2N7Z A;  2HM2 Q;  2DO9 A;  4F44 A;  3LQQ A;  1YGO A;  1NGR A;  1D2Z B;  2L9M A;  1FAD A;  2MN4 A;  3EZQ A;  2M5V A;  2A5Y B;  2P1H A;  4N1L A;  4F42 A;  3J6J A;  2N00 A;  1CY5 A;  1Z6T A;  3LQR A;  2MB9 A;  4JUP A;  2B1W A;  2MPC A;  2N97 A;  3T6P A;  2BBR A;  2BBZ A;  1CWW A;  4O6X A;  2OF5 A;  2MS7 A;  2KM6 A;  2N1F A;  4P4H I;  2D96 A;  4EWI A;  4IZ7 B;  4O7Q A;  4A2W A;  4M9S A;  4QOB A;  4DWN A;  1PN5 A;  4E9M A;  2G7R A;  3J63 A;  1E3Y A;  2N83 A;  3KAT A;  4N1K A;  1C15 A;  4IZ5 E;  2YQF A;  2DBF A;  3EZQ B;  1WMG A;  4LWD A;  2LWD A;  3YGS C;  1ICH A;  2IB1 A;  4I16 A;  1DGN A;  2DBD A;  2O71 A;  4O9L A;  2LWE A;  4FH0 A;  4NQK A;  2VGQ A;  2A9I A;  2NSN A;  2DBH A;  4M9X A;  3QF2 A;  3MOP A;  4RHW E;  2YGS A;  4A2Q A;  2YVI A;  1D2Z A;  4IZA B;  4D8O A;  2N80 A;  2NAQ A;  1A1W A;  3MOP G;  2KN6 A;  3MOP K;  1N3K A;  4RHW A;  4N1J A;  4P4H A; 
#chains in the Genus database with same CATH topology
 2DBG A;  2NZ7 A;  1UCP A;  2MS8 A;  2OF5 H;  4ZBW A;  2F1S A;  3CL3 A;  4JQW A;  3YGS P;  2XV9 A;  3CRD A;  1DDF A;  2LS7 A;  2YU0 A;  1WH4 A;  2GF5 A;  1WXP A;  4M9Z A;  1E41 A;  2L6A A;  4O9F A;  1A1Z A;  4UZ0 A;  2N7Z A;  2HM2 Q;  2DO9 A;  4F44 A;  3LQQ A;  1YGO A;  1NGR A;  1D2Z B;  2L9M A;  1FAD A;  2MN4 A;  3EZQ A;  2M5V A;  2A5Y B;  2P1H A;  4N1L A;  4F42 A;  3J6J A;  2N00 A;  1CY5 A;  1Z6T A;  3LQR A;  2MB9 A;  4JUP A;  2B1W A;  2MPC A;  2N97 A;  3T6P A;  2BBR A;  2BBZ A;  1CWW A;  4O6X A;  2OF5 A;  2MS7 A;  2KM6 A;  2N1F A;  4P4H I;  2D96 A;  4EWI A;  4IZ7 B;  4O7Q A;  4A2W A;  4M9S A;  4QOB A;  4DWN A;  1PN5 A;  4E9M A;  2G7R A;  3J63 A;  1E3Y A;  2N83 A;  3KAT A;  4N1K A;  1C15 A;  4IZ5 E;  2YQF A;  2DBF A;  3EZQ B;  1WMG A;  4LWD A;  2LWD A;  3YGS C;  1ICH A;  2IB1 A;  4I16 A;  1DGN A;  2DBD A;  2O71 A;  4O9L A;  2LWE A;  4FH0 A;  4NQK A;  2VGQ A;  2A9I A;  2NSN A;  2DBH A;  4M9X A;  3QF2 A;  2MJM A;  3MOP A;  4RHW E;  2YGS A;  4A2Q A;  2YVI A;  1D2Z A;  4IZA B;  4D8O A;  2N80 A;  2NAQ A;  1A1W A;  3MOP G;  2KN6 A;  3MOP K;  1N3K A;  4RHW A;  4N1J A;  4P4H A; 
#chains in the Genus database with same CATH homology
 2DBG A;  2NZ7 A;  1UCP A;  2MS8 A;  2OF5 H;  4ZBW A;  2F1S A;  3CL3 A;  4JQW A;  3YGS P;  2XV9 A;  3CRD A;  1DDF A;  2LS7 A;  2YU0 A;  1WH4 A;  2GF5 A;  1WXP A;  4M9Z A;  1E41 A;  2L6A A;  4O9F A;  1A1Z A;  4UZ0 A;  2N7Z A;  2HM2 Q;  2DO9 A;  4F44 A;  3LQQ A;  1YGO A;  1NGR A;  1D2Z B;  2L9M A;  1FAD A;  2MN4 A;  3EZQ A;  2M5V A;  2A5Y B;  2P1H A;  4N1L A;  4F42 A;  3J6J A;  2N00 A;  1CY5 A;  1Z6T A;  3LQR A;  2MB9 A;  4JUP A;  2B1W A;  2MPC A;  2N97 A;  3T6P A;  2BBR A;  2BBZ A;  1CWW A;  4O6X A;  2OF5 A;  2MS7 A;  2KM6 A;  2N1F A;  4P4H I;  2D96 A;  4EWI A;  4IZ7 B;  4O7Q A;  4A2W A;  4M9S A;  4QOB A;  4DWN A;  1PN5 A;  4E9M A;  2G7R A;  3J63 A;  1E3Y A;  2N83 A;  3KAT A;  4N1K A;  1C15 A;  4IZ5 E;  2YQF A;  2DBF A;  3EZQ B;  1WMG A;  4LWD A;  2LWD A;  3YGS C;  1ICH A;  2IB1 A;  4I16 A;  1DGN A;  2DBD A;  2O71 A;  4O9L A;  2LWE A;  4FH0 A;  4NQK A;  2VGQ A;  2A9I A;  2NSN A;  2DBH A;  4M9X A;  3QF2 A;  2MJM A;  3MOP A;  4RHW E;  2YGS A;  4A2Q A;  2YVI A;  1D2Z A;  4IZA B;  4D8O A;  2N80 A;  2NAQ A;  1A1W A;  3MOP G;  2KN6 A;  3MOP K;  1N3K A;  4RHW A;  4N1J A;  4P4H A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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