4JUQA

Pseudomonas aeruginosa metap t2n mutant, in mn form
Total Genus 79
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
258
structure length
258
Chain Sequence
NVTIKTPDDIEKMRIAGRLAAEVLEMIGEHIKPGVTTEELDRICHDYIVNEQKAIPAPLNYKGFPKSICTSINHVVCHGIPNEKPLKEGDILNVDITVIKDGYHGDTSKMFLVGKTPEWADRLCQITQECMYKGISVVRPGAHLGDIGEIIQKHAEKNGFSVVREYCGHGIGKVFHEEPQVLHYGRAGTGIELKEGMIFTIEPMINQGRPETRLLGDGWTAITKDRKLSAQWEHTVLVTADGYEILTLRNDETFPRTS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Pseudomonas aeruginosa
publication title Methionine excision captured by the structures of a methionine aminopeptidase
rcsb
molecule keywords Methionine aminopeptidase
total genus 79
structure length 258
sequence length 258
chains with identical sequence B, C, D
ec nomenclature ec 3.4.11.18: Methionyl aminopeptidase.
pdb deposition date 2013-03-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 4juqA00
1R58A 3BIQA 2BWWA 5FCHA 4QR8A 4FKCA 1R5GA 2BHAA 2V3XA 4U69A 4S00A 2GZ5A 4U75A 2EVMA 1KP0A 2EVOA 2BHBA 4IKRA 1Y1NA 1BN5A 3Q6DA 4FLKA 4U73A 4EGEA 3PKAA 2EVCA 2B3KA 2BHCA 1R5HA 2BWTA 5FCFA 2P99A 3FMRA 1B6AA 3PKDA 1A16A 2GU4A 4Z7MA 4R60A 4ZWUA 4U6ZA 1O0XA 2BHDA 3TAVA 2GU7A 3TB5A 2OAZA 4IPAA 2OKNA 4U6JA 2MATA 2GG2A 2GG0A 3IG4A 4U6CA 4ZNGA 2BN7A 4A6WA 5CIKA 1QXYA 2GGBA 3IU7A 4U70A 2GG5A 1XGMA 3CB5A 1YVMA 2IW2A 1XGNA 1YW7A 1QZYA 4ZWPA 3MR1A 5JI6A 3S6BA 4IKSA 1XNZA 4PNCA 3BIPA 5E5BA 1M35A 1WY2A 4IKUA 5CLSA 2ZSGA 2BWSA 3PKEA 1KQ0A 2Q8KA 2V3YA 3RVAA 2BWYA 3D27A 3FMQA 1WKMA 2NQ6A 1WL9A 1B59A 4FUKA 4B28A 4JUQA 5D6FA 2B3HA 3PKBA 2Q93A 4U71A 1W7VA 3PKCA 2DFIA 4IKTA 5CDLA 2BH3A 1QXWA 4FLJA 2GU5A 2GU6A 4IECA 4HXXA 2EA4A 1WBQA 3IU9A 1C22A 1W2MA 1WL6A 2BWVA 4FLIA 2V6CA 4PV4A 3RORA 1XGSA 2Q96A 2BWXA 1C23A 3CB6A 4IF7A 1C21A 2Q92A 2Q94A 4RZZA 5D6EA 2GTXA 5CDVA 3CTZA 1WLRA 2GG9A 1WN1A 1C24A 2HOWA 2BWUA 5CDEA 5JFRA 1QXZA 4KM3A 4A6VA 3MATA 2Q95A 4RZYA 2P98A 1C27A 2GGCA 5CE6A 1N51A 1PV9A 2V3ZA 3FM3A 1MATA 4FO8A 2BB7A 2B3LA 1YW8A 5JHUA 2ADUA 3BITA 1CHMA 4U1BA 4MATA 1YJ3A 4IDYA 4S01A 3L24A 4FO7A 4IU6A 4FLLA 1XGOA 2GA2A 4S2RP 2G6PA 4U6WA 3MX6A 4OOKA 1BOAA 2GG3A 2GG7A 1KQ9A 4ZWOA 1YW9A 4S2TP 3IU8A 3L7GA 5CNXA 2NQ7A 4U76A 2P9AA 1JAWA 4U6EA 2EA2A 4RGZ1 2GG8A
chains in the Genus database with same CATH superfamily
1R58A 3BIQA 2BWWA 5FCHA 4QR8A 4FKCA 1R5GA 2BHAA 2V3XA 4U69A 4S00A 2GZ5A 4U75A 2EVMA 1KP0A 2EVOA 2BHBA 4IKRA 1Y1NA 1BN5A 3Q6DA 4FLKA 4U73A 4EGEA 3PKAA 2EVCA 2B3KA 2BHCA 1R5HA 2BWTA 5FCFA 2P99A 3FMRA 1B6AA 3PKDA 1A16A 2GU4A 4Z7MA 4R60A 4ZWUA 4U6ZA 1O0XA 2BHDA 3TAVA 2GU7A 3TB5A 2OAZA 4IPAA 2OKNA 4U6JA 2MATA 2GG2A 2GG0A 3IG4A 4U6CA 4ZNGA 2BN7A 4A6WA 5CIKA 1QXYA 2GGBA 3IU7A 4U70A 2GG5A 1XGMA 3CB5A 1YVMA 2IW2A 1XGNA 1YW7A 1QZYA 4ZWPA 3MR1A 5JI6A 3S6BA 4IKSA 1XNZA 4PNCA 3BIPA 5E5BA 1M35A 1WY2A 4IKUA 5CLSA 2ZSGA 2BWSA 3PKEA 1KQ0A 2Q8KA 2V3YA 3RVAA 2BWYA 3D27A 3FMQA 1WKMA 2NQ6A 1WL9A 1B59A 4FUKA 4B28A 4JUQA 5D6FA 2B3HA 3PKBA 2Q93A 4U71A 1W7VA 3PKCA 2DFIA 4IKTA 5CDLA 2BH3A 1QXWA 4FLJA 2GU5A 2GU6A 4IECA 4HXXA 2EA4A 1WBQA 3IU9A 1C22A 1W2MA 1WL6A 2BWVA 4FLIA 2V6CA 4PV4A 3RORA 1XGSA 2Q96A 2BWXA 1C23A 3CB6A 4IF7A 1C21A 2Q92A 2Q94A 4RZZA 5D6EA 2GTXA 5CDVA 3CTZA 1WLRA 2GG9A 1WN1A 1C24A 2HOWA 2BWUA 5CDEA 5JFRA 1QXZA 4KM3A 4A6VA 3MATA 2Q95A 4RZYA 2P98A 1C27A 2GGCA 5CE6A 1N51A 1PV9A 2V3ZA 3FM3A 1MATA 4FO8A 2BB7A 2B3LA 1YW8A 5JHUA 2ADUA 3BITA 1CHMA 4U1BA 4MATA 1YJ3A 4IDYA 4S01A 3L24A 4FO7A 4IU6A 4FLLA 1XGOA 2GA2A 4S2RP 2G6PA 4U6WA 3MX6A 4OOKA 1BOAA 2GG3A 2GG7A 1KQ9A 4ZWOA 1YW9A 4S2TP 3IU8A 3L7GA 5CNXA 2NQ7A 4U76A 2P9AA 1JAWA 4U6EA 2EA2A 4RGZ1 2GG8A
chains in the Genus database with same CATH topology
1R58A 3BIQA 2BWWA 5FCHA 4QR8A 4FKCA 1R5GA 2BHAA 2V3XA 4U69A 4S00A 2GZ5A 4U75A 2EVMA 1KP0A 2EVOA 2BHBA 4IKRA 1Y1NA 1BN5A 3Q6DA 4FLKA 4U73A 4EGEA 3PKAA 2EVCA 2B3KA 2BHCA 1R5HA 2BWTA 5FCFA 2P99A 3FMRA 1B6AA 3PKDA 1A16A 2GU4A 4Z7MA 4R60A 4ZWUA 4U6ZA 1O0XA 2BHDA 3TAVA 2GU7A 3TB5A 2OAZA 4IPAA 2OKNA 4U6JA 2MATA 2GG2A 2GG0A 3IG4A 4U6CA 4ZNGA 2BN7A 4A6WA 5CIKA 1QXYA 2GGBA 3IU7A 4U70A 2GG5A 1XGMA 3CB5A 1YVMA 2IW2A 1XGNA 1YW7A 1QZYA 4ZWPA 3MR1A 5JI6A 3S6BA 4IKSA 1XNZA 4PNCA 3BIPA 5E5BA 1M35A 1WY2A 4IKUA 5CLSA 2ZSGA 2BWSA 3PKEA 1KQ0A 2Q8KA 2V3YA 3RVAA 2BWYA 3D27A 3FMQA 1WKMA 2NQ6A 1WL9A 1B59A 4FUKA 4B28A 4JUQA 5D6FA 2B3HA 3PKBA 2Q93A 4U71A 1W7VA 3PKCA 2DFIA 4IKTA 5CDLA 2BH3A 1QXWA 4FLJA 2GU5A 2GU6A 4IECA 4HXXA 2EA4A 1WBQA 3IU9A 1C22A 1W2MA 1WL6A 2BWVA 4FLIA 2V6CA 4PV4A 3RORA 1XGSA 2Q96A 2BWXA 1C23A 3CB6A 4IF7A 1C21A 2Q92A 2Q94A 4RZZA 5D6EA 2GTXA 5CDVA 3CTZA 1WLRA 2GG9A 1WN1A 1C24A 2HOWA 2BWUA 5CDEA 5JFRA 1QXZA 4KM3A 4A6VA 3MATA 2Q95A 4RZYA 2P98A 1C27A 2GGCA 5CE6A 1N51A 1PV9A 2V3ZA 3FM3A 1MATA 4FO8A 2BB7A 2B3LA 1YW8A 5JHUA 2ADUA 3BITA 1CHMA 4U1BA 4MATA 1YJ3A 4IDYA 4S01A 3L24A 4FO7A 4IU6A 4FLLA 1XGOA 2GA2A 4S2RP 2G6PA 4U6WA 3MX6A 4OOKA 1BOAA 2GG3A 2GG7A 1KQ9A 4ZWOA 1YW9A 4S2TP 3IU8A 3L7GA 5CNXA 2NQ7A 4U76A 2P9AA 1JAWA 4U6EA 2EA2A 4RGZ1 2GG8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1R58 A;  3BIQ A;  2BWW A;  5FCH A;  4QR8 A;  4FKC A;  1R5G A;  2BHA A;  2V3X A;  4U69 A;  4S00 A;  2GZ5 A;  4U75 A;  2EVM A;  1KP0 A;  2EVO A;  2BHB A;  4IKR A;  1Y1N A;  1BN5 A;  3Q6D A;  4FLK A;  4U73 A;  4EGE A;  3PKA A;  2EVC A;  2B3K A;  2BHC A;  1R5H A;  2BWT A;  5FCF A;  2P99 A;  3FMR A;  1B6A A;  3PKD A;  1A16 A;  2GU4 A;  4Z7M A;  4R60 A;  4ZWU A;  4U6Z A;  1O0X A;  2BHD A;  3TAV A;  2GU7 A;  3TB5 A;  2OAZ A;  4IPA A;  2OKN A;  4U6J A;  2MAT A;  2GG2 A;  2GG0 A;  3IG4 A;  4U6C A;  4ZNG A;  2BN7 A;  4A6W A;  5CIK A;  1QXY A;  2GGB A;  3IU7 A;  4U70 A;  2GG5 A;  1XGM A;  3CB5 A;  1YVM A;  2IW2 A;  1XGN A;  1YW7 A;  1QZY A;  4ZWP A;  3MR1 A;  5JI6 A;  3S6B A;  4IKS A;  1XNZ A;  4PNC A;  3BIP A;  5E5B A;  1M35 A;  1WY2 A;  4IKU A;  5CLS A;  2ZSG A;  2BWS A;  3PKE A;  1KQ0 A;  2Q8K A;  2V3Y A;  3RVA A;  2BWY A;  3D27 A;  3FMQ A;  1WKM A;  2NQ6 A;  1WL9 A;  1B59 A;  4FUK A;  4B28 A;  4JUQ A;  5D6F A;  2B3H A;  3PKB A;  2Q93 A;  4U71 A;  1W7V A;  3PKC A;  2DFI A;  4IKT A;  5CDL A;  2BH3 A;  1QXW A;  4FLJ A;  2GU5 A;  2GU6 A;  4IEC A;  4HXX A;  2EA4 A;  1WBQ A;  3IU9 A;  1C22 A;  1W2M A;  1WL6 A;  2BWV A;  4FLI A;  2V6C A;  4PV4 A;  3ROR A;  1XGS A;  2Q96 A;  2BWX A;  1C23 A;  3CB6 A;  4IF7 A;  1C21 A;  2Q92 A;  2Q94 A;  4RZZ A;  5D6E A;  2GTX A;  5CDV A;  3CTZ A;  1WLR A;  2GG9 A;  1WN1 A;  1C24 A;  2HOW A;  2BWU A;  5CDE A;  5JFR A;  1QXZ A;  4KM3 A;  4A6V A;  3MAT A;  2Q95 A;  4RZY A;  2P98 A;  1C27 A;  2GGC A;  5CE6 A;  1N51 A;  1PV9 A;  2V3Z A;  3FM3 A;  1MAT A;  4FO8 A;  2BB7 A;  2B3L A;  1YW8 A;  5JHU A;  2ADU A;  3BIT A;  1CHM A;  4U1B A;  4MAT A;  1YJ3 A;  4IDY A;  4S01 A;  3L24 A;  4FO7 A;  4IU6 A;  4FLL A;  1XGO A;  2GA2 A;  4S2R P;  2G6P A;  4U6W A;  3MX6 A;  4OOK A;  1BOA A;  2GG3 A;  2GG7 A;  1KQ9 A;  4ZWO A;  1YW9 A;  4S2T P;  3IU8 A;  3L7G A;  5CNX A;  2NQ7 A;  4U76 A;  2P9A A;  1JAW A;  4U6E A;  2EA2 A;  4RGZ 1;  2GG8 A; 
#chains in the Genus database with same CATH topology
 1R58 A;  3BIQ A;  2BWW A;  5FCH A;  4QR8 A;  4FKC A;  1R5G A;  2BHA A;  2V3X A;  4U69 A;  4S00 A;  2GZ5 A;  4U75 A;  2EVM A;  1KP0 A;  2EVO A;  2BHB A;  4IKR A;  1Y1N A;  1BN5 A;  3Q6D A;  4FLK A;  4U73 A;  4EGE A;  3PKA A;  2EVC A;  2B3K A;  2BHC A;  1R5H A;  2BWT A;  5FCF A;  2P99 A;  3FMR A;  1B6A A;  3PKD A;  1A16 A;  2GU4 A;  4Z7M A;  4R60 A;  4ZWU A;  4U6Z A;  1O0X A;  2BHD A;  3TAV A;  2GU7 A;  3TB5 A;  2OAZ A;  4IPA A;  2OKN A;  4U6J A;  2MAT A;  2GG2 A;  2GG0 A;  3IG4 A;  4U6C A;  4ZNG A;  2BN7 A;  4A6W A;  5CIK A;  1QXY A;  2GGB A;  3IU7 A;  4U70 A;  2GG5 A;  1XGM A;  3CB5 A;  1YVM A;  2IW2 A;  1XGN A;  1YW7 A;  1QZY A;  4ZWP A;  3MR1 A;  5JI6 A;  3S6B A;  4IKS A;  1XNZ A;  4PNC A;  3BIP A;  5E5B A;  1M35 A;  1WY2 A;  4IKU A;  5CLS A;  2ZSG A;  2BWS A;  3PKE A;  1KQ0 A;  2Q8K A;  2V3Y A;  3RVA A;  2BWY A;  3D27 A;  3FMQ A;  1WKM A;  2NQ6 A;  1WL9 A;  1B59 A;  4FUK A;  4B28 A;  4JUQ A;  5D6F A;  2B3H A;  3PKB A;  2Q93 A;  4U71 A;  1W7V A;  3PKC A;  2DFI A;  4IKT A;  5CDL A;  2BH3 A;  1QXW A;  4FLJ A;  2GU5 A;  2GU6 A;  4IEC A;  4HXX A;  2EA4 A;  1WBQ A;  3IU9 A;  1C22 A;  1W2M A;  1WL6 A;  2BWV A;  4FLI A;  2V6C A;  4PV4 A;  3ROR A;  1XGS A;  2Q96 A;  2BWX A;  1C23 A;  3CB6 A;  4IF7 A;  1C21 A;  2Q92 A;  2Q94 A;  4RZZ A;  5D6E A;  2GTX A;  5CDV A;  3CTZ A;  1WLR A;  2GG9 A;  1WN1 A;  1C24 A;  2HOW A;  2BWU A;  5CDE A;  5JFR A;  1QXZ A;  4KM3 A;  4A6V A;  3MAT A;  2Q95 A;  4RZY A;  2P98 A;  1C27 A;  2GGC A;  5CE6 A;  1N51 A;  1PV9 A;  2V3Z A;  3FM3 A;  1MAT A;  4FO8 A;  2BB7 A;  2B3L A;  1YW8 A;  5JHU A;  2ADU A;  3BIT A;  1CHM A;  4U1B A;  4MAT A;  1YJ3 A;  4IDY A;  4S01 A;  3L24 A;  4FO7 A;  4IU6 A;  4FLL A;  1XGO A;  2GA2 A;  4S2R P;  2G6P A;  4U6W A;  3MX6 A;  4OOK A;  1BOA A;  2GG3 A;  2GG7 A;  1KQ9 A;  4ZWO A;  1YW9 A;  4S2T P;  3IU8 A;  3L7G A;  5CNX A;  2NQ7 A;  4U76 A;  2P9A A;  1JAW A;  4U6E A;  2EA2 A;  4RGZ 1;  2GG8 A; 
#chains in the Genus database with same CATH homology
 1R58 A;  3BIQ A;  2BWW A;  5FCH A;  4QR8 A;  4FKC A;  1R5G A;  2BHA A;  2V3X A;  4U69 A;  4S00 A;  2GZ5 A;  4U75 A;  2EVM A;  1KP0 A;  2EVO A;  2BHB A;  4IKR A;  1Y1N A;  1BN5 A;  3Q6D A;  4FLK A;  4U73 A;  4EGE A;  3PKA A;  2EVC A;  2B3K A;  2BHC A;  1R5H A;  2BWT A;  5FCF A;  2P99 A;  3FMR A;  1B6A A;  3PKD A;  1A16 A;  2GU4 A;  4Z7M A;  4R60 A;  4ZWU A;  4U6Z A;  1O0X A;  2BHD A;  3TAV A;  2GU7 A;  3TB5 A;  2OAZ A;  4IPA A;  2OKN A;  4U6J A;  2MAT A;  2GG2 A;  2GG0 A;  3IG4 A;  4U6C A;  4ZNG A;  2BN7 A;  4A6W A;  5CIK A;  1QXY A;  2GGB A;  3IU7 A;  4U70 A;  2GG5 A;  1XGM A;  3CB5 A;  1YVM A;  2IW2 A;  1XGN A;  1YW7 A;  1QZY A;  4ZWP A;  3MR1 A;  5JI6 A;  3S6B A;  4IKS A;  1XNZ A;  4PNC A;  3BIP A;  5E5B A;  1M35 A;  1WY2 A;  4IKU A;  5CLS A;  2ZSG A;  2BWS A;  3PKE A;  1KQ0 A;  2Q8K A;  2V3Y A;  3RVA A;  2BWY A;  3D27 A;  3FMQ A;  1WKM A;  2NQ6 A;  1WL9 A;  1B59 A;  4FUK A;  4B28 A;  4JUQ A;  5D6F A;  2B3H A;  3PKB A;  2Q93 A;  4U71 A;  1W7V A;  3PKC A;  2DFI A;  4IKT A;  5CDL A;  2BH3 A;  1QXW A;  4FLJ A;  2GU5 A;  2GU6 A;  4IEC A;  4HXX A;  2EA4 A;  1WBQ A;  3IU9 A;  1C22 A;  1W2M A;  1WL6 A;  2BWV A;  4FLI A;  2V6C A;  4PV4 A;  3ROR A;  1XGS A;  2Q96 A;  2BWX A;  1C23 A;  3CB6 A;  4IF7 A;  1C21 A;  2Q92 A;  2Q94 A;  4RZZ A;  5D6E A;  2GTX A;  5CDV A;  3CTZ A;  1WLR A;  2GG9 A;  1WN1 A;  1C24 A;  2HOW A;  2BWU A;  5CDE A;  5JFR A;  1QXZ A;  4KM3 A;  4A6V A;  3MAT A;  2Q95 A;  4RZY A;  2P98 A;  1C27 A;  2GGC A;  5CE6 A;  1N51 A;  1PV9 A;  2V3Z A;  3FM3 A;  1MAT A;  4FO8 A;  2BB7 A;  2B3L A;  1YW8 A;  5JHU A;  2ADU A;  3BIT A;  1CHM A;  4U1B A;  4MAT A;  1YJ3 A;  4IDY A;  4S01 A;  3L24 A;  4FO7 A;  4IU6 A;  4FLL A;  1XGO A;  2GA2 A;  4S2R P;  2G6P A;  4U6W A;  3MX6 A;  4OOK A;  1BOA A;  2GG3 A;  2GG7 A;  1KQ9 A;  4ZWO A;  1YW9 A;  4S2T P;  3IU8 A;  3L7G A;  5CNX A;  2NQ7 A;  4U76 A;  2P9A A;  1JAW A;  4U6E A;  2EA2 A;  4RGZ 1;  2GG8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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