4JZ9A

Carbamate kinase from giardia lamblia bound to citric acid
Total Genus 107
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
107
sequence length
316
structure length
316
Chain Sequence
MSAGKTVVIALGGNAMLQAKEKGDYDTQRKNVEIAASEIYKIHKAGYKVVLTSGNGPQVGAIKLQNQAAAGVSPEMPLHVCGAMSQGFIGYMMSQAMDNVFCANNEPANCVTCVTQTLVDPKDQAFTNPTKPVGRFYTEQEAKDLMAANPGKILREDAGRGWRVVVPSPRPLEIVEYGVIKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNACINYKKPDERKLEEIKLSEILALEKDGHFAAGSMGPKVRAAIEFTQATGKMSIITSLSTAVDALNGKCGTRIIKD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Carbamate kinase
publication title Crystal Structures of Carbamate Kinase from Giardia lamblia Bound with Citric Acid and AMP-PNP.
pubmed doi rcsb
source organism Giardia lamblia
molecule tags Transferase
total genus 107
structure length 316
sequence length 316
chains with identical sequence B, C, D
ec nomenclature ec 2.7.2.2: Carbamate kinase.
pdb deposition date 2013-04-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 4jz9A00
1E19A 2OGXA 3WWNA 4NDOA 4JZ9A 3QVHA 2AP9A 2BNEA 1Z9DA 2BMUA 2J5TA 3ZZFA 3ZZIA 3QURA 4NDQA 2RD5A 3D40A 3QUNA 3LL9A 1OHBA 3L86A 2WE4A 3T7BA 2IJ9A 2WE5A 2HMFA 1GS5A 3AB2A 4A7WA 3LL5A 2BRIA 2BTYA 2R8VA 2BRXA 4Q1TA 3KZFA 3S6HA 3AAWA 3C1MA 2BNFA 4JZ7A 3S6GA 4AB7A 2X2WA 3S6KA 3WWMA 3ZZGA 1GSJA 3TVIA 2JJXA 4JZ8A 3K4OA 2J4KA 4F6TB 4I49A 4A7XA 3NWYA 3ZZHA 3K52A 3K4YA 1OHAA 2OGXB 2AKOA 2CDQA 2J0WA 4NDPB 2J4JA 2WXBA 2A1FA 3AB4A 1B7BA 3B8GA 3QVFA 3C1NA 2BNDA 4NDRB 4OLCA 1OH9A 2E9YA 2J5VA 3C20A 2J0XA 2V4YA 4KZTA 3D2PA 2W21A 4AXSA 2JJ4A 2J4LA 2BUFA 4NDPA 3QUOA 1YBDA 2V5HA 3D2MA 4NDOB 2R98A 3LKKA 2VA1A 3EK6A 4NDRA 3L76A 2JI5A 3EK5A 3K56A 3D41A 4NDQB 4F6TA 3U6UA 4USJA
chains in the Genus database with same CATH superfamily
1E19A 2OGXA 3WWNA 4NDOA 4JZ9A 3QVHA 2AP9A 2BNEA 1Z9DA 2BMUA 2J5TA 3ZZFA 3ZZIA 3QURA 4NDQA 2RD5A 3D40A 3QUNA 3LL9A 1OHBA 3L86A 2WE4A 3T7BA 2IJ9A 2WE5A 2HMFA 1GS5A 3AB2A 4A7WA 3LL5A 2BRIA 2BTYA 2R8VA 2BRXA 4Q1TA 3KZFA 3S6HA 3AAWA 3C1MA 2BNFA 4JZ7A 3S6GA 4AB7A 2X2WA 3S6KA 3WWMA 3ZZGA 1GSJA 3TVIA 2JJXA 4JZ8A 3K4OA 2J4KA 4F6TB 4I49A 4A7XA 3NWYA 3ZZHA 3K52A 3K4YA 1OHAA 2OGXB 2AKOA 2CDQA 2J0WA 4NDPB 2J4JA 2WXBA 2A1FA 3AB4A 1B7BA 3B8GA 3QVFA 3C1NA 2BNDA 4NDRB 4OLCA 1OH9A 2E9YA 2J5VA 3C20A 2J0XA 2V4YA 4KZTA 3D2PA 2W21A 4AXSA 2JJ4A 2J4LA 2BUFA 4NDPA 3QUOA 1YBDA 2V5HA 3D2MA 4NDOB 2R98A 3LKKA 2VA1A 3EK6A 4NDRA 3L76A 2JI5A 3EK5A 3K56A 3D41A 4NDQB 4F6TA 3U6UA 4USJA
chains in the Genus database with same CATH topology
1E19A 2OGXA 3WWNA 4NDOA 4JZ9A 3QVHA 2AP9A 2BNEA 1Z9DA 2BMUA 2J5TA 3ZZFA 3ZZIA 3QURA 4NDQA 2RD5A 3D40A 3QUNA 3LL9A 1OHBA 3L86A 2WE4A 3T7BA 2IJ9A 2WE5A 2HMFA 1GS5A 3AB2A 4A7WA 3LL5A 2BRIA 2BTYA 2R8VA 2BRXA 4Q1TA 3KZFA 3S6HA 3AAWA 3C1MA 2BNFA 4JZ7A 3S6GA 4AB7A 2X2WA 3S6KA 3WWMA 3ZZGA 1GSJA 3TVIA 2JJXA 4JZ8A 3K4OA 2J4KA 4F6TB 4I49A 4A7XA 3NWYA 3ZZHA 3K52A 3K4YA 1OHAA 2OGXB 2AKOA 2CDQA 2J0WA 4NDPB 2J4JA 2WXBA 2A1FA 3AB4A 1B7BA 3B8GA 3QVFA 3C1NA 2BNDA 4NDRB 4OLCA 1OH9A 2E9YA 2J5VA 3C20A 2J0XA 2V4YA 4KZTA 3D2PA 2W21A 4AXSA 2JJ4A 2J4LA 2BUFA 4NDPA 3QUOA 1YBDA 2V5HA 3D2MA 4NDOB 2R98A 3LKKA 2VA1A 3EK6A 4NDRA 3L76A 2JI5A 3EK5A 3K56A 3D41A 4NDQB 4F6TA 3U6UA 4USJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1E19 A;  2OGX A;  3WWN A;  4NDO A;  4JZ9 A;  3QVH A;  2AP9 A;  2BNE A;  1Z9D A;  2BMU A;  2J5T A;  3ZZF A;  3ZZI A;  3QUR A;  4NDQ A;  2RD5 A;  3D40 A;  3QUN A;  3LL9 A;  1OHB A;  3L86 A;  2WE4 A;  3T7B A;  2IJ9 A;  2WE5 A;  2HMF A;  1GS5 A;  3AB2 A;  4A7W A;  3LL5 A;  2BRI A;  2BTY A;  2R8V A;  2BRX A;  4Q1T A;  3KZF A;  3S6H A;  3AAW A;  3C1M A;  2BNF A;  4JZ7 A;  3S6G A;  4AB7 A;  2X2W A;  3S6K A;  3WWM A;  3ZZG A;  1GSJ A;  3TVI A;  2JJX A;  4JZ8 A;  3K4O A;  2J4K A;  4F6T B;  4I49 A;  4A7X A;  3NWY A;  3ZZH A;  3K52 A;  3K4Y A;  1OHA A;  2OGX B;  2AKO A;  2CDQ A;  2J0W A;  4NDP B;  2J4J A;  2WXB A;  2A1F A;  3AB4 A;  1B7B A;  3B8G A;  3QVF A;  3C1N A;  2BND A;  4NDR B;  4OLC A;  1OH9 A;  2E9Y A;  2J5V A;  3C20 A;  2J0X A;  2V4Y A;  4KZT A;  3D2P A;  2W21 A;  4AXS A;  2JJ4 A;  2J4L A;  2BUF A;  4NDP A;  3QUO A;  1YBD A;  2V5H A;  3D2M A;  4NDO B;  2R98 A;  3LKK A;  2VA1 A;  3EK6 A;  4NDR A;  3L76 A;  2JI5 A;  3EK5 A;  3K56 A;  3D41 A;  4NDQ B;  4F6T A;  3U6U A;  4USJ A; 
#chains in the Genus database with same CATH topology
 1E19 A;  2OGX A;  3WWN A;  4NDO A;  4JZ9 A;  3QVH A;  2AP9 A;  2BNE A;  1Z9D A;  2BMU A;  2J5T A;  3ZZF A;  3ZZI A;  3QUR A;  4NDQ A;  2RD5 A;  3D40 A;  3QUN A;  3LL9 A;  1OHB A;  3L86 A;  2WE4 A;  3T7B A;  2IJ9 A;  2WE5 A;  2HMF A;  1GS5 A;  3AB2 A;  4A7W A;  3LL5 A;  2BRI A;  2BTY A;  2R8V A;  2BRX A;  4Q1T A;  3KZF A;  3S6H A;  3AAW A;  3C1M A;  2BNF A;  4JZ7 A;  3S6G A;  4AB7 A;  2X2W A;  3S6K A;  3WWM A;  3ZZG A;  1GSJ A;  3TVI A;  2JJX A;  4JZ8 A;  3K4O A;  2J4K A;  4F6T B;  4I49 A;  4A7X A;  3NWY A;  3ZZH A;  3K52 A;  3K4Y A;  1OHA A;  2OGX B;  2AKO A;  2CDQ A;  2J0W A;  4NDP B;  2J4J A;  2WXB A;  2A1F A;  3AB4 A;  1B7B A;  3B8G A;  3QVF A;  3C1N A;  2BND A;  4NDR B;  4OLC A;  1OH9 A;  2E9Y A;  2J5V A;  3C20 A;  2J0X A;  2V4Y A;  4KZT A;  3D2P A;  2W21 A;  4AXS A;  2JJ4 A;  2J4L A;  2BUF A;  4NDP A;  3QUO A;  1YBD A;  2V5H A;  3D2M A;  4NDO B;  2R98 A;  3LKK A;  2VA1 A;  3EK6 A;  4NDR A;  3L76 A;  2JI5 A;  3EK5 A;  3K56 A;  3D41 A;  4NDQ B;  4F6T A;  3U6U A;  4USJ A; 
#chains in the Genus database with same CATH homology
 1E19 A;  2OGX A;  3WWN A;  4NDO A;  4JZ9 A;  3QVH A;  2AP9 A;  2BNE A;  1Z9D A;  2BMU A;  2J5T A;  3ZZF A;  3ZZI A;  3QUR A;  4NDQ A;  2RD5 A;  3D40 A;  3QUN A;  3LL9 A;  1OHB A;  3L86 A;  2WE4 A;  3T7B A;  2IJ9 A;  2WE5 A;  2HMF A;  1GS5 A;  3AB2 A;  4A7W A;  3LL5 A;  2BRI A;  2BTY A;  2R8V A;  2BRX A;  4Q1T A;  3KZF A;  3S6H A;  3AAW A;  3C1M A;  2BNF A;  4JZ7 A;  3S6G A;  4AB7 A;  2X2W A;  3S6K A;  3WWM A;  3ZZG A;  1GSJ A;  3TVI A;  2JJX A;  4JZ8 A;  3K4O A;  2J4K A;  4F6T B;  4I49 A;  4A7X A;  3NWY A;  3ZZH A;  3K52 A;  3K4Y A;  1OHA A;  2OGX B;  2AKO A;  2CDQ A;  2J0W A;  4NDP B;  2J4J A;  2WXB A;  2A1F A;  3AB4 A;  1B7B A;  3B8G A;  3QVF A;  3C1N A;  2BND A;  4NDR B;  4OLC A;  1OH9 A;  2E9Y A;  2J5V A;  3C20 A;  2J0X A;  2V4Y A;  4KZT A;  3D2P A;  2W21 A;  4AXS A;  2JJ4 A;  2J4L A;  2BUF A;  4NDP A;  3QUO A;  1YBD A;  2V5H A;  3D2M A;  4NDO B;  2R98 A;  3LKK A;  2VA1 A;  3EK6 A;  4NDR A;  3L76 A;  2JI5 A;  3EK5 A;  3K56 A;  3D41 A;  4NDQ B;  4F6T A;  3U6U A;  4USJ A; 
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