4JZ9A

Carbamate kinase from giardia lamblia bound to citric acid
Total Genus 107
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
107
sequence length
316
structure length
316
Chain Sequence
MSAGKTVVIALGGNAMLQAKEKGDYDTQRKNVEIAASEIYKIHKAGYKVVLTSGNGPQVGAIKLQNQAAAGVSPEMPLHVCGAMSQGFIGYMMSQAMDNVFCANNEPANCVTCVTQTLVDPKDQAFTNPTKPVGRFYTEQEAKDLMAANPGKILREDAGRGWRVVVPSPRPLEIVEYGVIKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNACINYKKPDERKLEEIKLSEILALEKDGHFAAGSMGPKVRAAIEFTQATGKMSIITSLSTAVDALNGKCGTRIIKD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Carbamate kinase
publication title Crystal Structures of Carbamate Kinase from Giardia lamblia Bound with Citric Acid and AMP-PNP.
pubmed doi rcsb
source organism Giardia lamblia
total genus 107
structure length 316
sequence length 316
chains with identical sequence B, C, D
ec nomenclature ec 2.7.2.2: Carbamate kinase.
pdb deposition date 2013-04-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 4jz9A00
3T7BA 2IJ9A 2R98A 1YBDA 2BUFA 2V5HA 4NDPA 2BTYA 3QVFA 1OHAA 2J0XA 3C20A 3D40A 3C1NA 3KZFA 4NDQA 2E9YA 2WE4A 3S6GA 4KZTA 4AXSA 3EK6A 2W21A 4I49A 2J4JA 3EK5A 2VA1A 2JI5A 2J5VA 3K4OA 3D41A 2BRIA 3L76A 1Z9DA 3TVIA 1OH9A 1OHBA 2X2WA 2AP9A 2BNDA 3K56A 2V4YA 3D2MA 4A7XA 3S6HA 2AKOA 2WE5A 3AAWA 2J4KA 3QURA 4AB7A 3D2PA 4NDOB 2HMFA 2A1FA 3QVHA 3ZZHA 3LL9A 3LL5A 1E19A 3C1MA 3AB4A 3WWNA 4NDRB 2JJXA 3ZZGA 4USJA 3K52A 4NDPB 3ZZIA 3L86A 2J5TA 1GSJA 4A7WA 4NDRA 3B8GA 3WWMA 2WXBA 4F6TB 2RD5A 2BNFA 2JJ4A 3S6KA 3K4YA 4NDOA 3ZZFA 2CDQA 2BMUA 2OGXB 3U6UA 3LKKA 3NWYA 4Q1TA 2BRXA 4F6TA 3QUOA 2BNEA 2J4LA 3QUNA 2J0WA 1B7BA 4OLCA 4JZ8A 4JZ9A 1GS5A 2R8VA 4JZ7A 4NDQB 2OGXA 3AB2A
chains in the Genus database with same CATH superfamily
3T7BA 2IJ9A 2R98A 1YBDA 2BUFA 2V5HA 4NDPA 2BTYA 3QVFA 1OHAA 2J0XA 3C20A 3D40A 3C1NA 3KZFA 4NDQA 2E9YA 2WE4A 3S6GA 4KZTA 4AXSA 3EK6A 2W21A 4I49A 2J4JA 3EK5A 2VA1A 2JI5A 2J5VA 3K4OA 3D41A 2BRIA 3L76A 1Z9DA 3TVIA 1OH9A 1OHBA 2X2WA 2AP9A 2BNDA 3K56A 2V4YA 3D2MA 4A7XA 3S6HA 2AKOA 2WE5A 3AAWA 2J4KA 3QURA 4AB7A 3D2PA 4NDOB 2HMFA 2A1FA 3QVHA 3ZZHA 3LL9A 3LL5A 1E19A 3C1MA 3AB4A 3WWNA 4NDRB 2JJXA 3ZZGA 4USJA 3K52A 4NDPB 3ZZIA 3L86A 2J5TA 1GSJA 4A7WA 4NDRA 3B8GA 3WWMA 2WXBA 4F6TB 2RD5A 2BNFA 2JJ4A 3S6KA 3K4YA 4NDOA 3ZZFA 2CDQA 2BMUA 2OGXB 3U6UA 3LKKA 3NWYA 4Q1TA 2BRXA 4F6TA 3QUOA 2BNEA 2J4LA 3QUNA 2J0WA 1B7BA 4OLCA 4JZ8A 4JZ9A 1GS5A 2R8VA 4JZ7A 4NDQB 2OGXA 3AB2A
chains in the Genus database with same CATH topology
3T7BA 2IJ9A 2R98A 1YBDA 2BUFA 2V5HA 4NDPA 2BTYA 3QVFA 1OHAA 2J0XA 3C20A 3D40A 3C1NA 3KZFA 4NDQA 2E9YA 2WE4A 3S6GA 4KZTA 4AXSA 3EK6A 2W21A 4I49A 2J4JA 3EK5A 2VA1A 2JI5A 2J5VA 3K4OA 3D41A 2BRIA 3L76A 1Z9DA 3TVIA 1OH9A 1OHBA 2X2WA 2AP9A 2BNDA 3K56A 2V4YA 3D2MA 4A7XA 3S6HA 2AKOA 2WE5A 3AAWA 2J4KA 3QURA 4AB7A 3D2PA 4NDOB 2HMFA 2A1FA 3QVHA 3ZZHA 3LL9A 3LL5A 1E19A 3C1MA 3AB4A 3WWNA 4NDRB 2JJXA 3ZZGA 4USJA 3K52A 4NDPB 3ZZIA 3L86A 2J5TA 1GSJA 4A7WA 4NDRA 3B8GA 3WWMA 2WXBA 4F6TB 2RD5A 2BNFA 2JJ4A 3S6KA 3K4YA 4NDOA 3ZZFA 2CDQA 2BMUA 2OGXB 3U6UA 3LKKA 3NWYA 4Q1TA 2BRXA 4F6TA 3QUOA 2BNEA 2J4LA 3QUNA 2J0WA 1B7BA 4OLCA 4JZ8A 4JZ9A 1GS5A 2R8VA 4JZ7A 4NDQB 2OGXA 3AB2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3T7B A;  2IJ9 A;  2R98 A;  1YBD A;  2BUF A;  2V5H A;  4NDP A;  2BTY A;  3QVF A;  1OHA A;  2J0X A;  3C20 A;  3D40 A;  3C1N A;  3KZF A;  4NDQ A;  2E9Y A;  2WE4 A;  3S6G A;  4KZT A;  4AXS A;  3EK6 A;  2W21 A;  4I49 A;  2J4J A;  3EK5 A;  2VA1 A;  2JI5 A;  2J5V A;  3K4O A;  3D41 A;  2BRI A;  3L76 A;  1Z9D A;  3TVI A;  1OH9 A;  1OHB A;  2X2W A;  2AP9 A;  2BND A;  3K56 A;  2V4Y A;  3D2M A;  4A7X A;  3S6H A;  2AKO A;  2WE5 A;  3AAW A;  2J4K A;  3QUR A;  4AB7 A;  3D2P A;  4NDO B;  2HMF A;  2A1F A;  3QVH A;  3ZZH A;  3LL9 A;  3LL5 A;  1E19 A;  3C1M A;  3AB4 A;  3WWN A;  4NDR B;  2JJX A;  3ZZG A;  4USJ A;  3K52 A;  4NDP B;  3ZZI A;  3L86 A;  2J5T A;  1GSJ A;  4A7W A;  4NDR A;  3B8G A;  3WWM A;  2WXB A;  4F6T B;  2RD5 A;  2BNF A;  2JJ4 A;  3S6K A;  3K4Y A;  4NDO A;  3ZZF A;  2CDQ A;  2BMU A;  2OGX B;  3U6U A;  3LKK A;  3NWY A;  4Q1T A;  2BRX A;  4F6T A;  3QUO A;  2BNE A;  2J4L A;  3QUN A;  2J0W A;  1B7B A;  4OLC A;  4JZ8 A;  4JZ9 A;  1GS5 A;  2R8V A;  4JZ7 A;  4NDQ B;  2OGX A;  3AB2 A; 
#chains in the Genus database with same CATH topology
 3T7B A;  2IJ9 A;  2R98 A;  1YBD A;  2BUF A;  2V5H A;  4NDP A;  2BTY A;  3QVF A;  1OHA A;  2J0X A;  3C20 A;  3D40 A;  3C1N A;  3KZF A;  4NDQ A;  2E9Y A;  2WE4 A;  3S6G A;  4KZT A;  4AXS A;  3EK6 A;  2W21 A;  4I49 A;  2J4J A;  3EK5 A;  2VA1 A;  2JI5 A;  2J5V A;  3K4O A;  3D41 A;  2BRI A;  3L76 A;  1Z9D A;  3TVI A;  1OH9 A;  1OHB A;  2X2W A;  2AP9 A;  2BND A;  3K56 A;  2V4Y A;  3D2M A;  4A7X A;  3S6H A;  2AKO A;  2WE5 A;  3AAW A;  2J4K A;  3QUR A;  4AB7 A;  3D2P A;  4NDO B;  2HMF A;  2A1F A;  3QVH A;  3ZZH A;  3LL9 A;  3LL5 A;  1E19 A;  3C1M A;  3AB4 A;  3WWN A;  4NDR B;  2JJX A;  3ZZG A;  4USJ A;  3K52 A;  4NDP B;  3ZZI A;  3L86 A;  2J5T A;  1GSJ A;  4A7W A;  4NDR A;  3B8G A;  3WWM A;  2WXB A;  4F6T B;  2RD5 A;  2BNF A;  2JJ4 A;  3S6K A;  3K4Y A;  4NDO A;  3ZZF A;  2CDQ A;  2BMU A;  2OGX B;  3U6U A;  3LKK A;  3NWY A;  4Q1T A;  2BRX A;  4F6T A;  3QUO A;  2BNE A;  2J4L A;  3QUN A;  2J0W A;  1B7B A;  4OLC A;  4JZ8 A;  4JZ9 A;  1GS5 A;  2R8V A;  4JZ7 A;  4NDQ B;  2OGX A;  3AB2 A; 
#chains in the Genus database with same CATH homology
 3T7B A;  2IJ9 A;  2R98 A;  1YBD A;  2BUF A;  2V5H A;  4NDP A;  2BTY A;  3QVF A;  1OHA A;  2J0X A;  3C20 A;  3D40 A;  3C1N A;  3KZF A;  4NDQ A;  2E9Y A;  2WE4 A;  3S6G A;  4KZT A;  4AXS A;  3EK6 A;  2W21 A;  4I49 A;  2J4J A;  3EK5 A;  2VA1 A;  2JI5 A;  2J5V A;  3K4O A;  3D41 A;  2BRI A;  3L76 A;  1Z9D A;  3TVI A;  1OH9 A;  1OHB A;  2X2W A;  2AP9 A;  2BND A;  3K56 A;  2V4Y A;  3D2M A;  4A7X A;  3S6H A;  2AKO A;  2WE5 A;  3AAW A;  2J4K A;  3QUR A;  4AB7 A;  3D2P A;  4NDO B;  2HMF A;  2A1F A;  3QVH A;  3ZZH A;  3LL9 A;  3LL5 A;  1E19 A;  3C1M A;  3AB4 A;  3WWN A;  4NDR B;  2JJX A;  3ZZG A;  4USJ A;  3K52 A;  4NDP B;  3ZZI A;  3L86 A;  2J5T A;  1GSJ A;  4A7W A;  4NDR A;  3B8G A;  3WWM A;  2WXB A;  4F6T B;  2RD5 A;  2BNF A;  2JJ4 A;  3S6K A;  3K4Y A;  4NDO A;  3ZZF A;  2CDQ A;  2BMU A;  2OGX B;  3U6U A;  3LKK A;  3NWY A;  4Q1T A;  2BRX A;  4F6T A;  3QUO A;  2BNE A;  2J4L A;  3QUN A;  2J0W A;  1B7B A;  4OLC A;  4JZ8 A;  4JZ9 A;  1GS5 A;  2R8V A;  4JZ7 A;  4NDQ B;  2OGX A;  3AB2 A; 
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