4JZ9A

Carbamate kinase from giardia lamblia bound to citric acid
Total Genus 107
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
107
sequence length
316
structure length
316
Chain Sequence
b'MSAGKTVVIALGGNAMLQAKEKGDYDTQRKNVEIAASEIYKIHKAGYKVVLTSGNGPQVGAIKLQNQAAAGVSPEMPLHVCGAMSQGFIGYMMSQAMDNVFCANNEPANCVTCVTQTLVDPKDQAFTNPTKPVGRFYTEQEAKDLMAANPGKILREDAGRGWRVVVPSPRPLEIVEYGVIKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNACINYKKPDERKLEEIKLSEILALEKDGHFAAGSMGPKVRAAIEFTQATGKMSIITSLSTAVDALNGKCGTRIIKD'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Carbamate kinase
publication title Crystal Structures of Carbamate Kinase from Giardia lamblia Bound with Citric Acid and AMP-PNP.
pubmed doi rcsb
source organism Giardia lamblia
molecule tags Transferase
total genus 107
structure length 316
sequence length 316
chains with identical sequence B, C, D
ec nomenclature ec 2.7.2.2: Carbamate kinase.
pdb deposition date 2013-04-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 4jz9A00
4AB7A 2V5HA 2R8VA 3QVHA 2WE4A 4NDOA 2JI5A 3LKKA 2BRIA 2W21A 3EK6A 4KZTA 3NWYA 4NDRB 2R98A 4USJA 2AP9A 3ZZHA 3C1NA 2JJXA 3D2MA 3WWNA 2A1FA 3D2PA 2AKOA 4I49A 2BTYA 3QUOA 2J4KA 2HMFA 2BNEA 4NDRA 3ZZIA 3S6KA 3K52A 4JZ7A 3ZZGA 3S6GA 1B7BA 2BNDA 2IJ9A 3QVFA 2E9YA 1E19A 2BMUA 2J4JA 3C1MA 2J5VA 4JZ9A 3K4OA 4NDQB 2BNFA 4AXSA 3KZFA 1GS5A 3U6UA 2BRXA 2WXBA 3TVIA 2WE5A 2CDQA 2J4LA 1YBDA 4NDQA 3L86A 2V4YA 3AAWA 2J0WA 3ZZFA 3LL9A 3AB4A 3L76A 4F6TB 4NDPB 2X2WA 3LL5A 4OLCA 3QUNA 3D41A 2J5TA 2JJ4A 2VA1A 1GSJA 2BUFA 1Z9DA 3B8GA 4JZ8A 3AB2A 3QURA 2OGXB 1OH9A 4F6TA 3K56A 4NDPA 3WWMA 3C20A 4NDOB 3K4YA 4Q1TA 3EK5A 3D40A 2J0XA 3T7BA 4A7WA 1OHBA 2RD5A 4A7XA 2OGXA 3S6HA 1OHAA
chains in the Genus database with same CATH superfamily
4AB7A 2V5HA 2R8VA 3QVHA 2WE4A 4NDOA 2JI5A 3LKKA 2BRIA 2W21A 3EK6A 4KZTA 3NWYA 4NDRB 2R98A 4USJA 2AP9A 3ZZHA 3C1NA 2JJXA 3D2MA 3WWNA 2A1FA 3D2PA 2AKOA 4I49A 2BTYA 3QUOA 2J4KA 2HMFA 2BNEA 4NDRA 3ZZIA 3S6KA 3K52A 4JZ7A 3ZZGA 3S6GA 1B7BA 2BNDA 2IJ9A 3QVFA 2E9YA 1E19A 2BMUA 2J4JA 3C1MA 2J5VA 4JZ9A 3K4OA 4NDQB 2BNFA 4AXSA 3KZFA 1GS5A 3U6UA 2BRXA 2WXBA 3TVIA 2WE5A 2CDQA 2J4LA 1YBDA 4NDQA 3L86A 2V4YA 3AAWA 2J0WA 3ZZFA 3LL9A 3AB4A 3L76A 4F6TB 4NDPB 2X2WA 3LL5A 4OLCA 3QUNA 3D41A 2J5TA 2JJ4A 2VA1A 1GSJA 2BUFA 1Z9DA 3B8GA 4JZ8A 3AB2A 3QURA 2OGXB 1OH9A 4F6TA 3K56A 4NDPA 3WWMA 3C20A 4NDOB 3K4YA 4Q1TA 3EK5A 3D40A 2J0XA 3T7BA 4A7WA 1OHBA 2RD5A 4A7XA 2OGXA 3S6HA 1OHAA
chains in the Genus database with same CATH topology
4AB7A 2V5HA 2R8VA 3QVHA 2WE4A 4NDOA 2JI5A 3LKKA 2BRIA 2W21A 3EK6A 4KZTA 3NWYA 4NDRB 2R98A 4USJA 2AP9A 3ZZHA 3C1NA 2JJXA 3D2MA 3WWNA 2A1FA 3D2PA 2AKOA 4I49A 2BTYA 3QUOA 2J4KA 2HMFA 2BNEA 4NDRA 3ZZIA 3S6KA 3K52A 4JZ7A 3ZZGA 3S6GA 1B7BA 2BNDA 2IJ9A 3QVFA 2E9YA 1E19A 2BMUA 2J4JA 3C1MA 2J5VA 4JZ9A 3K4OA 4NDQB 2BNFA 4AXSA 3KZFA 1GS5A 3U6UA 2BRXA 2WXBA 3TVIA 2WE5A 2CDQA 2J4LA 1YBDA 4NDQA 3L86A 2V4YA 3AAWA 2J0WA 3ZZFA 3LL9A 3AB4A 3L76A 4F6TB 4NDPB 2X2WA 3LL5A 4OLCA 3QUNA 3D41A 2J5TA 2JJ4A 2VA1A 1GSJA 2BUFA 1Z9DA 3B8GA 4JZ8A 3AB2A 3QURA 2OGXB 1OH9A 4F6TA 3K56A 4NDPA 3WWMA 3C20A 4NDOB 3K4YA 4Q1TA 3EK5A 3D40A 2J0XA 3T7BA 4A7WA 1OHBA 2RD5A 4A7XA 2OGXA 3S6HA 1OHAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AB7 A;  2V5H A;  2R8V A;  3QVH A;  2WE4 A;  4NDO A;  2JI5 A;  3LKK A;  2BRI A;  2W21 A;  3EK6 A;  4KZT A;  3NWY A;  4NDR B;  2R98 A;  4USJ A;  2AP9 A;  3ZZH A;  3C1N A;  2JJX A;  3D2M A;  3WWN A;  2A1F A;  3D2P A;  2AKO A;  4I49 A;  2BTY A;  3QUO A;  2J4K A;  2HMF A;  2BNE A;  4NDR A;  3ZZI A;  3S6K A;  3K52 A;  4JZ7 A;  3ZZG A;  3S6G A;  1B7B A;  2BND A;  2IJ9 A;  3QVF A;  2E9Y A;  1E19 A;  2BMU A;  2J4J A;  3C1M A;  2J5V A;  4JZ9 A;  3K4O A;  4NDQ B;  2BNF A;  4AXS A;  3KZF A;  1GS5 A;  3U6U A;  2BRX A;  2WXB A;  3TVI A;  2WE5 A;  2CDQ A;  2J4L A;  1YBD A;  4NDQ A;  3L86 A;  2V4Y A;  3AAW A;  2J0W A;  3ZZF A;  3LL9 A;  3AB4 A;  3L76 A;  4F6T B;  4NDP B;  2X2W A;  3LL5 A;  4OLC A;  3QUN A;  3D41 A;  2J5T A;  2JJ4 A;  2VA1 A;  1GSJ A;  2BUF A;  1Z9D A;  3B8G A;  4JZ8 A;  3AB2 A;  3QUR A;  2OGX B;  1OH9 A;  4F6T A;  3K56 A;  4NDP A;  3WWM A;  3C20 A;  4NDO B;  3K4Y A;  4Q1T A;  3EK5 A;  3D40 A;  2J0X A;  3T7B A;  4A7W A;  1OHB A;  2RD5 A;  4A7X A;  2OGX A;  3S6H A;  1OHA A; 
#chains in the Genus database with same CATH topology
 4AB7 A;  2V5H A;  2R8V A;  3QVH A;  2WE4 A;  4NDO A;  2JI5 A;  3LKK A;  2BRI A;  2W21 A;  3EK6 A;  4KZT A;  3NWY A;  4NDR B;  2R98 A;  4USJ A;  2AP9 A;  3ZZH A;  3C1N A;  2JJX A;  3D2M A;  3WWN A;  2A1F A;  3D2P A;  2AKO A;  4I49 A;  2BTY A;  3QUO A;  2J4K A;  2HMF A;  2BNE A;  4NDR A;  3ZZI A;  3S6K A;  3K52 A;  4JZ7 A;  3ZZG A;  3S6G A;  1B7B A;  2BND A;  2IJ9 A;  3QVF A;  2E9Y A;  1E19 A;  2BMU A;  2J4J A;  3C1M A;  2J5V A;  4JZ9 A;  3K4O A;  4NDQ B;  2BNF A;  4AXS A;  3KZF A;  1GS5 A;  3U6U A;  2BRX A;  2WXB A;  3TVI A;  2WE5 A;  2CDQ A;  2J4L A;  1YBD A;  4NDQ A;  3L86 A;  2V4Y A;  3AAW A;  2J0W A;  3ZZF A;  3LL9 A;  3AB4 A;  3L76 A;  4F6T B;  4NDP B;  2X2W A;  3LL5 A;  4OLC A;  3QUN A;  3D41 A;  2J5T A;  2JJ4 A;  2VA1 A;  1GSJ A;  2BUF A;  1Z9D A;  3B8G A;  4JZ8 A;  3AB2 A;  3QUR A;  2OGX B;  1OH9 A;  4F6T A;  3K56 A;  4NDP A;  3WWM A;  3C20 A;  4NDO B;  3K4Y A;  4Q1T A;  3EK5 A;  3D40 A;  2J0X A;  3T7B A;  4A7W A;  1OHB A;  2RD5 A;  4A7X A;  2OGX A;  3S6H A;  1OHA A; 
#chains in the Genus database with same CATH homology
 4AB7 A;  2V5H A;  2R8V A;  3QVH A;  2WE4 A;  4NDO A;  2JI5 A;  3LKK A;  2BRI A;  2W21 A;  3EK6 A;  4KZT A;  3NWY A;  4NDR B;  2R98 A;  4USJ A;  2AP9 A;  3ZZH A;  3C1N A;  2JJX A;  3D2M A;  3WWN A;  2A1F A;  3D2P A;  2AKO A;  4I49 A;  2BTY A;  3QUO A;  2J4K A;  2HMF A;  2BNE A;  4NDR A;  3ZZI A;  3S6K A;  3K52 A;  4JZ7 A;  3ZZG A;  3S6G A;  1B7B A;  2BND A;  2IJ9 A;  3QVF A;  2E9Y A;  1E19 A;  2BMU A;  2J4J A;  3C1M A;  2J5V A;  4JZ9 A;  3K4O A;  4NDQ B;  2BNF A;  4AXS A;  3KZF A;  1GS5 A;  3U6U A;  2BRX A;  2WXB A;  3TVI A;  2WE5 A;  2CDQ A;  2J4L A;  1YBD A;  4NDQ A;  3L86 A;  2V4Y A;  3AAW A;  2J0W A;  3ZZF A;  3LL9 A;  3AB4 A;  3L76 A;  4F6T B;  4NDP B;  2X2W A;  3LL5 A;  4OLC A;  3QUN A;  3D41 A;  2J5T A;  2JJ4 A;  2VA1 A;  1GSJ A;  2BUF A;  1Z9D A;  3B8G A;  4JZ8 A;  3AB2 A;  3QUR A;  2OGX B;  1OH9 A;  4F6T A;  3K56 A;  4NDP A;  3WWM A;  3C20 A;  4NDO B;  3K4Y A;  4Q1T A;  3EK5 A;  3D40 A;  2J0X A;  3T7B A;  4A7W A;  1OHB A;  2RD5 A;  4A7X A;  2OGX A;  3S6H A;  1OHA A; 
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