4K3QA

E. coli sliding clamp in complex with acqldaf
Total Genus 88
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
88
sequence length
365
structure length
358
Chain Sequence
MKFTVEREHLLKPLQQVSGLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYVVMPMR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Transferase
molecule keywords DNA polymerase III subunit beta
publication title Structural and Thermodynamic Dissection of Linear Motif Recognition by the E. coli Sliding Clamp
pubmed doi rcsb
source organism Escherichia coli
total genus 88
structure length 358
sequence length 365
chains with identical sequence B
ec nomenclature ec 2.7.7.7: DNA-directed DNA polymerase.
pdb deposition date 2013-04-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00712 DNA_pol3_beta DNA polymerase III beta subunit, N-terminal domain
A PF02767 DNA_pol3_beta_2 DNA polymerase III beta subunit, central domain
A PF02768 DNA_pol3_beta_3 DNA polymerase III beta subunit, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.150.10 Alpha Beta Roll DNA Polymerase III; Chain A, domain 2 DNA Polymerase III, subunit A, domain 2 4k3qA02
3.10.150.10 Alpha Beta Roll DNA Polymerase III; Chain A, domain 2 DNA Polymerase III, subunit A, domain 2 4k3qA03
3.10.150.10 Alpha Beta Roll DNA Polymerase III; Chain A, domain 2 DNA Polymerase III, subunit A, domain 2 4k3qA01
4PNVA 3P16A 4PNWA 4N96A 3L0XA 4MJPA 5AH4A 3D1EA 3L0WA 4K3QA 2AWAA 3F1VA 2AVTA 4N94A 1MMIA 4N97A 3Q4LA 4N95A 5FRQA 5FVEA 3T0PA 4MJRA 1OK7A 1JQLA 4N98A 3D1FA 3Q4KA 1UNNA 2POLA 4TSZA 4S3IA 4K3SA 4K3MA 4N9AA 3BEPA 4K3PA 3Q4JA 4OVFA 4OVHA 4TR8A 4PNUA 4K3KA 3QSBA 3PWEA 4OVGA 4TR7A 4K3OA 4K3RA 5AGVA 5AGUA 4K74A 4TRTA 3RB9A 4MJQA 1VPKA 5AH2A 3D1GA 3L10A 4N99A 4RKIA 3PGEB 2XURA 3QSBB 1JQJA 4K3LA 4TR6A
chains in the Genus database with same CATH superfamily
4PNVA 3P16A 4PNWA 4N96A 3L0XA 4MJPA 3L10B 3D1EA 5AH4A 3L0WA 4K3QA 2AWAA 3F1VA 2AVTA 4N94A 1MMIA 4N97A 3Q4LA 4N95A 5FRQA 5FVEA 3T0PA 4MJRA 1OK7A 1JQLA 4N98A 3D1FA 3Q4KA 1UNNA 2POLA 4TSZA 4S3IA 4K3SA 3L0XB 4K3MA 4N9AA 3BEPA 3L0WB 4K3PA 3PGEA 3Q4JA 4OVFA 4OVHA 4TR8A 4PNUA 4K3KA 3QSBA 3PWEA 4OVGA 4TR7A 4K3OA 4K3RA 5AGVA 5AGUA 4K74A 4TRTA 3RB9A 4MJQA 1VPKA 5AH2A 3D1GA 3L10A 4N99A 4RKIA 3PGEB 2XURA 3QSBB 1JQJA 4K3LA 4TR6A
chains in the Genus database with same CATH topology
4PNVA 3P16A 4PNWA 4N96A 3L0XA 4MJPA 5AH4A 3D1EA 3L0WA 4K3QA 2AWAA 3F1VA 2AVTA 4N94A 1MMIA 4N97A 3Q4LA 4N95A 5FRQA 5FVEA 3T0PA 4MJRA 1OK7A 1JQLA 4N98A 3D1FA 3Q4KA 1UNNA 2POLA 4TSZA 4S3IA 4K3SA 4K3MA 4N9AA 3BEPA 4K3PA 3Q4JA 4OVFA 4OVHA 4TR8A 4PNUA 4K3KA 3QSBA 3PWEA 4OVGA 4TR7A 4K3OA 4K3RA 5AGVA 5AGUA 4K74A 4TRTA 3RB9A 4MJQA 1VPKA 5AH2A 3D1GA 3L10A 4N99A 4RKIA 3PGEB 2XURA 3QSBB 1JQJA 4K3LA 4TR6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4PNV A;  3P16 A;  4PNW A;  4N96 A;  3L0X A;  4MJP A;  5AH4 A;  3D1E A;  3L0W A;  4K3Q A;  2AWA A;  3F1V A;  2AVT A;  4N94 A;  1MMI A;  4N97 A;  3Q4L A;  4N95 A;  5FRQ A;  5FVE A;  3T0P A;  4MJR A;  1OK7 A;  1JQL A;  4N98 A;  3D1F A;  3Q4K A;  1UNN A;  2POL A;  4TSZ A;  4S3I A;  4K3S A;  4K3M A;  4N9A A;  3BEP A;  4K3P A;  3Q4J A;  4OVF A;  4OVH A;  4TR8 A;  4PNU A;  4K3K A;  3QSB A;  3PWE A;  4OVG A;  4TR7 A;  4K3O A;  4K3R A;  5AGV A;  5AGU A;  4K74 A;  4TRT A;  3RB9 A;  4MJQ A;  1VPK A;  5AH2 A;  3D1G A;  3L10 A;  4N99 A;  4RKI A;  3PGE B;  2XUR A;  3QSB B;  1JQJ A;  4K3L A;  4TR6 A; 
#chains in the Genus database with same CATH topology
 4PNV A;  3P16 A;  4PNW A;  4N96 A;  3L0X A;  4MJP A;  3L10 B;  3D1E A;  5AH4 A;  3L0W A;  4K3Q A;  2AWA A;  3F1V A;  2AVT A;  4N94 A;  1MMI A;  4N97 A;  3Q4L A;  4N95 A;  5FRQ A;  5FVE A;  3T0P A;  4MJR A;  1OK7 A;  1JQL A;  4N98 A;  3D1F A;  3Q4K A;  1UNN A;  2POL A;  4TSZ A;  4S3I A;  4K3S A;  3L0X B;  4K3M A;  4N9A A;  3BEP A;  3L0W B;  4K3P A;  3PGE A;  3Q4J A;  4OVF A;  4OVH A;  4TR8 A;  4PNU A;  4K3K A;  3QSB A;  3PWE A;  4OVG A;  4TR7 A;  4K3O A;  4K3R A;  5AGV A;  5AGU A;  4K74 A;  4TRT A;  3RB9 A;  4MJQ A;  1VPK A;  5AH2 A;  3D1G A;  3L10 A;  4N99 A;  4RKI A;  3PGE B;  2XUR A;  3QSB B;  1JQJ A;  4K3L A;  4TR6 A; 
#chains in the Genus database with same CATH homology
 4PNV A;  3P16 A;  4PNW A;  4N96 A;  3L0X A;  4MJP A;  5AH4 A;  3D1E A;  3L0W A;  4K3Q A;  2AWA A;  3F1V A;  2AVT A;  4N94 A;  1MMI A;  4N97 A;  3Q4L A;  4N95 A;  5FRQ A;  5FVE A;  3T0P A;  4MJR A;  1OK7 A;  1JQL A;  4N98 A;  3D1F A;  3Q4K A;  1UNN A;  2POL A;  4TSZ A;  4S3I A;  4K3S A;  4K3M A;  4N9A A;  3BEP A;  4K3P A;  3Q4J A;  4OVF A;  4OVH A;  4TR8 A;  4PNU A;  4K3K A;  3QSB A;  3PWE A;  4OVG A;  4TR7 A;  4K3O A;  4K3R A;  5AGV A;  5AGU A;  4K74 A;  4TRT A;  3RB9 A;  4MJQ A;  1VPK A;  5AH2 A;  3D1G A;  3L10 A;  4N99 A;  4RKI A;  3PGE B;  2XUR A;  3QSB B;  1JQJ A;  4K3L A;  4TR6 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...