4JZ9A

Carbamate kinase from giardia lamblia bound to citric acid
Total Genus 107
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
107
sequence length
316
structure length
316
Chain Sequence
MSAGKTVVIALGGNAMLQAKEKGDYDTQRKNVEIAASEIYKIHKAGYKVVLTSGNGPQVGAIKLQNQAAAGVSPEMPLHVCGAMSQGFIGYMMSQAMDNVFCANNEPANCVTCVTQTLVDPKDQAFTNPTKPVGRFYTEQEAKDLMAANPGKILREDAGRGWRVVVPSPRPLEIVEYGVIKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNACINYKKPDERKLEEIKLSEILALEKDGHFAAGSMGPKVRAAIEFTQATGKMSIITSLSTAVDALNGKCGTRIIKD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Carbamate kinase
publication title Crystal Structures of Carbamate Kinase from Giardia lamblia Bound with Citric Acid and AMP-PNP.
pubmed doi rcsb
source organism Giardia lamblia
molecule tags Transferase
total genus 107
structure length 316
sequence length 316
chains with identical sequence B, C, D
ec nomenclature ec 2.7.2.2: Carbamate kinase.
pdb deposition date 2013-04-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 4jz9A00
3K52A 3S6HA 2W21A 3K4YA 3EK5A 4NDQB 3WWNA 4JZ9A 2OGXA 4I49A 2WE4A 2J4LA 4Q1TA 4F6TB 2BTYA 4NDPB 2CDQA 3QUOA 1GS5A 3C1NA 3U6UA 4KZTA 2E9YA 3AB2A 3AB4A 3LL9A 3NWYA 4NDQA 2J4KA 2JJ4A 2J5VA 3TVIA 2AKOA 1Z9DA 2BRXA 4F6TA 4NDPA 1GSJA 3KZFA 2IJ9A 3ZZIA 1B7BA 3EK6A 2WXBA 3K56A 1YBDA 2V4YA 4JZ7A 3D40A 2BNDA 3WWMA 2BUFA 3QVHA 1E19A 3D2PA 4NDOA 2R8VA 4NDRB 3L86A 2V5HA 2VA1A 4NDOB 2J0XA 2WE5A 2HMFA 3K4OA 3B8GA 2JI5A 3S6GA 3QUNA 2J0WA 4AXSA 4OLCA 3C20A 2JJXA 2BNFA 2AP9A 3QURA 3C1MA 4NDRA 4JZ8A 2R98A 3LKKA 3D2MA 3AAWA 3S6KA 2BMUA 2BNEA 3QVFA 1OHBA 2J5TA 4A7XA 2RD5A 3T7BA 3L76A 2X2WA 2BRIA 2OGXB 3ZZFA 1OHAA 4A7WA 3ZZGA 2A1FA 2J4JA 3ZZHA 1OH9A 3LL5A 4AB7A 3D41A 4USJA
chains in the Genus database with same CATH superfamily
3K52A 3S6HA 2W21A 3K4YA 3EK5A 4NDQB 3WWNA 4JZ9A 2OGXA 4I49A 2WE4A 2J4LA 4Q1TA 4F6TB 2BTYA 4NDPB 2CDQA 3QUOA 1GS5A 3C1NA 3U6UA 4KZTA 2E9YA 3AB2A 3AB4A 3LL9A 3NWYA 4NDQA 2J4KA 2JJ4A 2J5VA 3TVIA 2AKOA 1Z9DA 2BRXA 4F6TA 4NDPA 1GSJA 3KZFA 2IJ9A 3ZZIA 1B7BA 3EK6A 2WXBA 3K56A 1YBDA 2V4YA 4JZ7A 3D40A 2BNDA 3WWMA 2BUFA 3QVHA 1E19A 3D2PA 4NDOA 2R8VA 4NDRB 3L86A 2V5HA 2VA1A 4NDOB 2J0XA 2WE5A 2HMFA 3K4OA 3B8GA 2JI5A 3S6GA 3QUNA 2J0WA 4AXSA 4OLCA 3C20A 2JJXA 2BNFA 2AP9A 3QURA 3C1MA 4NDRA 4JZ8A 2R98A 3LKKA 3D2MA 3AAWA 3S6KA 2BMUA 2BNEA 3QVFA 1OHBA 2J5TA 4A7XA 2RD5A 3T7BA 3L76A 2X2WA 2BRIA 2OGXB 3ZZFA 1OHAA 4A7WA 3ZZGA 2A1FA 2J4JA 3ZZHA 1OH9A 3LL5A 4AB7A 3D41A 4USJA
chains in the Genus database with same CATH topology
3K52A 3S6HA 2W21A 3K4YA 3EK5A 4NDQB 3WWNA 4JZ9A 2OGXA 4I49A 2WE4A 2J4LA 4Q1TA 4F6TB 2BTYA 4NDPB 2CDQA 3QUOA 1GS5A 3C1NA 3U6UA 4KZTA 2E9YA 3AB2A 3AB4A 3LL9A 3NWYA 4NDQA 2J4KA 2JJ4A 2J5VA 3TVIA 2AKOA 1Z9DA 2BRXA 4F6TA 4NDPA 1GSJA 3KZFA 2IJ9A 3ZZIA 1B7BA 3EK6A 2WXBA 3K56A 1YBDA 2V4YA 4JZ7A 3D40A 2BNDA 3WWMA 2BUFA 3QVHA 1E19A 3D2PA 4NDOA 2R8VA 4NDRB 3L86A 2V5HA 2VA1A 4NDOB 2J0XA 2WE5A 2HMFA 3K4OA 3B8GA 2JI5A 3S6GA 3QUNA 2J0WA 4AXSA 4OLCA 3C20A 2JJXA 2BNFA 2AP9A 3QURA 3C1MA 4NDRA 4JZ8A 2R98A 3LKKA 3D2MA 3AAWA 3S6KA 2BMUA 2BNEA 3QVFA 1OHBA 2J5TA 4A7XA 2RD5A 3T7BA 3L76A 2X2WA 2BRIA 2OGXB 3ZZFA 1OHAA 4A7WA 3ZZGA 2A1FA 2J4JA 3ZZHA 1OH9A 3LL5A 4AB7A 3D41A 4USJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3K52 A;  3S6H A;  2W21 A;  3K4Y A;  3EK5 A;  4NDQ B;  3WWN A;  4JZ9 A;  2OGX A;  4I49 A;  2WE4 A;  2J4L A;  4Q1T A;  4F6T B;  2BTY A;  4NDP B;  2CDQ A;  3QUO A;  1GS5 A;  3C1N A;  3U6U A;  4KZT A;  2E9Y A;  3AB2 A;  3AB4 A;  3LL9 A;  3NWY A;  4NDQ A;  2J4K A;  2JJ4 A;  2J5V A;  3TVI A;  2AKO A;  1Z9D A;  2BRX A;  4F6T A;  4NDP A;  1GSJ A;  3KZF A;  2IJ9 A;  3ZZI A;  1B7B A;  3EK6 A;  2WXB A;  3K56 A;  1YBD A;  2V4Y A;  4JZ7 A;  3D40 A;  2BND A;  3WWM A;  2BUF A;  3QVH A;  1E19 A;  3D2P A;  4NDO A;  2R8V A;  4NDR B;  3L86 A;  2V5H A;  2VA1 A;  4NDO B;  2J0X A;  2WE5 A;  2HMF A;  3K4O A;  3B8G A;  2JI5 A;  3S6G A;  3QUN A;  2J0W A;  4AXS A;  4OLC A;  3C20 A;  2JJX A;  2BNF A;  2AP9 A;  3QUR A;  3C1M A;  4NDR A;  4JZ8 A;  2R98 A;  3LKK A;  3D2M A;  3AAW A;  3S6K A;  2BMU A;  2BNE A;  3QVF A;  1OHB A;  2J5T A;  4A7X A;  2RD5 A;  3T7B A;  3L76 A;  2X2W A;  2BRI A;  2OGX B;  3ZZF A;  1OHA A;  4A7W A;  3ZZG A;  2A1F A;  2J4J A;  3ZZH A;  1OH9 A;  3LL5 A;  4AB7 A;  3D41 A;  4USJ A; 
#chains in the Genus database with same CATH topology
 3K52 A;  3S6H A;  2W21 A;  3K4Y A;  3EK5 A;  4NDQ B;  3WWN A;  4JZ9 A;  2OGX A;  4I49 A;  2WE4 A;  2J4L A;  4Q1T A;  4F6T B;  2BTY A;  4NDP B;  2CDQ A;  3QUO A;  1GS5 A;  3C1N A;  3U6U A;  4KZT A;  2E9Y A;  3AB2 A;  3AB4 A;  3LL9 A;  3NWY A;  4NDQ A;  2J4K A;  2JJ4 A;  2J5V A;  3TVI A;  2AKO A;  1Z9D A;  2BRX A;  4F6T A;  4NDP A;  1GSJ A;  3KZF A;  2IJ9 A;  3ZZI A;  1B7B A;  3EK6 A;  2WXB A;  3K56 A;  1YBD A;  2V4Y A;  4JZ7 A;  3D40 A;  2BND A;  3WWM A;  2BUF A;  3QVH A;  1E19 A;  3D2P A;  4NDO A;  2R8V A;  4NDR B;  3L86 A;  2V5H A;  2VA1 A;  4NDO B;  2J0X A;  2WE5 A;  2HMF A;  3K4O A;  3B8G A;  2JI5 A;  3S6G A;  3QUN A;  2J0W A;  4AXS A;  4OLC A;  3C20 A;  2JJX A;  2BNF A;  2AP9 A;  3QUR A;  3C1M A;  4NDR A;  4JZ8 A;  2R98 A;  3LKK A;  3D2M A;  3AAW A;  3S6K A;  2BMU A;  2BNE A;  3QVF A;  1OHB A;  2J5T A;  4A7X A;  2RD5 A;  3T7B A;  3L76 A;  2X2W A;  2BRI A;  2OGX B;  3ZZF A;  1OHA A;  4A7W A;  3ZZG A;  2A1F A;  2J4J A;  3ZZH A;  1OH9 A;  3LL5 A;  4AB7 A;  3D41 A;  4USJ A; 
#chains in the Genus database with same CATH homology
 3K52 A;  3S6H A;  2W21 A;  3K4Y A;  3EK5 A;  4NDQ B;  3WWN A;  4JZ9 A;  2OGX A;  4I49 A;  2WE4 A;  2J4L A;  4Q1T A;  4F6T B;  2BTY A;  4NDP B;  2CDQ A;  3QUO A;  1GS5 A;  3C1N A;  3U6U A;  4KZT A;  2E9Y A;  3AB2 A;  3AB4 A;  3LL9 A;  3NWY A;  4NDQ A;  2J4K A;  2JJ4 A;  2J5V A;  3TVI A;  2AKO A;  1Z9D A;  2BRX A;  4F6T A;  4NDP A;  1GSJ A;  3KZF A;  2IJ9 A;  3ZZI A;  1B7B A;  3EK6 A;  2WXB A;  3K56 A;  1YBD A;  2V4Y A;  4JZ7 A;  3D40 A;  2BND A;  3WWM A;  2BUF A;  3QVH A;  1E19 A;  3D2P A;  4NDO A;  2R8V A;  4NDR B;  3L86 A;  2V5H A;  2VA1 A;  4NDO B;  2J0X A;  2WE5 A;  2HMF A;  3K4O A;  3B8G A;  2JI5 A;  3S6G A;  3QUN A;  2J0W A;  4AXS A;  4OLC A;  3C20 A;  2JJX A;  2BNF A;  2AP9 A;  3QUR A;  3C1M A;  4NDR A;  4JZ8 A;  2R98 A;  3LKK A;  3D2M A;  3AAW A;  3S6K A;  2BMU A;  2BNE A;  3QVF A;  1OHB A;  2J5T A;  4A7X A;  2RD5 A;  3T7B A;  3L76 A;  2X2W A;  2BRI A;  2OGX B;  3ZZF A;  1OHA A;  4A7W A;  3ZZG A;  2A1F A;  2J4J A;  3ZZH A;  1OH9 A;  3LL5 A;  4AB7 A;  3D41 A;  4USJ A; 
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