4K2GA

Structure of pseudomonas aeruginosa pvdq bound to brd-a33442372
Total Genus 55
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
164
structure length
164
Chain Sequence
TGLAADIRWTAYGVPHIRAKDERGLGYGIGYAYARDNACLLAEEIVTARGERARYFGSEGKSSAELDNLPSDIFYAWLNQPEALQAFWQAQTPAVRQLLEGYAAGFNRFLREADGKTTSCLGQPWLRAIATDDLLRLTRRLLVEGGVGQFADALVAAAPPGAEK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Identification of Inhibitors of PvdQ, an Enzyme Involved in the Synthesis of the Siderophore Pyoverdine.
pubmed doi rcsb
molecule tags Hydrolase/hydrolase inhibitor
source organism Pseudomonas aeruginosa
molecule keywords Acyl-homoserine lactone acylase PvdQ
total genus 55
structure length 164
sequence length 164
ec nomenclature ec 3.5.1.97: Acyl-homoserine-lactone acylase.
pdb deposition date 2013-04-09
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.439.10 Mainly Alpha Orthogonal Bundle Penicillin Amidohydrolase; domain 1 Penicillin Amidohydrolase, domain 1 4k2gA00
2WYBA 1AI7A 1K7DA 1AI5A 2AE5A 1KECA 1FM2A 2WYEA 3K3WA 3L91A 1AJNA 1AJQA 3SRBA 1JW0A 1PNMA 4PELA 1GK9A 1GK0A 1JVZA 1AJPA 1PNLA 2AE3A 2AE4A 4K2FA 4YFBA 1PNKA 3SRAA 3SRCA 4BTHA 4WKUA 4HSRA 1JX9A 4HSTA 4YFAA 1GK1A 1FXVA 2WYDA 1GHDA 1K5SA 4WKSA 1KEHA 4WKTA 3ML0A 4WKVA 1GKFA 4YF9A 4E55A 1AI6A 2WYCA 4E57A 1K5QA 3L94A 4M1JA 4K2GA 1OR0A 1CP9A 1GM7A 1FXHA 1GM8A 1AI4A 2ADVA 3JTRA 3S8RA 4E56A 1H2GA 4PEMA 1GM9A 1E3AA 3JTQA
chains in the Genus database with same CATH superfamily
2WYBA 1AI7A 3FGRA 1K7DA 1AI5A 2AE5A 1KECA 1FM2A 2WYEA 3K3WA 3L91A 1AJNA 1AJQA 3SRBA 1JW0A 1PNMA 4PELA 1GK9A 1GK0A 1JVZA 1AJPA 1PNLA 2AE3A 2AE4A 4K2FA 4YFBA 1PNKA 3SRAA 3SRCA 4BTHA 4WKUA 4HSRA 4BWCA 1JX9A 4HSTA 4YFAA 1GK1A 1FXVA 2WYDA 1GHDA 1K5SA 4WKSA 1KEHA 4WKTA 3ML0A 4WKVA 1GKFA 3FGTA 4YF9A 4E55A 1AI6A 2WYCA 4E57A 1K5QA 3L94A 4M1JA 4K2GA 1OR0A 1CP9A 1GM7A 1FXHA 1GM8A 1AI4A 2ADVA 3JTRA 3S8RA 4E56A 1H2GA 4PEMA 1GM9A 1E3AA 3JTQA
chains in the Genus database with same CATH topology
2WYBA 1AI7A 1K7DA 1AI5A 2AE5A 1KECA 1FM2A 2WYEA 3K3WA 3L91A 1AJNA 1AJQA 3SRBA 1JW0A 1PNMA 4PELA 1GK9A 1GK0A 1JVZA 1AJPA 1PNLA 2AE3A 2AE4A 4K2FA 4YFBA 1PNKA 3SRAA 3SRCA 4BTHA 4WKUA 4HSRA 1JX9A 4HSTA 4YFAA 1GK1A 1FXVA 2WYDA 1GHDA 1K5SA 4WKSA 1KEHA 4WKTA 3ML0A 4WKVA 1GKFA 4YF9A 4E55A 1AI6A 2WYCA 4E57A 1K5QA 3L94A 4M1JA 4K2GA 1OR0A 1CP9A 1GM7A 1FXHA 1GM8A 1AI4A 2ADVA 3JTRA 3S8RA 4E56A 1H2GA 4PEMA 1GM9A 1E3AA 3JTQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WYB A;  1AI7 A;  1K7D A;  1AI5 A;  2AE5 A;  1KEC A;  1FM2 A;  2WYE A;  3K3W A;  3L91 A;  1AJN A;  1AJQ A;  3SRB A;  1JW0 A;  1PNM A;  4PEL A;  1GK9 A;  1GK0 A;  1JVZ A;  1AJP A;  1PNL A;  2AE3 A;  2AE4 A;  4K2F A;  4YFB A;  1PNK A;  3SRA A;  3SRC A;  4BTH A;  4WKU A;  4HSR A;  1JX9 A;  4HST A;  4YFA A;  1GK1 A;  1FXV A;  2WYD A;  1GHD A;  1K5S A;  4WKS A;  1KEH A;  4WKT A;  3ML0 A;  4WKV A;  1GKF A;  4YF9 A;  4E55 A;  1AI6 A;  2WYC A;  4E57 A;  1K5Q A;  3L94 A;  4M1J A;  4K2G A;  1OR0 A;  1CP9 A;  1GM7 A;  1FXH A;  1GM8 A;  1AI4 A;  2ADV A;  3JTR A;  3S8R A;  4E56 A;  1H2G A;  4PEM A;  1GM9 A;  1E3A A;  3JTQ A; 
#chains in the Genus database with same CATH topology
 2WYB A;  1AI7 A;  3FGR A;  1K7D A;  1AI5 A;  2AE5 A;  1KEC A;  1FM2 A;  2WYE A;  3K3W A;  3L91 A;  1AJN A;  1AJQ A;  3SRB A;  1JW0 A;  1PNM A;  4PEL A;  1GK9 A;  1GK0 A;  1JVZ A;  1AJP A;  1PNL A;  2AE3 A;  2AE4 A;  4K2F A;  4YFB A;  1PNK A;  3SRA A;  3SRC A;  4BTH A;  4WKU A;  4HSR A;  4BWC A;  1JX9 A;  4HST A;  4YFA A;  1GK1 A;  1FXV A;  2WYD A;  1GHD A;  1K5S A;  4WKS A;  1KEH A;  4WKT A;  3ML0 A;  4WKV A;  1GKF A;  3FGT A;  4YF9 A;  4E55 A;  1AI6 A;  2WYC A;  4E57 A;  1K5Q A;  3L94 A;  4M1J A;  4K2G A;  1OR0 A;  1CP9 A;  1GM7 A;  1FXH A;  1GM8 A;  1AI4 A;  2ADV A;  3JTR A;  3S8R A;  4E56 A;  1H2G A;  4PEM A;  1GM9 A;  1E3A A;  3JTQ A; 
#chains in the Genus database with same CATH homology
 2WYB A;  1AI7 A;  1K7D A;  1AI5 A;  2AE5 A;  1KEC A;  1FM2 A;  2WYE A;  3K3W A;  3L91 A;  1AJN A;  1AJQ A;  3SRB A;  1JW0 A;  1PNM A;  4PEL A;  1GK9 A;  1GK0 A;  1JVZ A;  1AJP A;  1PNL A;  2AE3 A;  2AE4 A;  4K2F A;  4YFB A;  1PNK A;  3SRA A;  3SRC A;  4BTH A;  4WKU A;  4HSR A;  1JX9 A;  4HST A;  4YFA A;  1GK1 A;  1FXV A;  2WYD A;  1GHD A;  1K5S A;  4WKS A;  1KEH A;  4WKT A;  3ML0 A;  4WKV A;  1GKF A;  4YF9 A;  4E55 A;  1AI6 A;  2WYC A;  4E57 A;  1K5Q A;  3L94 A;  4M1J A;  4K2G A;  1OR0 A;  1CP9 A;  1GM7 A;  1FXH A;  1GM8 A;  1AI4 A;  2ADV A;  3JTR A;  3S8R A;  4E56 A;  1H2G A;  4PEM A;  1GM9 A;  1E3A A;  3JTQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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