4JUQA

Pseudomonas aeruginosa metap t2n mutant, in mn form
Total Genus 79
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
258
structure length
258
Chain Sequence
b'NVTIKTPDDIEKMRIAGRLAAEVLEMIGEHIKPGVTTEELDRICHDYIVNEQKAIPAPLNYKGFPKSICTSINHVVCHGIPNEKPLKEGDILNVDITVIKDGYHGDTSKMFLVGKTPEWADRLCQITQECMYKGISVVRPGAHLGDIGEIIQKHAEKNGFSVVREYCGHGIGKVFHEEPQVLHYGRAGTGIELKEGMIFTIEPMINQGRPETRLLGDGWTAITKDRKLSAQWEHTVLVTADGYEILTLRNDETFPRTS'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Methionine excision captured by the structures of a methionine aminopeptidase
rcsb
molecule keywords Methionine aminopeptidase
source organism Pseudomonas aeruginosa
molecule tags Hydrolase
total genus 79
structure length 258
sequence length 258
chains with identical sequence B, C, D
ec nomenclature ec 3.4.11.18: Methionyl aminopeptidase.
pdb deposition date 2013-03-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 4juqA00
3BITA 1B59A 3BIQA 4IU6A 3IU8A 4ZWOA 4FLKA 2OKNA 2NQ6A 2BWTA 3BIPA 3FMQA 4OOKA 2DFIA 2B3HA 2Q8KA 5CIKA 1WBQA 2B3LA 1YVMA 4B28A 3RVAA 1WY2A 2BH3A 3MR1A 2V3XA 4IDYA 4S2RP 4RGZ1 1WLRA 1N51A 4ZNGA 1YJ3A 2GZ5A 1BOAA 2Q95A 5JI6A 4JUQA 2GU5A 1MATA 2ZSGA 4IECA 1W7VA 3D27A 5JFRA 2BWYA 4RZZA 2ADUA 1C22A 1WKMA 4IPAA 3FM3A 1YW7A 2EVOA 2V3ZA 2P9AA 1O0XA 2EVMA 2BWVA 2GG3A 4FLLA 4FO7A 3S6BA 4Z7MA 5CDVA 4U75A 5E5BA 3IG4A 1KQ0A 4HXXA 4U1BA 3RORA 3FMRA 1W2MA 2Q96A 4MATA 4EGEA 5FCHA 3PKAA 4IKUA 3PKEA 1C27A 5CNXA 3TB5A 2GA2A 3PKCA 3PKDA 2GG7A 5JHUA 2GU6A 4U6EA 4U73A 3IU7A 2BWXA 2GGCA 3IU9A 5CLSA 2Q92A 3MX6A 2BHAA 3Q6DA 3TAVA 1YW9A 2Q94A 2EA4A 4IKSA 4ZWPA 4KM3A 1WL9A 3L7GA 4RZYA 4R60A 4PV4A 1C23A 2EVCA 2GG9A 1XGOA 4IF7A 4U6WA 4FKCA 1KP0A 1C21A 2GU7A 1R58A 2V6CA 2HOWA 2BB7A 4FO8A 1R5HA 1C24A 2GG5A 1WL6A 3L24A 5CDEA 1M35A 2BWSA 4FLJA 5FCFA 1QXWA 4A6WA 4IKRA 2GTXA 2P98A 1QXZA 4U69A 1BN5A 2G6PA 1XGNA 2GG8A 2P99A 1WN1A 4QR8A 5CDLA 2MATA 3CTZA 1A16A 2V3YA 3CB6A 4U6ZA 2BWWA 1KQ9A 1Y1NA 3MATA 2BN7A 1QZYA 4S00A 4A6VA 1XGMA 4U76A 1PV9A 1QXYA 4S01A 2B3KA 1B6AA 1XNZA 4IKTA 4FUKA 1R5GA 2NQ7A 2GU4A 4ZWUA 4U6JA 4PNCA 1YW8A 2BWUA 1JAWA 2IW2A 5D6EA 1CHMA 4FLIA 2GGBA 3CB5A 4U70A 2GG0A 5D6FA 2BHBA 1XGSA 3PKBA 2Q93A 2BHCA 4U71A 4U6CA 2BHDA 4S2TP 5CE6A 2GG2A 2EA2A 2OAZA
chains in the Genus database with same CATH superfamily
3BITA 1B59A 3BIQA 4IU6A 3IU8A 4ZWOA 4FLKA 2OKNA 2NQ6A 2BWTA 3BIPA 3FMQA 4OOKA 2DFIA 2B3HA 2Q8KA 5CIKA 1WBQA 2B3LA 1YVMA 4B28A 3RVAA 1WY2A 2BH3A 3MR1A 2V3XA 4IDYA 4S2RP 4RGZ1 1WLRA 1N51A 4ZNGA 1YJ3A 2GZ5A 1BOAA 2Q95A 5JI6A 4JUQA 2GU5A 1MATA 2ZSGA 4IECA 1W7VA 3D27A 5JFRA 2BWYA 4RZZA 2ADUA 1C22A 1WKMA 4IPAA 3FM3A 1YW7A 2EVOA 2V3ZA 2P9AA 1O0XA 2EVMA 2BWVA 2GG3A 4FLLA 4FO7A 3S6BA 4Z7MA 5CDVA 4U75A 5E5BA 3IG4A 1KQ0A 4HXXA 4U1BA 3RORA 3FMRA 1W2MA 2Q96A 4MATA 4EGEA 5FCHA 3PKAA 4IKUA 3PKEA 1C27A 5CNXA 3TB5A 2GA2A 3PKCA 3PKDA 2GG7A 5JHUA 2GU6A 4U6EA 4U73A 3IU7A 2BWXA 2GGCA 3IU9A 5CLSA 2Q92A 3MX6A 2BHAA 3Q6DA 3TAVA 1YW9A 2Q94A 2EA4A 4IKSA 4ZWPA 4KM3A 1WL9A 3L7GA 4RZYA 4R60A 4PV4A 1C23A 2EVCA 2GG9A 1XGOA 4IF7A 4U6WA 4FKCA 1KP0A 1C21A 2GU7A 1R58A 2V6CA 2HOWA 2BB7A 4FO8A 1R5HA 1C24A 2GG5A 1WL6A 3L24A 5CDEA 1M35A 2BWSA 4FLJA 5FCFA 1QXWA 4A6WA 4IKRA 2GTXA 2P98A 1QXZA 4U69A 1BN5A 2G6PA 1XGNA 2GG8A 2P99A 1WN1A 4QR8A 5CDLA 2MATA 3CTZA 1A16A 2V3YA 3CB6A 4U6ZA 2BWWA 1KQ9A 1Y1NA 3MATA 2BN7A 1QZYA 4S00A 4A6VA 1XGMA 4U76A 1PV9A 1QXYA 4S01A 2B3KA 1B6AA 1XNZA 4IKTA 4FUKA 1R5GA 2NQ7A 2GU4A 4ZWUA 4U6JA 4PNCA 1YW8A 2BWUA 1JAWA 2IW2A 5D6EA 1CHMA 4FLIA 2GGBA 3CB5A 4U70A 2GG0A 5D6FA 2BHBA 1XGSA 3PKBA 2Q93A 2BHCA 4U71A 4U6CA 2BHDA 4S2TP 5CE6A 2GG2A 2EA2A 2OAZA
chains in the Genus database with same CATH topology
3BITA 1B59A 3BIQA 4IU6A 3IU8A 4ZWOA 4FLKA 2OKNA 2NQ6A 2BWTA 3BIPA 3FMQA 4OOKA 2DFIA 2B3HA 2Q8KA 5CIKA 1WBQA 2B3LA 1YVMA 4B28A 3RVAA 1WY2A 2BH3A 3MR1A 2V3XA 4IDYA 4S2RP 4RGZ1 1WLRA 1N51A 4ZNGA 1YJ3A 2GZ5A 1BOAA 2Q95A 5JI6A 4JUQA 2GU5A 1MATA 2ZSGA 4IECA 1W7VA 3D27A 5JFRA 2BWYA 4RZZA 2ADUA 1C22A 1WKMA 4IPAA 3FM3A 1YW7A 2EVOA 2V3ZA 2P9AA 1O0XA 2EVMA 2BWVA 2GG3A 4FLLA 4FO7A 3S6BA 4Z7MA 5CDVA 4U75A 5E5BA 3IG4A 1KQ0A 4HXXA 4U1BA 3RORA 3FMRA 1W2MA 2Q96A 4MATA 4EGEA 5FCHA 3PKAA 4IKUA 3PKEA 1C27A 5CNXA 3TB5A 2GA2A 3PKCA 3PKDA 2GG7A 5JHUA 2GU6A 4U6EA 4U73A 3IU7A 2BWXA 2GGCA 3IU9A 5CLSA 2Q92A 3MX6A 2BHAA 3Q6DA 3TAVA 1YW9A 2Q94A 2EA4A 4IKSA 4ZWPA 4KM3A 1WL9A 3L7GA 4RZYA 4R60A 4PV4A 1C23A 2EVCA 2GG9A 1XGOA 4IF7A 4U6WA 4FKCA 1KP0A 1C21A 2GU7A 1R58A 2V6CA 2HOWA 2BB7A 4FO8A 1R5HA 1C24A 2GG5A 1WL6A 3L24A 5CDEA 1M35A 2BWSA 4FLJA 5FCFA 1QXWA 4A6WA 4IKRA 2GTXA 2P98A 1QXZA 4U69A 1BN5A 2G6PA 1XGNA 2GG8A 2P99A 1WN1A 4QR8A 5CDLA 2MATA 3CTZA 1A16A 2V3YA 3CB6A 4U6ZA 2BWWA 1KQ9A 1Y1NA 3MATA 2BN7A 1QZYA 4S00A 4A6VA 1XGMA 4U76A 1PV9A 1QXYA 4S01A 2B3KA 1B6AA 1XNZA 4IKTA 4FUKA 1R5GA 2NQ7A 2GU4A 4ZWUA 4U6JA 4PNCA 1YW8A 2BWUA 1JAWA 2IW2A 5D6EA 1CHMA 4FLIA 2GGBA 3CB5A 4U70A 2GG0A 5D6FA 2BHBA 1XGSA 3PKBA 2Q93A 2BHCA 4U71A 4U6CA 2BHDA 4S2TP 5CE6A 2GG2A 2EA2A 2OAZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BIT A;  1B59 A;  3BIQ A;  4IU6 A;  3IU8 A;  4ZWO A;  4FLK A;  2OKN A;  2NQ6 A;  2BWT A;  3BIP A;  3FMQ A;  4OOK A;  2DFI A;  2B3H A;  2Q8K A;  5CIK A;  1WBQ A;  2B3L A;  1YVM A;  4B28 A;  3RVA A;  1WY2 A;  2BH3 A;  3MR1 A;  2V3X A;  4IDY A;  4S2R P;  4RGZ 1;  1WLR A;  1N51 A;  4ZNG A;  1YJ3 A;  2GZ5 A;  1BOA A;  2Q95 A;  5JI6 A;  4JUQ A;  2GU5 A;  1MAT A;  2ZSG A;  4IEC A;  1W7V A;  3D27 A;  5JFR A;  2BWY A;  4RZZ A;  2ADU A;  1C22 A;  1WKM A;  4IPA A;  3FM3 A;  1YW7 A;  2EVO A;  2V3Z A;  2P9A A;  1O0X A;  2EVM A;  2BWV A;  2GG3 A;  4FLL A;  4FO7 A;  3S6B A;  4Z7M A;  5CDV A;  4U75 A;  5E5B A;  3IG4 A;  1KQ0 A;  4HXX A;  4U1B A;  3ROR A;  3FMR A;  1W2M A;  2Q96 A;  4MAT A;  4EGE A;  5FCH A;  3PKA A;  4IKU A;  3PKE A;  1C27 A;  5CNX A;  3TB5 A;  2GA2 A;  3PKC A;  3PKD A;  2GG7 A;  5JHU A;  2GU6 A;  4U6E A;  4U73 A;  3IU7 A;  2BWX A;  2GGC A;  3IU9 A;  5CLS A;  2Q92 A;  3MX6 A;  2BHA A;  3Q6D A;  3TAV A;  1YW9 A;  2Q94 A;  2EA4 A;  4IKS A;  4ZWP A;  4KM3 A;  1WL9 A;  3L7G A;  4RZY A;  4R60 A;  4PV4 A;  1C23 A;  2EVC A;  2GG9 A;  1XGO A;  4IF7 A;  4U6W A;  4FKC A;  1KP0 A;  1C21 A;  2GU7 A;  1R58 A;  2V6C A;  2HOW A;  2BB7 A;  4FO8 A;  1R5H A;  1C24 A;  2GG5 A;  1WL6 A;  3L24 A;  5CDE A;  1M35 A;  2BWS A;  4FLJ A;  5FCF A;  1QXW A;  4A6W A;  4IKR A;  2GTX A;  2P98 A;  1QXZ A;  4U69 A;  1BN5 A;  2G6P A;  1XGN A;  2GG8 A;  2P99 A;  1WN1 A;  4QR8 A;  5CDL A;  2MAT A;  3CTZ A;  1A16 A;  2V3Y A;  3CB6 A;  4U6Z A;  2BWW A;  1KQ9 A;  1Y1N A;  3MAT A;  2BN7 A;  1QZY A;  4S00 A;  4A6V A;  1XGM A;  4U76 A;  1PV9 A;  1QXY A;  4S01 A;  2B3K A;  1B6A A;  1XNZ A;  4IKT A;  4FUK A;  1R5G A;  2NQ7 A;  2GU4 A;  4ZWU A;  4U6J A;  4PNC A;  1YW8 A;  2BWU A;  1JAW A;  2IW2 A;  5D6E A;  1CHM A;  4FLI A;  2GGB A;  3CB5 A;  4U70 A;  2GG0 A;  5D6F A;  2BHB A;  1XGS A;  3PKB A;  2Q93 A;  2BHC A;  4U71 A;  4U6C A;  2BHD A;  4S2T P;  5CE6 A;  2GG2 A;  2EA2 A;  2OAZ A; 
#chains in the Genus database with same CATH topology
 3BIT A;  1B59 A;  3BIQ A;  4IU6 A;  3IU8 A;  4ZWO A;  4FLK A;  2OKN A;  2NQ6 A;  2BWT A;  3BIP A;  3FMQ A;  4OOK A;  2DFI A;  2B3H A;  2Q8K A;  5CIK A;  1WBQ A;  2B3L A;  1YVM A;  4B28 A;  3RVA A;  1WY2 A;  2BH3 A;  3MR1 A;  2V3X A;  4IDY A;  4S2R P;  4RGZ 1;  1WLR A;  1N51 A;  4ZNG A;  1YJ3 A;  2GZ5 A;  1BOA A;  2Q95 A;  5JI6 A;  4JUQ A;  2GU5 A;  1MAT A;  2ZSG A;  4IEC A;  1W7V A;  3D27 A;  5JFR A;  2BWY A;  4RZZ A;  2ADU A;  1C22 A;  1WKM A;  4IPA A;  3FM3 A;  1YW7 A;  2EVO A;  2V3Z A;  2P9A A;  1O0X A;  2EVM A;  2BWV A;  2GG3 A;  4FLL A;  4FO7 A;  3S6B A;  4Z7M A;  5CDV A;  4U75 A;  5E5B A;  3IG4 A;  1KQ0 A;  4HXX A;  4U1B A;  3ROR A;  3FMR A;  1W2M A;  2Q96 A;  4MAT A;  4EGE A;  5FCH A;  3PKA A;  4IKU A;  3PKE A;  1C27 A;  5CNX A;  3TB5 A;  2GA2 A;  3PKC A;  3PKD A;  2GG7 A;  5JHU A;  2GU6 A;  4U6E A;  4U73 A;  3IU7 A;  2BWX A;  2GGC A;  3IU9 A;  5CLS A;  2Q92 A;  3MX6 A;  2BHA A;  3Q6D A;  3TAV A;  1YW9 A;  2Q94 A;  2EA4 A;  4IKS A;  4ZWP A;  4KM3 A;  1WL9 A;  3L7G A;  4RZY A;  4R60 A;  4PV4 A;  1C23 A;  2EVC A;  2GG9 A;  1XGO A;  4IF7 A;  4U6W A;  4FKC A;  1KP0 A;  1C21 A;  2GU7 A;  1R58 A;  2V6C A;  2HOW A;  2BB7 A;  4FO8 A;  1R5H A;  1C24 A;  2GG5 A;  1WL6 A;  3L24 A;  5CDE A;  1M35 A;  2BWS A;  4FLJ A;  5FCF A;  1QXW A;  4A6W A;  4IKR A;  2GTX A;  2P98 A;  1QXZ A;  4U69 A;  1BN5 A;  2G6P A;  1XGN A;  2GG8 A;  2P99 A;  1WN1 A;  4QR8 A;  5CDL A;  2MAT A;  3CTZ A;  1A16 A;  2V3Y A;  3CB6 A;  4U6Z A;  2BWW A;  1KQ9 A;  1Y1N A;  3MAT A;  2BN7 A;  1QZY A;  4S00 A;  4A6V A;  1XGM A;  4U76 A;  1PV9 A;  1QXY A;  4S01 A;  2B3K A;  1B6A A;  1XNZ A;  4IKT A;  4FUK A;  1R5G A;  2NQ7 A;  2GU4 A;  4ZWU A;  4U6J A;  4PNC A;  1YW8 A;  2BWU A;  1JAW A;  2IW2 A;  5D6E A;  1CHM A;  4FLI A;  2GGB A;  3CB5 A;  4U70 A;  2GG0 A;  5D6F A;  2BHB A;  1XGS A;  3PKB A;  2Q93 A;  2BHC A;  4U71 A;  4U6C A;  2BHD A;  4S2T P;  5CE6 A;  2GG2 A;  2EA2 A;  2OAZ A; 
#chains in the Genus database with same CATH homology
 3BIT A;  1B59 A;  3BIQ A;  4IU6 A;  3IU8 A;  4ZWO A;  4FLK A;  2OKN A;  2NQ6 A;  2BWT A;  3BIP A;  3FMQ A;  4OOK A;  2DFI A;  2B3H A;  2Q8K A;  5CIK A;  1WBQ A;  2B3L A;  1YVM A;  4B28 A;  3RVA A;  1WY2 A;  2BH3 A;  3MR1 A;  2V3X A;  4IDY A;  4S2R P;  4RGZ 1;  1WLR A;  1N51 A;  4ZNG A;  1YJ3 A;  2GZ5 A;  1BOA A;  2Q95 A;  5JI6 A;  4JUQ A;  2GU5 A;  1MAT A;  2ZSG A;  4IEC A;  1W7V A;  3D27 A;  5JFR A;  2BWY A;  4RZZ A;  2ADU A;  1C22 A;  1WKM A;  4IPA A;  3FM3 A;  1YW7 A;  2EVO A;  2V3Z A;  2P9A A;  1O0X A;  2EVM A;  2BWV A;  2GG3 A;  4FLL A;  4FO7 A;  3S6B A;  4Z7M A;  5CDV A;  4U75 A;  5E5B A;  3IG4 A;  1KQ0 A;  4HXX A;  4U1B A;  3ROR A;  3FMR A;  1W2M A;  2Q96 A;  4MAT A;  4EGE A;  5FCH A;  3PKA A;  4IKU A;  3PKE A;  1C27 A;  5CNX A;  3TB5 A;  2GA2 A;  3PKC A;  3PKD A;  2GG7 A;  5JHU A;  2GU6 A;  4U6E A;  4U73 A;  3IU7 A;  2BWX A;  2GGC A;  3IU9 A;  5CLS A;  2Q92 A;  3MX6 A;  2BHA A;  3Q6D A;  3TAV A;  1YW9 A;  2Q94 A;  2EA4 A;  4IKS A;  4ZWP A;  4KM3 A;  1WL9 A;  3L7G A;  4RZY A;  4R60 A;  4PV4 A;  1C23 A;  2EVC A;  2GG9 A;  1XGO A;  4IF7 A;  4U6W A;  4FKC A;  1KP0 A;  1C21 A;  2GU7 A;  1R58 A;  2V6C A;  2HOW A;  2BB7 A;  4FO8 A;  1R5H A;  1C24 A;  2GG5 A;  1WL6 A;  3L24 A;  5CDE A;  1M35 A;  2BWS A;  4FLJ A;  5FCF A;  1QXW A;  4A6W A;  4IKR A;  2GTX A;  2P98 A;  1QXZ A;  4U69 A;  1BN5 A;  2G6P A;  1XGN A;  2GG8 A;  2P99 A;  1WN1 A;  4QR8 A;  5CDL A;  2MAT A;  3CTZ A;  1A16 A;  2V3Y A;  3CB6 A;  4U6Z A;  2BWW A;  1KQ9 A;  1Y1N A;  3MAT A;  2BN7 A;  1QZY A;  4S00 A;  4A6V A;  1XGM A;  4U76 A;  1PV9 A;  1QXY A;  4S01 A;  2B3K A;  1B6A A;  1XNZ A;  4IKT A;  4FUK A;  1R5G A;  2NQ7 A;  2GU4 A;  4ZWU A;  4U6J A;  4PNC A;  1YW8 A;  2BWU A;  1JAW A;  2IW2 A;  5D6E A;  1CHM A;  4FLI A;  2GGB A;  3CB5 A;  4U70 A;  2GG0 A;  5D6F A;  2BHB A;  1XGS A;  3PKB A;  2Q93 A;  2BHC A;  4U71 A;  4U6C A;  2BHD A;  4S2T P;  5CE6 A;  2GG2 A;  2EA2 A;  2OAZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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