4K3MA

E.coli sliding clamp in complex with acaldlf peptide
Total Genus 92
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
92
sequence length
365
structure length
358
Chain Sequence
MKFTVEREHLLKPLQQVSGLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYVVMPMR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords DNA polymerase III subunit beta
publication title Structural and Thermodynamic Dissection of Linear Motif Recognition by the E. coli Sliding Clamp
pubmed doi rcsb
source organism Escherichia coli
total genus 92
structure length 358
sequence length 365
chains with identical sequence B
ec nomenclature ec 2.7.7.7: DNA-directed DNA polymerase.
pdb deposition date 2013-04-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00712 DNA_pol3_beta DNA polymerase III beta subunit, N-terminal domain
A PF02767 DNA_pol3_beta_2 DNA polymerase III beta subunit, central domain
A PF02768 DNA_pol3_beta_3 DNA polymerase III beta subunit, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.150.10 Alpha Beta Roll DNA Polymerase III; Chain A, domain 2 DNA Polymerase III, subunit A, domain 2 4k3mA02
3.10.150.10 Alpha Beta Roll DNA Polymerase III; Chain A, domain 2 DNA Polymerase III, subunit A, domain 2 4k3mA03
3.10.150.10 Alpha Beta Roll DNA Polymerase III; Chain A, domain 2 DNA Polymerase III, subunit A, domain 2 4k3mA01
4N9AA 1OK7A 3F1VA 4RKIA 3T0PA 4TR6A 3D1EA 3BEPA 3QSBA 3PGEB 4K3LA 4K74A 4N99A 4OVFA 4TR7A 3L10A 4K3PA 4PNWA 5FVEA 4S3IA 1VPKA 4N96A 4PNVA 4N95A 3P16A 4K3QA 4MJRA 3Q4LA 4MJPA 4OVHA 3L0WA 5AH2A 4TSZA 2POLA 4MJQA 3RB9A 1UNNA 4K3KA 4K3SA 3L0XA 4TRTA 5AGUA 3D1FA 4K3MA 4OVGA 5FRQA 3QSBB 4N97A 4K3OA 3D1GA 4K3RA 4N94A 1JQJA 4TR8A 5AH4A 5AGVA 2AVTA 4PNUA 3PWEA 3Q4KA 4N98A 1MMIA 3Q4JA 2XURA 2AWAA 1JQLA
chains in the Genus database with same CATH superfamily
4N9AA 1OK7A 3F1VA 4RKIA 3T0PA 4TR6A 3D1EA 3BEPA 3QSBA 3PGEB 4K3LA 4K74A 4N99A 4OVFA 4TR7A 3L10A 4K3PA 3L0WB 4PNWA 5FVEA 4S3IA 1VPKA 4N96A 3L0XB 4PNVA 4N95A 3P16A 4K3QA 3PGEA 4MJRA 3Q4LA 4MJPA 4OVHA 3L0WA 5AH2A 4TSZA 2POLA 4MJQA 3RB9A 1UNNA 4K3KA 4K3SA 3L0XA 4TRTA 5AGUA 3D1FA 4K3MA 4OVGA 5FRQA 3QSBB 4N97A 4K3OA 3D1GA 4K3RA 3L10B 1JQJA 4N94A 4TR8A 5AH4A 5AGVA 2AVTA 4PNUA 3PWEA 3Q4KA 4N98A 1MMIA 3Q4JA 2XURA 2AWAA 1JQLA
chains in the Genus database with same CATH topology
4N9AA 1OK7A 3F1VA 4RKIA 3T0PA 4TR6A 3D1EA 3BEPA 3QSBA 3PGEB 4K3LA 4K74A 4N99A 4OVFA 4TR7A 3L10A 4K3PA 4PNWA 5FVEA 4S3IA 1VPKA 4N96A 4PNVA 4N95A 3P16A 4K3QA 4MJRA 3Q4LA 4MJPA 4OVHA 3L0WA 5AH2A 4TSZA 2POLA 4MJQA 3RB9A 1UNNA 4K3KA 4K3SA 3L0XA 4TRTA 5AGUA 3D1FA 4K3MA 4OVGA 5FRQA 3QSBB 4N97A 4K3OA 3D1GA 4K3RA 4N94A 1JQJA 4TR8A 5AH4A 5AGVA 2AVTA 4PNUA 3PWEA 3Q4KA 4N98A 1MMIA 3Q4JA 2XURA 2AWAA 1JQLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4N9A A;  1OK7 A;  3F1V A;  4RKI A;  3T0P A;  4TR6 A;  3D1E A;  3BEP A;  3QSB A;  3PGE B;  4K3L A;  4K74 A;  4N99 A;  4OVF A;  4TR7 A;  3L10 A;  4K3P A;  4PNW A;  5FVE A;  4S3I A;  1VPK A;  4N96 A;  4PNV A;  4N95 A;  3P16 A;  4K3Q A;  4MJR A;  3Q4L A;  4MJP A;  4OVH A;  3L0W A;  5AH2 A;  4TSZ A;  2POL A;  4MJQ A;  3RB9 A;  1UNN A;  4K3K A;  4K3S A;  3L0X A;  4TRT A;  5AGU A;  3D1F A;  4K3M A;  4OVG A;  5FRQ A;  3QSB B;  4N97 A;  4K3O A;  3D1G A;  4K3R A;  4N94 A;  1JQJ A;  4TR8 A;  5AH4 A;  5AGV A;  2AVT A;  4PNU A;  3PWE A;  3Q4K A;  4N98 A;  1MMI A;  3Q4J A;  2XUR A;  2AWA A;  1JQL A; 
#chains in the Genus database with same CATH topology
 4N9A A;  1OK7 A;  3F1V A;  4RKI A;  3T0P A;  4TR6 A;  3D1E A;  3BEP A;  3QSB A;  3PGE B;  4K3L A;  4K74 A;  4N99 A;  4OVF A;  4TR7 A;  3L10 A;  4K3P A;  3L0W B;  4PNW A;  5FVE A;  4S3I A;  1VPK A;  4N96 A;  3L0X B;  4PNV A;  4N95 A;  3P16 A;  4K3Q A;  3PGE A;  4MJR A;  3Q4L A;  4MJP A;  4OVH A;  3L0W A;  5AH2 A;  4TSZ A;  2POL A;  4MJQ A;  3RB9 A;  1UNN A;  4K3K A;  4K3S A;  3L0X A;  4TRT A;  5AGU A;  3D1F A;  4K3M A;  4OVG A;  5FRQ A;  3QSB B;  4N97 A;  4K3O A;  3D1G A;  4K3R A;  3L10 B;  1JQJ A;  4N94 A;  4TR8 A;  5AH4 A;  5AGV A;  2AVT A;  4PNU A;  3PWE A;  3Q4K A;  4N98 A;  1MMI A;  3Q4J A;  2XUR A;  2AWA A;  1JQL A; 
#chains in the Genus database with same CATH homology
 4N9A A;  1OK7 A;  3F1V A;  4RKI A;  3T0P A;  4TR6 A;  3D1E A;  3BEP A;  3QSB A;  3PGE B;  4K3L A;  4K74 A;  4N99 A;  4OVF A;  4TR7 A;  3L10 A;  4K3P A;  4PNW A;  5FVE A;  4S3I A;  1VPK A;  4N96 A;  4PNV A;  4N95 A;  3P16 A;  4K3Q A;  4MJR A;  3Q4L A;  4MJP A;  4OVH A;  3L0W A;  5AH2 A;  4TSZ A;  2POL A;  4MJQ A;  3RB9 A;  1UNN A;  4K3K A;  4K3S A;  3L0X A;  4TRT A;  5AGU A;  3D1F A;  4K3M A;  4OVG A;  5FRQ A;  3QSB B;  4N97 A;  4K3O A;  3D1G A;  4K3R A;  4N94 A;  1JQJ A;  4TR8 A;  5AH4 A;  5AGV A;  2AVT A;  4PNU A;  3PWE A;  3Q4K A;  4N98 A;  1MMI A;  3Q4J A;  2XUR A;  2AWA A;  1JQL A; 
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