4JWDA

Crystal structure of the substrate binding domain of e.coli dnak in complex with bovine bac7(15-28)
Total Genus 60
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
60
sequence length
211
structure length
211
Chain Sequence
VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Chaperone/antibiotic
molecule keywords Chaperone protein DnaK
publication title Structural Identification of DnaK Binding Sites within Bovine and Sheep Bactenecin Bac7.
pubmed rcsb
source organism Escherichia coli
total genus 60
structure length 211
sequence length 211
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-03-27
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.10 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 4jwdA02
2.60.34.10 Mainly Beta Sandwich Substrate Binding Domain Of DNAk; Chain A, domain 1 Substrate Binding Domain Of DNAk; Chain A, domain 1 4jwdA01
3OHXM 4EZSA 4JWEA 1CKRA 4EZRA 4WV5A 4EZUA 4JN4A 4E81A 4F01A 4F00A 4PO2A 4EZWA 3H0XA 4R5KA 1U00A 4R5LA 3QNJA 1BPRA 3C7NB 3T49A 1Q5LA 7HSCA 3C7NA 4HYBA 1DKZA 5E84A 4R5JA 2KHOA 3D2FA 3T48A 4EZVA 3T47A 4EZZA 4JNEA 3D2EA 3DQGA 3DPOA 3N8EA 3L3OM 4R5IA 3T46A 3DOBA 2V7YA 4H6IA 4EZXA 4JWIA 4WV7A 2QFFA 3DPQA 4EZQA 4H6HA 2BPRA 4FL9A 2WINM 4R5GA 4B9QA 3T4AG 1DKYA 4JWCA 3DPPA 4EZNA 4EZPA 4EZOA 4EZYA 4HY9A 2QXLA 1YUWA 2OP6A 4EZTA 1DKXA 5TKYA 4JNFA 1DG4A 4JWDA
chains in the Genus database with same CATH superfamily
4F01A 1BPRA 4JL9A 4WPEA 2Z0VA 1OA0A 3CVRA 2X3XA 1W9MA 2F7RA 1GNTA 2KHOA 3QE6A 4IM0A 3L3OM 2QFFA 1X04A 3T4AG 1DKYA 4AZ5A 3G9GA 4JWEA 2YL8A 5FLEX 4F00A 1I49A 2OO2A 2F18A 2X3WA 4WV7A 4KIKB 3VKHA 2BPRA 3LLLA 3RV0A 1OAOA 3ACOA 2YKTA 1YUWA 5TKYA 4FZSA 4M0MA 4FM3A 1SU7A 3EJSA 3T49A 7HSCA 3C7NA 3DDFA 3B51X 1Q5LA 2Z0OA 3GI7A 4ATMA 4R5IA 1URUA 1UPXA 3CV5A 2PMRA 1R33A 3D4ZA 1R34A 1TQVA 2QKWA 2OW6A 2NCZA 4EZUA 4UDXX 2EFKA 3SBSA 5KBPA 3VEAA 3DX3A 4ILGA 2GF4A 3DOBA 4AZ6A 4AZIA 3BLBA 2F7PA 4EZQA 1TQSA 3CZSA 2ELBA 4EZPA 4EZOA 2YLAA 3O3NB 2O0I1 4AZBA 4KIKA 2F7QA 4MQDA 4ILHB 1Y2OA 3EJTA 2JNSA 2RAKA 4DYLA 2Z8YA 2ALWA 2LM0A 4EZXA 2PY6A 4IWPA 4AZ7A 1R5EA 2OZNB 4EZTA 1DKXA 2ZXQA 4NSWA 1DG4A 4JWDA 4IW0A 3QNJA 2YI8A 3T48A 5FIGA 1TQTA 3BUQA 3BVWA 3ERCC 3FD9A 3QNIA 3EJQA 3BUDA 4JNFA 2ND0A 3KAVA 1E9VA 4JLCA 4HYBA 2JNKA 3QWEA 3HAIA 1WDZA 2YL5A 4H6IA 2YIAA 2GA9D 3RPMA 4FL9A 3D4YA 3ZEDA 2OBMA 3L3PA 1HWWA 4EZSA 4JN4A 3O3MB 2ND1A 3EJPA 3B52X 1LQ7A 3BUIA 2YL9A 2EFLA 2V7YA 4H6HA 2LXYA 3ABHA 3PLTA 1YWMA 2RAJA 3DX0A 3D51A 4AKVA 2Z0NA 1QWNA 3CAZA 4PO2A 4AZCB 4E3CA 1O7DB 1TQUA 3DQGA 3HAHA 2YIBA 3DDGA 1GN9A 3OWGA 4D8JA 2QXLA 2OP6A 3OHXM 1I4TA 4E81A 2X5CA 3ER8C 4IWQA 3F7WA 3VEBA 2OBLA 3D2EA 3N8EA 1QWUA 3I01A 1ZWWA 1I4LA 3SOGA 4JWCA 3SYVA 4NQIA 2F1AA 3BVVA 1SUFA 3DX2A 3B53X 4EZVA 4JNEA 2YI9A 3Q84A 4I43A 4AZCA 3DPQA 4B9QA 2FICA 3I2WA 3I04A 4HY9A 1ZYLA 2D4CA 1E1DA 4WPCA 3M3WA 2WYIA 4WV5A 1U00A 1MJGA 1HTYA 2N3KA 4IM3A 2V0OA 3LMFA 1DKZA 4EZRA 3DPOA 3HAJA 5C5BB 2WYHA 1I4DA 4JWIA 1GNLA 4UDYX 3RV1A 3ER9B 1CKRA 4G6QA 4FZOA 3O3OB 2RT6A 3OK8A 2MI7A 3KDRA 4R5KA 4R5LA 2YLLA 4AZHA 4I1QA 3D2FA 4BNEA 3T46A 4HR1B 2FYVA 2X3VA 1O7DC 1E2UA 3Q0KA 4R5GA 2GAFD 3EJUA 1TQWA 2OW7A 4EZYA 4AZGA 1QX1A 3BVUA 3D52A 2YL6A 1PS3A 3DX4A 4EZZA 4R5JA 2RAIA 2WINM 1SU8A 2Q13A 1X03A 4FZPA 2F7OA 5C5BA 3ZEFA 4IM2A 3H0XA 1SU6A 3KAWA 3UITA 5E84A 3I39X 3SBTB 3T47A 4AVMA 3EJRA 4IWOA 2EX3B 3BUPA 2YIVX 3A98A 4EZNA 3D50A 3LVTA 4HR1A 3DX1A 1HXKA 2F1BA 3CZNA 1OA1A 4NPHA 4EZWA 3BUBA 4ILIA 4DCNC 3DYTA 1JQKA 3BVXA 3QA8A 3BVTA 2Q12A 2D1LA 2EWFA 3DPPA 4H8SA 3C7NB 2C08A 3CKDA
chains in the Genus database with same CATH topology
3RV1A 3ER9B 1CKRA 4G6QA 3O3OB 2RT6A 4F01A 3KDRA 4PO2A 2JNSA 4R5KA 1BPRA 4R5LA 4JL9A 4E3CA 1OA0A 1W9MA 1GNTA 2KHOA 3D2FA 3DQGA 2Z8YA 4IM0A 3L3OM 3T46A 2LM0A 4HR1B 4EZXA 2QFFA 2PY6A 1E2UA 4IWPA 4R5GA 2GAFD 3T4AG 1DKYA 2YIBA 1GN9A 3OWGA 4EZYA 4D8JA 2QXLA 2OP6A 4EZTA 1DKXA 1DG4A 4JWDA 3OHXM 4JWEA 4IW0A 5FLEX 4E81A 4F00A 2X5CA 3ER8C 3QNJA 4IWQA 3F7WA 3VEBA 4EZZA 4R5JA 2OBLA 2YI8A 3T48A 3D2EA 3N8EA 5FIGA 3I01A 4WV7A 4KIKB 3VKHA 2BPRA 2WINM 1SU8A 3ERCC 3FD9A 3RV0A 4JWCA 1OAOA 3ZEFA 1YUWA 5TKYA 4JNFA 4IM2A 2ND0A 3KAVA 4M0MA 4FM3A 1SUFA 1SU7A 3H0XA 1SU6A 1E9VA 3T49A 4JLCA 3C7NA 7HSCA 3B51X 3KAWA 3B53X 4HYBA 5E84A 3UITA 3I39X 4EZVA 1Q5LA 3SBTB 3T47A 3GI7A 4JNEA 2YI9A 4R5IA 4I43A 4H6IA 3DPQA 4IWOA 2YIAA 2EX3B 2GA9D 4FL9A 1UPXA 2YIVX 4B9QA 3A98A 4EZNA 3I04A 3ZEDA 2OBMA 4HY9A 4HR1A 1ZYLA 1E1DA 4EZSA 4WV5A 2NCZA 4EZUA 4UDXX 4JN4A 3O3MB 1OA1A 4NPHA 4EZWA 2ND1A 1U00A 3SBSA 4ILIA 1MJGA 3VEAA 2N3KA 4IM3A 3B52X 3LMFA 1DKZA 4EZRA 1JQKA 4ILGA 3DPOA 3DOBA 3QA8A 2V7YA 4JWIA 4EZQA 4H6HA 2EWFA 3DPPA 4EZPA 4EZOA 1GNLA 3O3NB 4UDYX 4KIKA 3C7NB 4MQDA 4ILHB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3OHX M;  4EZS A;  4JWE A;  1CKR A;  4EZR A;  4WV5 A;  4EZU A;  4JN4 A;  4E81 A;  4F01 A;  4F00 A;  4PO2 A;  4EZW A;  3H0X A;  4R5K A;  1U00 A;  4R5L A;  3QNJ A;  1BPR A;  3C7N B;  3T49 A;  1Q5L A;  7HSC A;  3C7N A;  4HYB A;  1DKZ A;  5E84 A;  4R5J A;  2KHO A;  3D2F A;  3T48 A;  4EZV A;  3T47 A;  4EZZ A;  4JNE A;  3D2E A;  3DQG A;  3DPO A;  3N8E A;  3L3O M;  4R5I A;  3T46 A;  3DOB A;  2V7Y A;  4H6I A;  4EZX A;  4JWI A;  4WV7 A;  2QFF A;  3DPQ A;  4EZQ A;  4H6H A;  2BPR A;  4FL9 A;  2WIN M;  4R5G A;  4B9Q A;  3T4A G;  1DKY A;  4JWC A;  3DPP A;  4EZN A;  4EZP A;  4EZO A;  4EZY A;  4HY9 A;  2QXL A;  1YUW A;  2OP6 A;  4EZT A;  1DKX A;  5TKY A;  4JNF A;  1DG4 A;  4JWD A; 
#chains in the Genus database with same CATH topology
 4F01 A;  1BPR A;  4JL9 A;  4WPE A;  2Z0V A;  1OA0 A;  3CVR A;  2X3X A;  1W9M A;  2F7R A;  1GNT A;  2KHO A;  3QE6 A;  4IM0 A;  3L3O M;  2QFF A;  1X04 A;  3T4A G;  1DKY A;  4AZ5 A;  3G9G A;  4JWE A;  2YL8 A;  5FLE X;  4F00 A;  1I49 A;  2OO2 A;  2F18 A;  2X3W A;  4WV7 A;  4KIK B;  3VKH A;  2BPR A;  3LLL A;  3RV0 A;  1OAO A;  3ACO A;  2YKT A;  1YUW A;  5TKY A;  4FZS A;  4M0M A;  4FM3 A;  1SU7 A;  3EJS A;  3T49 A;  7HSC A;  3C7N A;  3DDF A;  3B51 X;  1Q5L A;  2Z0O A;  3GI7 A;  4ATM A;  4R5I A;  1URU A;  1UPX A;  3CV5 A;  2PMR A;  1R33 A;  3D4Z A;  1R34 A;  1TQV A;  2QKW A;  2OW6 A;  2NCZ A;  4EZU A;  4UDX X;  2EFK A;  3SBS A;  5KBP A;  3VEA A;  3DX3 A;  4ILG A;  2GF4 A;  3DOB A;  4AZ6 A;  4AZI A;  3BLB A;  2F7P A;  4EZQ A;  1TQS A;  3CZS A;  2ELB A;  4EZP A;  4EZO A;  2YLA A;  3O3N B;  2O0I 1;  4AZB A;  4KIK A;  2F7Q A;  4MQD A;  4ILH B;  1Y2O A;  3EJT A;  2JNS A;  2RAK A;  4DYL A;  2Z8Y A;  2ALW A;  2LM0 A;  4EZX A;  2PY6 A;  4IWP A;  4AZ7 A;  1R5E A;  2OZN B;  4EZT A;  1DKX A;  2ZXQ A;  4NSW A;  1DG4 A;  4JWD A;  4IW0 A;  3QNJ A;  2YI8 A;  3T48 A;  5FIG A;  1TQT A;  3BUQ A;  3BVW A;  3ERC C;  3FD9 A;  3QNI A;  3EJQ A;  3BUD A;  4JNF A;  2ND0 A;  3KAV A;  1E9V A;  4JLC A;  4HYB A;  2JNK A;  3QWE A;  3HAI A;  1WDZ A;  2YL5 A;  4H6I A;  2YIA A;  2GA9 D;  3RPM A;  4FL9 A;  3D4Y A;  3ZED A;  2OBM A;  3L3P A;  1HWW A;  4EZS A;  4JN4 A;  3O3M B;  2ND1 A;  3EJP A;  3B52 X;  1LQ7 A;  3BUI A;  2YL9 A;  2EFL A;  2V7Y A;  4H6H A;  2LXY A;  3ABH A;  3PLT A;  1YWM A;  2RAJ A;  3DX0 A;  3D51 A;  4AKV A;  2Z0N A;  1QWN A;  3CAZ A;  4PO2 A;  4AZC B;  4E3C A;  1O7D B;  1TQU A;  3DQG A;  3HAH A;  2YIB A;  3DDG A;  1GN9 A;  3OWG A;  4D8J A;  2QXL A;  2OP6 A;  3OHX M;  1I4T A;  4E81 A;  2X5C A;  3ER8 C;  4IWQ A;  3F7W A;  3VEB A;  2OBL A;  3D2E A;  3N8E A;  1QWU A;  3I01 A;  1ZWW A;  1I4L A;  3SOG A;  4JWC A;  3SYV A;  4NQI A;  2F1A A;  3BVV A;  1SUF A;  3DX2 A;  3B53 X;  4EZV A;  4JNE A;  2YI9 A;  3Q84 A;  4I43 A;  4AZC A;  3DPQ A;  4B9Q A;  2FIC A;  3I2W A;  3I04 A;  4HY9 A;  1ZYL A;  2D4C A;  1E1D A;  4WPC A;  3M3W A;  2WYI A;  4WV5 A;  1U00 A;  1MJG A;  1HTY A;  2N3K A;  4IM3 A;  2V0O A;  3LMF A;  1DKZ A;  4EZR A;  3DPO A;  3HAJ A;  5C5B B;  2WYH A;  1I4D A;  4JWI A;  1GNL A;  4UDY X;  3RV1 A;  3ER9 B;  1CKR A;  4G6Q A;  4FZO A;  3O3O B;  2RT6 A;  3OK8 A;  2MI7 A;  3KDR A;  4R5K A;  4R5L A;  2YLL A;  4AZH A;  4I1Q A;  3D2F A;  4BNE A;  3T46 A;  4HR1 B;  2FYV A;  2X3V A;  1O7D C;  1E2U A;  3Q0K A;  4R5G A;  2GAF D;  3EJU A;  1TQW A;  2OW7 A;  4EZY A;  4AZG A;  1QX1 A;  3BVU A;  3D52 A;  2YL6 A;  1PS3 A;  3DX4 A;  4EZZ A;  4R5J A;  2RAI A;  2WIN M;  1SU8 A;  2Q13 A;  1X03 A;  4FZP A;  2F7O A;  5C5B A;  3ZEF A;  4IM2 A;  3H0X A;  1SU6 A;  3KAW A;  3UIT A;  5E84 A;  3I39 X;  3SBT B;  3T47 A;  4AVM A;  3EJR A;  4IWO A;  2EX3 B;  3BUP A;  2YIV X;  3A98 A;  4EZN A;  3D50 A;  3LVT A;  4HR1 A;  3DX1 A;  1HXK A;  2F1B A;  3CZN A;  1OA1 A;  4NPH A;  4EZW A;  3BUB A;  4ILI A;  4DCN C;  3DYT A;  1JQK A;  3BVX A;  3QA8 A;  3BVT A;  2Q12 A;  2D1L A;  2EWF A;  3DPP A;  4H8S A;  3C7N B;  2C08 A;  3CKD A; 
#chains in the Genus database with same CATH homology
 3RV1 A;  3ER9 B;  1CKR A;  4G6Q A;  3O3O B;  2RT6 A;  4F01 A;  3KDR A;  4PO2 A;  2JNS A;  4R5K A;  1BPR A;  4R5L A;  4JL9 A;  4E3C A;  1OA0 A;  1W9M A;  1GNT A;  2KHO A;  3D2F A;  3DQG A;  2Z8Y A;  4IM0 A;  3L3O M;  3T46 A;  2LM0 A;  4HR1 B;  4EZX A;  2QFF A;  2PY6 A;  1E2U A;  4IWP A;  4R5G A;  2GAF D;  3T4A G;  1DKY A;  2YIB A;  1GN9 A;  3OWG A;  4EZY A;  4D8J A;  2QXL A;  2OP6 A;  4EZT A;  1DKX A;  1DG4 A;  4JWD A;  3OHX M;  4JWE A;  4IW0 A;  5FLE X;  4E81 A;  4F00 A;  2X5C A;  3ER8 C;  3QNJ A;  4IWQ A;  3F7W A;  3VEB A;  4EZZ A;  4R5J A;  2OBL A;  2YI8 A;  3T48 A;  3D2E A;  3N8E A;  5FIG A;  3I01 A;  4WV7 A;  4KIK B;  3VKH A;  2BPR A;  2WIN M;  1SU8 A;  3ERC C;  3FD9 A;  3RV0 A;  4JWC A;  1OAO A;  3ZEF A;  1YUW A;  5TKY A;  4JNF A;  4IM2 A;  2ND0 A;  3KAV A;  4M0M A;  4FM3 A;  1SUF A;  1SU7 A;  3H0X A;  1SU6 A;  1E9V A;  3T49 A;  4JLC A;  3C7N A;  7HSC A;  3B51 X;  3KAW A;  3B53 X;  4HYB A;  5E84 A;  3UIT A;  3I39 X;  4EZV A;  1Q5L A;  3SBT B;  3T47 A;  3GI7 A;  4JNE A;  2YI9 A;  4R5I A;  4I43 A;  4H6I A;  3DPQ A;  4IWO A;  2YIA A;  2EX3 B;  2GA9 D;  4FL9 A;  1UPX A;  2YIV X;  4B9Q A;  3A98 A;  4EZN A;  3I04 A;  3ZED A;  2OBM A;  4HY9 A;  4HR1 A;  1ZYL A;  1E1D A;  4EZS A;  4WV5 A;  2NCZ A;  4EZU A;  4UDX X;  4JN4 A;  3O3M B;  1OA1 A;  4NPH A;  4EZW A;  2ND1 A;  1U00 A;  3SBS A;  4ILI A;  1MJG A;  3VEA A;  2N3K A;  4IM3 A;  3B52 X;  3LMF A;  1DKZ A;  4EZR A;  1JQK A;  4ILG A;  3DPO A;  3DOB A;  3QA8 A;  2V7Y A;  4JWI A;  4EZQ A;  4H6H A;  2EWF A;  3DPP A;  4EZP A;  4EZO A;  1GNL A;  3O3N B;  4UDY X;  4KIK A;  3C7N B;  4MQD A;  4ILH B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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