4JWEA

Crystal structure of the substrate binding domain of e.coli dnak in complex with sheep bac7(1-21)
Total Genus 62
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
62
sequence length
213
structure length
213
Chain Sequence
b'VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEI'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural Identification of DnaK Binding Sites within Bovine and Sheep Bactenecin Bac7.
pubmed rcsb
molecule keywords Chaperone protein DnaK
source organism Escherichia coli
molecule tags Chaperone/antibiotic
total genus 62
structure length 213
sequence length 213
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-03-27
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.10 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 4jweA02
2.60.34.10 Mainly Beta Sandwich Substrate Binding Domain Of DNAk; Chain A, domain 1 Substrate Binding Domain Of DNAk; Chain A, domain 1 4jweA01
2KHOA 2QFFA 4F00A 7HSCA 3T49A 1U00A 4EZVA 3H0XA 1YUWA 4EZQA 3T48A 4WV7A 4R5LA 4R5GA 2BPRA 4EZZA 4FL9A 1CKRA 4EZXA 1Q5LA 4JWIA 4R5KA 4F01A 3T46A 4B9QA 3DPOA 5E84A 5TKYA 3C7NB 1DKYA 2OP6A 2V7YA 4EZRA 3DOBA 1DKZA 2WINM 4HYBA 4EZTA 4PO2A 1BPRA 1DKXA 3C7NA 4EZUA 4JN4A 4EZYA 3DQGA 4E81A 3D2FA 4EZWA 3N8EA 3T47A 4JNEA 4R5JA 4HY9A 3D2EA 3OHXM 4JWEA 4EZPA 2QXLA 1DG4A 3DPQA 4H6HA 4JNFA 4JWDA 4EZOA 3DPPA 4H6IA 3L3OM 3T4AG 4WV5A 4R5IA 4JWCA 3QNJA 4EZSA 4EZNA
chains in the Genus database with same CATH superfamily
3RPMA 1I4DA 3T48A 4H8SA 3ZEDA 2RT6A 2OBLA 3T46A 4IWOA 1TQSA 3Q0KA 2NCZA 2F7PA 4E3CA 4HY9A 2RAKA 2Q13A 2F1BA 4EZOA 1TQUA 1TQWA 3ER9B 3H0XA 4R5LA 4R5GA 3OWGA 4AKVA 4JWIA 3BLBA 4AZ5A 3DDFA 5TKYA 2F18A 3ABHA 4MQDA 1E1DA 4AZIA 3VEBA 2C08A 2FYVA 4I1QA 2ND1A 4JNEA 1GNTA 3OHXM 3OK8A 2F7RA 1SU8A 3CKDA 1LQ7A 3BVUA 2MI7A 3BUPA 2YL9A 2KHOA 1SU6A 1TQVA 3GI7A 2EWFA 2YL8A 2WINM 2OZNB 4DYLA 1GN9A 4FZPA 3HAIA 3SBSA 2QKWA 2YI9A 3EJSA 1HXKA 4WPEA 2YKTA 1JQKA 1HTYA 3KAVA 4FM3A 2EFLA 3DX2A 2RAIA 1X03A 3ERCC 4DCNC 4NPHA 2GA9D 2O0I1 3DOBA 4ATMA 1ZYLA 2D1LA 5KBPA 1O7DC 3N8EA 3D4YA 1OA1A 3I01A 4H6HA 3LLLA 3O3MB 4WV5A 2N3KA 3BVXA 3G9GA 1I4TA 3I04A 3BVTA 1QX1A 5E84A 1E9VA 4IW0A 4EZUA 4IM3A 1I4LA 2RAJA 1E2UA 3HAJA 4JWDA 3RV0A 3D51A 3CVRA 3DX0A 1R5EA 4KIKB 2YIAA 4EZVA 4R5KA 4F01A 2WYHA 2OP6A 1DKZA 2D4CA 3QE6A 2JNKA 3T47A 1TQTA 3D2EA 1QWNA 3PLTA 4UDYX 3QNJA 2Z0OA 3EJPA 3I2WA 3BVWA 3EJQA 3EJTA 2LXYA 2GAFD 4PO2A 5FIGA 4FZOA 2ND0A 3DPQA 4G6QA 4R5IA 4JN4A 3RV1A 2Z0NA 3M3WA 4F00A 2X5CA 3VKHA 3CV5A 2YI8A 4WV7A 3ACOA 2ELBA 3EJRA 3C7NB 4UDXX 4HYBA 2X3VA 3O3NB 3CZSA 3DX4A 3LVTA 4EZPA 1PS3A 3B52X 4IWPA 3DPPA 4AVMA 2ZXQA 3BUQA 3DX3A 1I49A 4FL9A 4KIKA 2Z0VA 4B9QA 3SBTB 3BUIA 2V7YA 2YLAA 2Z8YA 3Q84A 5C5BB 2OW6A 2LM0A 2YLLA 1UPXA 3FD9A 3UITA 3O3OB 3B53X 4I43A 3HAHA 4EZQA 2FICA 3F7WA 2EFKA 2V0OA 3BVVA 5FLEX 4IM0A 4EZRA 4AZGA 3DDGA 1MJGA 2OBMA 3DQGA 4JLCA 4E81A 1O7DB 1YWMA 4IM2A 3DYTA 4ILIA 2F7QA 4AZ6A 2PMRA 1Y2OA 3D50A 4EZNA 2YL5A 4NSWA 3T49A 1U00A 2EX3B 2F7OA 3D52A 1OAOA 2OW7A 1Q5LA 1WDZA 4IWQA 4AZCB 3BUDA 2ALWA 3DX1A 3C7NA 3ER8C 3D2FA 4ILGA 4ILHB 3LMFA 4BNEA 1DG4A 4HR1B 3ZEFA 3T4AG 1W9MA 4JWCA 3D4ZA 1R33A 3SOGA 4EZZA 1CKRA 3BUBA 4WPCA 2WYIA 1HWWA 4D8JA 5C5BA 4JL9A 2X3WA 1SU7A 4H6IA 3EJUA 4R5JA 4EZXA 1URUA 2F1AA 1SUFA 2YL6A 4EZTA 2X3XA 2OO2A 2YIVX 3B51X 3QWEA 4JNFA 7HSCA 2QFFA 4AZ7A 3A98A 2PY6A 1QWUA 1YUWA 1X04A 3I39X 2Q12A 2BPRA 3CZNA 3DPOA 1DKYA 1R34A 4NQIA 1BPRA 4AZCA 2JNSA 4AZBA 3VEAA 3KAWA 3QNIA 3QA8A 1GNLA 4HR1A 2GF4A 3CAZA 4AZHA 3KDRA 3L3PA 4FZSA 1DKXA 4EZYA 4M0MA 4EZWA 3SYVA 2YIBA 4JWEA 1OA0A 2QXLA 1ZWWA 3L3OM 4EZSA
chains in the Genus database with same CATH topology
3RV1A 4F00A 2X5CA 3VKHA 3T48A 2YI8A 4WV7A 3ERCC 3ZEDA 4EZZA 1CKRA 2RT6A 2OBLA 3T46A 4NPHA 2GA9D 4IWOA 3C7NB 4UDXX 3DOBA 4HYBA 1ZYLA 3O3NB 2NCZA 4E3CA 3N8EA 4D8JA 1OA1A 4HY9A 4JL9A 4EZPA 3I01A 1SU7A 4H6HA 4EZOA 3B52X 4IWPA 3DPPA 4H6IA 3O3MB 4WV5A 4R5JA 4EZXA 2N3KA 3ER9B 1SUFA 3H0XA 3I04A 4R5LA 4R5GA 4FL9A 3OWGA 4KIKA 4JWIA 4B9QA 5E84A 5TKYA 3SBTB 2V7YA 1E9VA 2Z8YA 4EZTA 4IW0A 4MQDA 4EZUA 1E1DA 3VEBA 4IM3A 1E2UA 2LM0A 2YIVX 2ND1A 4JNEA 1GNTA 1UPXA 3OHXM 3B51X 3FD9A 1SU8A 4JNFA 4JWDA 3UITA 2KHOA 1SU6A 2QFFA 3RV0A 7HSCA 3O3OB 3B53X 4I43A 4KIKB 2YIAA 2PY6A 3A98A 4EZVA 4EZQA 1YUWA 3I39X 3GI7A 2EWFA 2BPRA 3F7WA 4R5KA 5FLEX 4F01A 3DPOA 1DKYA 2OP6A 4IM0A 4EZRA 1DKZA 2WINM 1BPRA 2JNSA 1MJGA 3VEAA 2OBMA 3DQGA 3KAWA 4JLCA 4E81A 3QA8A 3T47A 1GN9A 4IM2A 3D2EA 4ILIA 4UDYX 1GNLA 3QNJA 4EZNA 3SBSA 4HR1A 3T49A 1U00A 2EX3B 1OAOA 2YI9A 1Q5LA 4IWQA 2GAFD 3KDRA 4PO2A 1DKXA 3C7NA 3ER8C 4EZYA 4M0MA 5FIGA 3D2FA 4ILGA 4EZWA 4ILHB 2YIBA 2ND0A 1JQKA 4JWEA 3LMFA 3KAVA 1OA0A 2QXLA 1DG4A 3DPQA 4G6QA 4HR1B 3ZEFA 4FM3A 3L3OM 3T4AG 1W9MA 4R5IA 4JWCA 4JN4A 4EZSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KHO A;  2QFF A;  4F00 A;  7HSC A;  3T49 A;  1U00 A;  4EZV A;  3H0X A;  1YUW A;  4EZQ A;  3T48 A;  4WV7 A;  4R5L A;  4R5G A;  2BPR A;  4EZZ A;  4FL9 A;  1CKR A;  4EZX A;  1Q5L A;  4JWI A;  4R5K A;  4F01 A;  3T46 A;  4B9Q A;  3DPO A;  5E84 A;  5TKY A;  3C7N B;  1DKY A;  2OP6 A;  2V7Y A;  4EZR A;  3DOB A;  1DKZ A;  2WIN M;  4HYB A;  4EZT A;  4PO2 A;  1BPR A;  1DKX A;  3C7N A;  4EZU A;  4JN4 A;  4EZY A;  3DQG A;  4E81 A;  3D2F A;  4EZW A;  3N8E A;  3T47 A;  4JNE A;  4R5J A;  4HY9 A;  3D2E A;  3OHX M;  4JWE A;  4EZP A;  2QXL A;  1DG4 A;  3DPQ A;  4H6H A;  4JNF A;  4JWD A;  4EZO A;  3DPP A;  4H6I A;  3L3O M;  3T4A G;  4WV5 A;  4R5I A;  4JWC A;  3QNJ A;  4EZS A;  4EZN A; 
#chains in the Genus database with same CATH topology
 3RPM A;  1I4D A;  3T48 A;  4H8S A;  3ZED A;  2RT6 A;  2OBL A;  3T46 A;  4IWO A;  1TQS A;  3Q0K A;  2NCZ A;  2F7P A;  4E3C A;  4HY9 A;  2RAK A;  2Q13 A;  2F1B A;  4EZO A;  1TQU A;  1TQW A;  3ER9 B;  3H0X A;  4R5L A;  4R5G A;  3OWG A;  4AKV A;  4JWI A;  3BLB A;  4AZ5 A;  3DDF A;  5TKY A;  2F18 A;  3ABH A;  4MQD A;  1E1D A;  4AZI A;  3VEB A;  2C08 A;  2FYV A;  4I1Q A;  2ND1 A;  4JNE A;  1GNT A;  3OHX M;  3OK8 A;  2F7R A;  1SU8 A;  3CKD A;  1LQ7 A;  3BVU A;  2MI7 A;  3BUP A;  2YL9 A;  2KHO A;  1SU6 A;  1TQV A;  3GI7 A;  2EWF A;  2YL8 A;  2WIN M;  2OZN B;  4DYL A;  1GN9 A;  4FZP A;  3HAI A;  3SBS A;  2QKW A;  2YI9 A;  3EJS A;  1HXK A;  4WPE A;  2YKT A;  1JQK A;  1HTY A;  3KAV A;  4FM3 A;  2EFL A;  3DX2 A;  2RAI A;  1X03 A;  3ERC C;  4DCN C;  4NPH A;  2GA9 D;  2O0I 1;  3DOB A;  4ATM A;  1ZYL A;  2D1L A;  5KBP A;  1O7D C;  3N8E A;  3D4Y A;  1OA1 A;  3I01 A;  4H6H A;  3LLL A;  3O3M B;  4WV5 A;  2N3K A;  3BVX A;  3G9G A;  1I4T A;  3I04 A;  3BVT A;  1QX1 A;  5E84 A;  1E9V A;  4IW0 A;  4EZU A;  4IM3 A;  1I4L A;  2RAJ A;  1E2U A;  3HAJ A;  4JWD A;  3RV0 A;  3D51 A;  3CVR A;  3DX0 A;  1R5E A;  4KIK B;  2YIA A;  4EZV A;  4R5K A;  4F01 A;  2WYH A;  2OP6 A;  1DKZ A;  2D4C A;  3QE6 A;  2JNK A;  3T47 A;  1TQT A;  3D2E A;  1QWN A;  3PLT A;  4UDY X;  3QNJ A;  2Z0O A;  3EJP A;  3I2W A;  3BVW A;  3EJQ A;  3EJT A;  2LXY A;  2GAF D;  4PO2 A;  5FIG A;  4FZO A;  2ND0 A;  3DPQ A;  4G6Q A;  4R5I A;  4JN4 A;  3RV1 A;  2Z0N A;  3M3W A;  4F00 A;  2X5C A;  3VKH A;  3CV5 A;  2YI8 A;  4WV7 A;  3ACO A;  2ELB A;  3EJR A;  3C7N B;  4UDX X;  4HYB A;  2X3V A;  3O3N B;  3CZS A;  3DX4 A;  3LVT A;  4EZP A;  1PS3 A;  3B52 X;  4IWP A;  3DPP A;  4AVM A;  2ZXQ A;  3BUQ A;  3DX3 A;  1I49 A;  4FL9 A;  4KIK A;  2Z0V A;  4B9Q A;  3SBT B;  3BUI A;  2V7Y A;  2YLA A;  2Z8Y A;  3Q84 A;  5C5B B;  2OW6 A;  2LM0 A;  2YLL A;  1UPX A;  3FD9 A;  3UIT A;  3O3O B;  3B53 X;  4I43 A;  3HAH A;  4EZQ A;  2FIC A;  3F7W A;  2EFK A;  2V0O A;  3BVV A;  5FLE X;  4IM0 A;  4EZR A;  4AZG A;  3DDG A;  1MJG A;  2OBM A;  3DQG A;  4JLC A;  4E81 A;  1O7D B;  1YWM A;  4IM2 A;  3DYT A;  4ILI A;  2F7Q A;  4AZ6 A;  2PMR A;  1Y2O A;  3D50 A;  4EZN A;  2YL5 A;  4NSW A;  3T49 A;  1U00 A;  2EX3 B;  2F7O A;  3D52 A;  1OAO A;  2OW7 A;  1Q5L A;  1WDZ A;  4IWQ A;  4AZC B;  3BUD A;  2ALW A;  3DX1 A;  3C7N A;  3ER8 C;  3D2F A;  4ILG A;  4ILH B;  3LMF A;  4BNE A;  1DG4 A;  4HR1 B;  3ZEF A;  3T4A G;  1W9M A;  4JWC A;  3D4Z A;  1R33 A;  3SOG A;  4EZZ A;  1CKR A;  3BUB A;  4WPC A;  2WYI A;  1HWW A;  4D8J A;  5C5B A;  4JL9 A;  2X3W A;  1SU7 A;  4H6I A;  3EJU A;  4R5J A;  4EZX A;  1URU A;  2F1A A;  1SUF A;  2YL6 A;  4EZT A;  2X3X A;  2OO2 A;  2YIV X;  3B51 X;  3QWE A;  4JNF A;  7HSC A;  2QFF A;  4AZ7 A;  3A98 A;  2PY6 A;  1QWU A;  1YUW A;  1X04 A;  3I39 X;  2Q12 A;  2BPR A;  3CZN A;  3DPO A;  1DKY A;  1R34 A;  4NQI A;  1BPR A;  4AZC A;  2JNS A;  4AZB A;  3VEA A;  3KAW A;  3QNI A;  3QA8 A;  1GNL A;  4HR1 A;  2GF4 A;  3CAZ A;  4AZH A;  3KDR A;  3L3P A;  4FZS A;  1DKX A;  4EZY A;  4M0M A;  4EZW A;  3SYV A;  2YIB A;  4JWE A;  1OA0 A;  2QXL A;  1ZWW A;  3L3O M;  4EZS A; 
#chains in the Genus database with same CATH homology
 3RV1 A;  4F00 A;  2X5C A;  3VKH A;  3T48 A;  2YI8 A;  4WV7 A;  3ERC C;  3ZED A;  4EZZ A;  1CKR A;  2RT6 A;  2OBL A;  3T46 A;  4NPH A;  2GA9 D;  4IWO A;  3C7N B;  4UDX X;  3DOB A;  4HYB A;  1ZYL A;  3O3N B;  2NCZ A;  4E3C A;  3N8E A;  4D8J A;  1OA1 A;  4HY9 A;  4JL9 A;  4EZP A;  3I01 A;  1SU7 A;  4H6H A;  4EZO A;  3B52 X;  4IWP A;  3DPP A;  4H6I A;  3O3M B;  4WV5 A;  4R5J A;  4EZX A;  2N3K A;  3ER9 B;  1SUF A;  3H0X A;  3I04 A;  4R5L A;  4R5G A;  4FL9 A;  3OWG A;  4KIK A;  4JWI A;  4B9Q A;  5E84 A;  5TKY A;  3SBT B;  2V7Y A;  1E9V A;  2Z8Y A;  4EZT A;  4IW0 A;  4MQD A;  4EZU A;  1E1D A;  3VEB A;  4IM3 A;  1E2U A;  2LM0 A;  2YIV X;  2ND1 A;  4JNE A;  1GNT A;  1UPX A;  3OHX M;  3B51 X;  3FD9 A;  1SU8 A;  4JNF A;  4JWD A;  3UIT A;  2KHO A;  1SU6 A;  2QFF A;  3RV0 A;  7HSC A;  3O3O B;  3B53 X;  4I43 A;  4KIK B;  2YIA A;  2PY6 A;  3A98 A;  4EZV A;  4EZQ A;  1YUW A;  3I39 X;  3GI7 A;  2EWF A;  2BPR A;  3F7W A;  4R5K A;  5FLE X;  4F01 A;  3DPO A;  1DKY A;  2OP6 A;  4IM0 A;  4EZR A;  1DKZ A;  2WIN M;  1BPR A;  2JNS A;  1MJG A;  3VEA A;  2OBM A;  3DQG A;  3KAW A;  4JLC A;  4E81 A;  3QA8 A;  3T47 A;  1GN9 A;  4IM2 A;  3D2E A;  4ILI A;  4UDY X;  1GNL A;  3QNJ A;  4EZN A;  3SBS A;  4HR1 A;  3T49 A;  1U00 A;  2EX3 B;  1OAO A;  2YI9 A;  1Q5L A;  4IWQ A;  2GAF D;  3KDR A;  4PO2 A;  1DKX A;  3C7N A;  3ER8 C;  4EZY A;  4M0M A;  5FIG A;  3D2F A;  4ILG A;  4EZW A;  4ILH B;  2YIB A;  2ND0 A;  1JQK A;  4JWE A;  3LMF A;  3KAV A;  1OA0 A;  2QXL A;  1DG4 A;  3DPQ A;  4G6Q A;  4HR1 B;  3ZEF A;  4FM3 A;  3L3O M;  3T4A G;  1W9M A;  4R5I A;  4JWC A;  4JN4 A;  4EZS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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