4K3LA

E. coli sliding clamp in complex with aclf dipeptide
Total Genus 88
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
88
sequence length
365
structure length
353
Chain Sequence
MKFTVEREHLLKPLQQVSPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYVVMPMR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords DNA polymerase III subunit beta
publication title Structural and Thermodynamic Dissection of Linear Motif Recognition by the E. coli Sliding Clamp
pubmed doi rcsb
source organism Escherichia coli
total genus 88
structure length 353
sequence length 365
chains with identical sequence B
ec nomenclature ec 2.7.7.7: DNA-directed DNA polymerase.
pdb deposition date 2013-04-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00712 DNA_pol3_beta DNA polymerase III beta subunit, N-terminal domain
A PF02767 DNA_pol3_beta_2 DNA polymerase III beta subunit, central domain
A PF02768 DNA_pol3_beta_3 DNA polymerase III beta subunit, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.150.10 Alpha Beta Roll DNA Polymerase III; Chain A, domain 2 DNA Polymerase III, subunit A, domain 2 4k3lA02
3.10.150.10 Alpha Beta Roll DNA Polymerase III; Chain A, domain 2 DNA Polymerase III, subunit A, domain 2 4k3lA03
3.10.150.10 Alpha Beta Roll DNA Polymerase III; Chain A, domain 2 DNA Polymerase III, subunit A, domain 2 4k3lA01
3BEPA 4K3MA 4K3QA 1MMIA 4TR7A 3Q4LA 4K3LA 3Q4JA 4N94A 4TRTA 4K3KA 4K3OA 4MJPA 2XURA 4PNVA 1JQLA 4N97A 3RB9A 3D1EA 4K3PA 5FVEA 4PNUA 4N99A 1OK7A 4K74A 4K3SA 3QSBB 5FRQA 4RKIA 3T0PA 4TR8A 3L10A 4TR6A 3PGEB 3L0WA 3L0XA 4MJRA 4N98A 5AGUA 4N95A 1JQJA 4K3RA 4OVHA 4N96A 1VPKA 5AGVA 5AH4A 4OVFA 4PNWA 4N9AA 5AH2A 4TSZA 1UNNA 3P16A 2AVTA 3D1FA 3PWEA 4MJQA 3QSBA 4S3IA 2POLA 3F1VA 3D1GA 3Q4KA 2AWAA 4OVGA
chains in the Genus database with same CATH superfamily
3BEPA 4K3MA 4K3QA 1MMIA 4TR7A 3L0WB 3Q4LA 4K3LA 3L10B 3Q4JA 4N94A 3L0XB 3Q4KA 4TRTA 4K3KA 4K3OA 4MJPA 2XURA 4PNVA 1JQLA 4N97A 3RB9A 3D1EA 4K3PA 5FVEA 4PNUA 4N99A 1OK7A 4K74A 4K3SA 3QSBB 5FRQA 4RKIA 3T0PA 4TR8A 3L10A 4TR6A 3PGEB 3L0WA 3L0XA 4MJRA 4N98A 5AGUA 4N95A 1JQJA 4K3RA 4OVHA 4N96A 1VPKA 5AGVA 5AH4A 4OVFA 4PNWA 4N9AA 5AH2A 4TSZA 1UNNA 3P16A 2AVTA 3D1FA 3PWEA 4MJQA 3QSBA 4S3IA 2POLA 3F1VA 3D1GA 3PGEA 2AWAA 4OVGA
chains in the Genus database with same CATH topology
3BEPA 4K3MA 4K3QA 1MMIA 4TR7A 3Q4LA 4K3LA 3Q4JA 4N94A 4TRTA 4K3KA 4K3OA 4MJPA 2XURA 4PNVA 1JQLA 4N97A 3RB9A 3D1EA 4K3PA 5FVEA 4PNUA 4N99A 1OK7A 4K74A 4K3SA 3QSBB 5FRQA 4RKIA 3T0PA 4TR8A 3L10A 4TR6A 3PGEB 3L0WA 3L0XA 4MJRA 4N98A 5AGUA 4N95A 1JQJA 4K3RA 4OVHA 4N96A 1VPKA 5AGVA 5AH4A 4OVFA 4PNWA 4N9AA 5AH2A 4TSZA 1UNNA 3P16A 2AVTA 3D1FA 3PWEA 4MJQA 3QSBA 4S3IA 2POLA 3F1VA 3D1GA 3Q4KA 2AWAA 4OVGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BEP A;  4K3M A;  4K3Q A;  1MMI A;  4TR7 A;  3Q4L A;  4K3L A;  3Q4J A;  4N94 A;  4TRT A;  4K3K A;  4K3O A;  4MJP A;  2XUR A;  4PNV A;  1JQL A;  4N97 A;  3RB9 A;  3D1E A;  4K3P A;  5FVE A;  4PNU A;  4N99 A;  1OK7 A;  4K74 A;  4K3S A;  3QSB B;  5FRQ A;  4RKI A;  3T0P A;  4TR8 A;  3L10 A;  4TR6 A;  3PGE B;  3L0W A;  3L0X A;  4MJR A;  4N98 A;  5AGU A;  4N95 A;  1JQJ A;  4K3R A;  4OVH A;  4N96 A;  1VPK A;  5AGV A;  5AH4 A;  4OVF A;  4PNW A;  4N9A A;  5AH2 A;  4TSZ A;  1UNN A;  3P16 A;  2AVT A;  3D1F A;  3PWE A;  4MJQ A;  3QSB A;  4S3I A;  2POL A;  3F1V A;  3D1G A;  3Q4K A;  2AWA A;  4OVG A; 
#chains in the Genus database with same CATH topology
 3BEP A;  4K3M A;  4K3Q A;  1MMI A;  4TR7 A;  3L0W B;  3Q4L A;  4K3L A;  3L10 B;  3Q4J A;  4N94 A;  3L0X B;  3Q4K A;  4TRT A;  4K3K A;  4K3O A;  4MJP A;  2XUR A;  4PNV A;  1JQL A;  4N97 A;  3RB9 A;  3D1E A;  4K3P A;  5FVE A;  4PNU A;  4N99 A;  1OK7 A;  4K74 A;  4K3S A;  3QSB B;  5FRQ A;  4RKI A;  3T0P A;  4TR8 A;  3L10 A;  4TR6 A;  3PGE B;  3L0W A;  3L0X A;  4MJR A;  4N98 A;  5AGU A;  4N95 A;  1JQJ A;  4K3R A;  4OVH A;  4N96 A;  1VPK A;  5AGV A;  5AH4 A;  4OVF A;  4PNW A;  4N9A A;  5AH2 A;  4TSZ A;  1UNN A;  3P16 A;  2AVT A;  3D1F A;  3PWE A;  4MJQ A;  3QSB A;  4S3I A;  2POL A;  3F1V A;  3D1G A;  3PGE A;  2AWA A;  4OVG A; 
#chains in the Genus database with same CATH homology
 3BEP A;  4K3M A;  4K3Q A;  1MMI A;  4TR7 A;  3Q4L A;  4K3L A;  3Q4J A;  4N94 A;  4TRT A;  4K3K A;  4K3O A;  4MJP A;  2XUR A;  4PNV A;  1JQL A;  4N97 A;  3RB9 A;  3D1E A;  4K3P A;  5FVE A;  4PNU A;  4N99 A;  1OK7 A;  4K74 A;  4K3S A;  3QSB B;  5FRQ A;  4RKI A;  3T0P A;  4TR8 A;  3L10 A;  4TR6 A;  3PGE B;  3L0W A;  3L0X A;  4MJR A;  4N98 A;  5AGU A;  4N95 A;  1JQJ A;  4K3R A;  4OVH A;  4N96 A;  1VPK A;  5AGV A;  5AH4 A;  4OVF A;  4PNW A;  4N9A A;  5AH2 A;  4TSZ A;  1UNN A;  3P16 A;  2AVT A;  3D1F A;  3PWE A;  4MJQ A;  3QSB A;  4S3I A;  2POL A;  3F1V A;  3D1G A;  3Q4K A;  2AWA A;  4OVG A; 
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