4JWEA

Crystal structure of the substrate binding domain of e.coli dnak in complex with sheep bac7(1-21)
Total Genus 62
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
62
sequence length
213
structure length
213
Chain Sequence
VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Chaperone/antibiotic
molecule keywords Chaperone protein DnaK
publication title Structural Identification of DnaK Binding Sites within Bovine and Sheep Bactenecin Bac7.
pubmed rcsb
source organism Escherichia coli
total genus 62
structure length 213
sequence length 213
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-03-27
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.10 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 4jweA02
2.60.34.10 Mainly Beta Sandwich Substrate Binding Domain Of DNAk; Chain A, domain 1 Substrate Binding Domain Of DNAk; Chain A, domain 1 4jweA01
4R5KA 4EZVA 2BPRA 1DKYA 3DPPA 4E81A 3D2EA 2QFFA 4JWEA 4EZXA 4F01A 4PO2A 4JWDA 4R5GA 3DOBA 7HSCA 1Q5LA 3C7NA 4R5JA 4H6IA 1YUWA 2KHOA 3T49A 3DPOA 4EZWA 4F00A 4EZTA 4EZSA 3C7NB 4WV5A 4JNEA 3OHXM 4EZOA 3D2FA 4B9QA 4EZPA 4R5LA 4EZNA 4JN4A 1DKXA 4JWIA 3T48A 4EZZA 4EZQA 4EZRA 1BPRA 4WV7A 1U00A 3T46A 4EZYA 3H0XA 1DG4A 4JWCA 2QXLA 5E84A 3DPQA 2OP6A 4HYBA 2V7YA 1CKRA 4H6HA 3T4AG 4HY9A 3L3OM 2WINM 4R5IA 4EZUA 4FL9A 3QNJA 1DKZA 3T47A 3DQGA 5TKYA 4JNFA 3N8EA
chains in the Genus database with same CATH superfamily
2YL8A 2PMRA 1QWUA 2D4CA 4FM3A 1WDZA 4R5LA 4JN4A 1DKXA 3Q0KA 3BUBA 4KIKA 3SYVA 1DG4A 1TQVA 3DPQA 2WINM 1I4LA 2F7OA 1SUFA 2F7PA 1YWMA 4ILIA 3D50A 2OW6A 2JNKA 3DPPA 3CVRA 4JWEA 3C7NA 4JL9A 4R5JA 4I43A 4EZSA 3DDGA 1URUA 3RV1A 4E3CA 2EX3B 1HTYA 3ER8C 2N3KA 1GNTA 3QNJA 3T47A 1TQUA 1E1DA 2X3XA 4IM3A 4H6IA 4ILHB 2OBMA 4JNEA 3OHXM 4JLCA 1R34A 2V0OA 3DDFA 1Y2OA 1BPRA 3QE6A 2RAJA 4AZIA 2OW7A 3O3OB 4WPCA 2MI7A 3CKDA 1O7DC 3CV5A 2OZNB 7HSCA 3OWGA 3M3WA 3QNIA 1QX1A 3QWEA 4BNEA 3I2WA 4KIKB 2YKTA 3BVVA 3VEBA 1GNLA 2RT6A 4I1QA 3EJRA 3C7NB 2ELBA 3BVUA 2F18A 2F7RA 1TQTA 2D1LA 3L3PA 3SBTB 3DQGA 3LLLA 2ND1A 4AVMA 2FYVA 1I49A 5KBPA 3DPOA 4NQIA 3BVXA 2ALWA 3ER9B 3VEAA 3A98A 4EZRA 3OK8A 2EFKA 2Z0VA 3FD9A 2F1BA 3PLTA 1ZYLA 3I01A 1OA1A 3ERCC 3DX3A 4FL9A 1DKZA 2OO2A 4AZHA 3N8EA 4R5KA 1W9MA 3RV0A 3DX1A 2PY6A 3BUQA 4WV5A 2Z0OA 4ATMA 2YLAA 2QXLA 3ACOA 1I4TA 2ND0A 3KDRA 2BPRA 2YIAA 4IWOA 1LQ7A 3HAHA 3BUDA 3BUPA 2KHOA 4F00A 2X3VA 4B9QA 4WPEA 1X03A 4IW0A 1U00A 2RAKA 4FZSA 2YIVX 4AZ5A 3D52A 1DKYA 5FLEX 4EZXA 3DOBA 4PO2A 1TQWA 2YLLA 3O3NB 3D4ZA 4EZOA 3CZNA 4IWQA 3CZSA 2GF4A 2YL6A 3EJSA 4H6HA 3T4AG 3D4YA 4AKVA 3L3OM 3KAWA 3Q84A 4HR1A 4F01A 3CAZA 4R5GA 1Q5LA 2Q12A 1I4DA 2NCZA 4IM0A 3B51X 2X5CA 2WYIA 4EZZA 4FZOA 3ABHA 2EFLA 4EZYA 1SU8A 4JWCA 3RPMA 1E2UA 3VKHA 3F7WA 4JNFA 3B52X 4FZPA 2QFFA 4JWDA 3HAIA 4DCNC 3D2FA 5C5BB 3T48A 4NPHA 3DX4A 4AZCB 3EJUA 4M0MA 2GAFD 4AZ6A 1TQSA 5E84A 1X04A 4G6QA 3EJPA 3HAJA 1QWNA 2YL9A 3B53X 4IM2A 2O0I1 4WV7A 3D51A 1OAOA 2YL5A 3KAVA 1GN9A 4MQDA 2F7QA 2C08A 4HR1B 1YUWA 3BVWA 5C5BA 3LVTA 3QA8A 1R5EA 3EJTA 2Z8YA 2YI8A 4JWIA 4EZQA 3LMFA 2QKWA 4AZCA 1UPXA 4DYLA 1JQKA 1O7DB 2OBLA 1HWWA 2WYHA 5TKYA 4EZVA 4E81A 3DX2A 2ZXQA 1PS3A 3EJQA 3BVTA 2RAIA 4IWPA 3SBSA 3DYTA 3DX0A 3ZEDA 4ILGA 4H8SA 4HY9A 3BLBA 1HXKA 1MJGA 2F1AA 4UDXX 1OA0A 2LM0A 4NSWA 2LXYA 4EZWA 4D8JA 3UITA 1SU7A 4AZBA 2YIBA 1SU6A 4EZNA 3T46A 4AZGA 3BUIA 5FIGA 2JNSA 3D2EA 3G9GA 3I04A 2GA9D 2X3WA 3T49A 4EZTA 1R33A 3SOGA 3GI7A 1ZWWA 2Z0NA 3O3MB 4EZPA 4AZ7A 2FICA 3H0XA 2EWFA 2OP6A 4HYBA 2V7YA 1CKRA 3I39X 4UDYX 4R5IA 4EZUA 2Q13A 3ZEFA 1E9VA 2YI9A
chains in the Genus database with same CATH topology
3VEBA 1DKYA 1GNLA 5FLEX 4EZXA 3DOBA 4PO2A 2RT6A 4HR1B 3O3NB 1YUWA 3C7NB 4FM3A 4EZOA 3QA8A 4IWQA 4R5LA 2Z8YA 4JN4A 1DKXA 2YI8A 4JWIA 4EZQA 4KIKA 3LMFA 1DG4A 3DPQA 1UPXA 4H6HA 3T4AG 1JQKA 3L3OM 2OBLA 2WINM 3KAWA 1SUFA 4ILIA 3DQGA 5TKYA 3SBTB 4EZVA 2ND1A 3DPPA 4E81A 4HR1A 4JWEA 4F01A 4R5GA 1Q5LA 3C7NA 4JL9A 4R5JA 4I43A 3DPOA 2NCZA 4IM0A 4EZSA 3RV1A 4IWPA 3B51X 2X5CA 3ER9B 3SBSA 4E3CA 3VEAA 3ZEDA 3A98A 4ILGA 2EX3B 4EZZA 4EZRA 3FD9A 4EZYA 1SU8A 4JWCA 3ER8C 1ZYLA 3I01A 2N3KA 1OA1A 1E2UA 3VKHA 3F7WA 3ERCC 1GNTA 4HY9A 4FL9A 3QNJA 1DKZA 3T47A 4JNFA 3B52X 3N8EA 1E1DA 4R5KA 1MJGA 1W9MA 3RV0A 2QFFA 4UDXX 4JWDA 1OA0A 2PY6A 2LM0A 4IM3A 4H6IA 4ILHB 2OBMA 4EZWA 4WV5A 4D8JA 4JNEA 3UITA 3OHXM 1SU7A 4JLCA 3D2FA 2YIBA 1SU6A 4EZNA 3T48A 1BPRA 3T46A 4NPHA 3O3OB 2QXLA 4M0MA 2GAFD 2ND0A 3KDRA 5E84A 5FIGA 2BPRA 2YIAA 4G6QA 4IWOA 2JNSA 3D2EA 3I04A 7HSCA 3OWGA 2GA9D 2KHOA 3T49A 4F00A 4EZTA 3GI7A 3B53X 4IM2A 4B9QA 3O3MB 4EZPA 4WV7A 1OAOA 4IW0A 1U00A 4KIKB 3H0XA 2EWFA 2OP6A 4HYBA 2V7YA 1CKRA 3I39X 2YIVX 4UDYX 3KAVA 1GN9A 4R5IA 4EZUA 4MQDA 3ZEFA 1E9VA 2YI9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4R5K A;  4EZV A;  2BPR A;  1DKY A;  3DPP A;  4E81 A;  3D2E A;  2QFF A;  4JWE A;  4EZX A;  4F01 A;  4PO2 A;  4JWD A;  4R5G A;  3DOB A;  7HSC A;  1Q5L A;  3C7N A;  4R5J A;  4H6I A;  1YUW A;  2KHO A;  3T49 A;  3DPO A;  4EZW A;  4F00 A;  4EZT A;  4EZS A;  3C7N B;  4WV5 A;  4JNE A;  3OHX M;  4EZO A;  3D2F A;  4B9Q A;  4EZP A;  4R5L A;  4EZN A;  4JN4 A;  1DKX A;  4JWI A;  3T48 A;  4EZZ A;  4EZQ A;  4EZR A;  1BPR A;  4WV7 A;  1U00 A;  3T46 A;  4EZY A;  3H0X A;  1DG4 A;  4JWC A;  2QXL A;  5E84 A;  3DPQ A;  2OP6 A;  4HYB A;  2V7Y A;  1CKR A;  4H6H A;  3T4A G;  4HY9 A;  3L3O M;  2WIN M;  4R5I A;  4EZU A;  4FL9 A;  3QNJ A;  1DKZ A;  3T47 A;  3DQG A;  5TKY A;  4JNF A;  3N8E A; 
#chains in the Genus database with same CATH topology
 2YL8 A;  2PMR A;  1QWU A;  2D4C A;  4FM3 A;  1WDZ A;  4R5L A;  4JN4 A;  1DKX A;  3Q0K A;  3BUB A;  4KIK A;  3SYV A;  1DG4 A;  1TQV A;  3DPQ A;  2WIN M;  1I4L A;  2F7O A;  1SUF A;  2F7P A;  1YWM A;  4ILI A;  3D50 A;  2OW6 A;  2JNK A;  3DPP A;  3CVR A;  4JWE A;  3C7N A;  4JL9 A;  4R5J A;  4I43 A;  4EZS A;  3DDG A;  1URU A;  3RV1 A;  4E3C A;  2EX3 B;  1HTY A;  3ER8 C;  2N3K A;  1GNT A;  3QNJ A;  3T47 A;  1TQU A;  1E1D A;  2X3X A;  4IM3 A;  4H6I A;  4ILH B;  2OBM A;  4JNE A;  3OHX M;  4JLC A;  1R34 A;  2V0O A;  3DDF A;  1Y2O A;  1BPR A;  3QE6 A;  2RAJ A;  4AZI A;  2OW7 A;  3O3O B;  4WPC A;  2MI7 A;  3CKD A;  1O7D C;  3CV5 A;  2OZN B;  7HSC A;  3OWG A;  3M3W A;  3QNI A;  1QX1 A;  3QWE A;  4BNE A;  3I2W A;  4KIK B;  2YKT A;  3BVV A;  3VEB A;  1GNL A;  2RT6 A;  4I1Q A;  3EJR A;  3C7N B;  2ELB A;  3BVU A;  2F18 A;  2F7R A;  1TQT A;  2D1L A;  3L3P A;  3SBT B;  3DQG A;  3LLL A;  2ND1 A;  4AVM A;  2FYV A;  1I49 A;  5KBP A;  3DPO A;  4NQI A;  3BVX A;  2ALW A;  3ER9 B;  3VEA A;  3A98 A;  4EZR A;  3OK8 A;  2EFK A;  2Z0V A;  3FD9 A;  2F1B A;  3PLT A;  1ZYL A;  3I01 A;  1OA1 A;  3ERC C;  3DX3 A;  4FL9 A;  1DKZ A;  2OO2 A;  4AZH A;  3N8E A;  4R5K A;  1W9M A;  3RV0 A;  3DX1 A;  2PY6 A;  3BUQ A;  4WV5 A;  2Z0O A;  4ATM A;  2YLA A;  2QXL A;  3ACO A;  1I4T A;  2ND0 A;  3KDR A;  2BPR A;  2YIA A;  4IWO A;  1LQ7 A;  3HAH A;  3BUD A;  3BUP A;  2KHO A;  4F00 A;  2X3V A;  4B9Q A;  4WPE A;  1X03 A;  4IW0 A;  1U00 A;  2RAK A;  4FZS A;  2YIV X;  4AZ5 A;  3D52 A;  1DKY A;  5FLE X;  4EZX A;  3DOB A;  4PO2 A;  1TQW A;  2YLL A;  3O3N B;  3D4Z A;  4EZO A;  3CZN A;  4IWQ A;  3CZS A;  2GF4 A;  2YL6 A;  3EJS A;  4H6H A;  3T4A G;  3D4Y A;  4AKV A;  3L3O M;  3KAW A;  3Q84 A;  4HR1 A;  4F01 A;  3CAZ A;  4R5G A;  1Q5L A;  2Q12 A;  1I4D A;  2NCZ A;  4IM0 A;  3B51 X;  2X5C A;  2WYI A;  4EZZ A;  4FZO A;  3ABH A;  2EFL A;  4EZY A;  1SU8 A;  4JWC A;  3RPM A;  1E2U A;  3VKH A;  3F7W A;  4JNF A;  3B52 X;  4FZP A;  2QFF A;  4JWD A;  3HAI A;  4DCN C;  3D2F A;  5C5B B;  3T48 A;  4NPH A;  3DX4 A;  4AZC B;  3EJU A;  4M0M A;  2GAF D;  4AZ6 A;  1TQS A;  5E84 A;  1X04 A;  4G6Q A;  3EJP A;  3HAJ A;  1QWN A;  2YL9 A;  3B53 X;  4IM2 A;  2O0I 1;  4WV7 A;  3D51 A;  1OAO A;  2YL5 A;  3KAV A;  1GN9 A;  4MQD A;  2F7Q A;  2C08 A;  4HR1 B;  1YUW A;  3BVW A;  5C5B A;  3LVT A;  3QA8 A;  1R5E A;  3EJT A;  2Z8Y A;  2YI8 A;  4JWI A;  4EZQ A;  3LMF A;  2QKW A;  4AZC A;  1UPX A;  4DYL A;  1JQK A;  1O7D B;  2OBL A;  1HWW A;  2WYH A;  5TKY A;  4EZV A;  4E81 A;  3DX2 A;  2ZXQ A;  1PS3 A;  3EJQ A;  3BVT A;  2RAI A;  4IWP A;  3SBS A;  3DYT A;  3DX0 A;  3ZED A;  4ILG A;  4H8S A;  4HY9 A;  3BLB A;  1HXK A;  1MJG A;  2F1A A;  4UDX X;  1OA0 A;  2LM0 A;  4NSW A;  2LXY A;  4EZW A;  4D8J A;  3UIT A;  1SU7 A;  4AZB A;  2YIB A;  1SU6 A;  4EZN A;  3T46 A;  4AZG A;  3BUI A;  5FIG A;  2JNS A;  3D2E A;  3G9G A;  3I04 A;  2GA9 D;  2X3W A;  3T49 A;  4EZT A;  1R33 A;  3SOG A;  3GI7 A;  1ZWW A;  2Z0N A;  3O3M B;  4EZP A;  4AZ7 A;  2FIC A;  3H0X A;  2EWF A;  2OP6 A;  4HYB A;  2V7Y A;  1CKR A;  3I39 X;  4UDY X;  4R5I A;  4EZU A;  2Q13 A;  3ZEF A;  1E9V A;  2YI9 A; 
#chains in the Genus database with same CATH homology
 3VEB A;  1DKY A;  1GNL A;  5FLE X;  4EZX A;  3DOB A;  4PO2 A;  2RT6 A;  4HR1 B;  3O3N B;  1YUW A;  3C7N B;  4FM3 A;  4EZO A;  3QA8 A;  4IWQ A;  4R5L A;  2Z8Y A;  4JN4 A;  1DKX A;  2YI8 A;  4JWI A;  4EZQ A;  4KIK A;  3LMF A;  1DG4 A;  3DPQ A;  1UPX A;  4H6H A;  3T4A G;  1JQK A;  3L3O M;  2OBL A;  2WIN M;  3KAW A;  1SUF A;  4ILI A;  3DQG A;  5TKY A;  3SBT B;  4EZV A;  2ND1 A;  3DPP A;  4E81 A;  4HR1 A;  4JWE A;  4F01 A;  4R5G A;  1Q5L A;  3C7N A;  4JL9 A;  4R5J A;  4I43 A;  3DPO A;  2NCZ A;  4IM0 A;  4EZS A;  3RV1 A;  4IWP A;  3B51 X;  2X5C A;  3ER9 B;  3SBS A;  4E3C A;  3VEA A;  3ZED A;  3A98 A;  4ILG A;  2EX3 B;  4EZZ A;  4EZR A;  3FD9 A;  4EZY A;  1SU8 A;  4JWC A;  3ER8 C;  1ZYL A;  3I01 A;  2N3K A;  1OA1 A;  1E2U A;  3VKH A;  3F7W A;  3ERC C;  1GNT A;  4HY9 A;  4FL9 A;  3QNJ A;  1DKZ A;  3T47 A;  4JNF A;  3B52 X;  3N8E A;  1E1D A;  4R5K A;  1MJG A;  1W9M A;  3RV0 A;  2QFF A;  4UDX X;  4JWD A;  1OA0 A;  2PY6 A;  2LM0 A;  4IM3 A;  4H6I A;  4ILH B;  2OBM A;  4EZW A;  4WV5 A;  4D8J A;  4JNE A;  3UIT A;  3OHX M;  1SU7 A;  4JLC A;  3D2F A;  2YIB A;  1SU6 A;  4EZN A;  3T48 A;  1BPR A;  3T46 A;  4NPH A;  3O3O B;  2QXL A;  4M0M A;  2GAF D;  2ND0 A;  3KDR A;  5E84 A;  5FIG A;  2BPR A;  2YIA A;  4G6Q A;  4IWO A;  2JNS A;  3D2E A;  3I04 A;  7HSC A;  3OWG A;  2GA9 D;  2KHO A;  3T49 A;  4F00 A;  4EZT A;  3GI7 A;  3B53 X;  4IM2 A;  4B9Q A;  3O3M B;  4EZP A;  4WV7 A;  1OAO A;  4IW0 A;  1U00 A;  4KIK B;  3H0X A;  2EWF A;  2OP6 A;  4HYB A;  2V7Y A;  1CKR A;  3I39 X;  2YIV X;  4UDY X;  3KAV A;  1GN9 A;  4R5I A;  4EZU A;  4MQD A;  3ZEF A;  1E9V A;  2YI9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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