4K47A

Structure of the streptococcus pneumoniae leucyl-trna synthetase editing domain bound to a benzoxaborole-amp adduct
Total Genus 52
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
183
structure length
183
Chain Sequence
TGANVTFKVKGTDKEFTVFTTRPDTLFGATFTVLAPEHELVDAITSSEQAEAVADYKHQASLKSDLVRTDLAKEKTGVWTGAYAINPVNGKEMPIWIADYVLASYGTGAVMAVPAHDQRDWEFAKQFDLPIVEVLEGGNVEEAAYTEDGLHVNSDFLDGLNKEDAIAKIVASLEEKGCGQEKV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Ligase/ligase inhibitor
molecule keywords Leucine--tRNA ligase
publication title Discovery of a potent benzoxaborole-based anti-pneumococcal agent targeting leucyl-tRNA synthetase
pubmed doi rcsb
source organism Streptococcus pneumoniae
total genus 52
structure length 183
sequence length 183
ec nomenclature ec 6.1.1.4: Leucine--tRNA ligase.
pdb deposition date 2013-04-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.740.10 Alpha Beta Alpha-Beta Complex Isoleucyl-tRNA Synthetase; domain 2 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 4k47A00
5AGJA 1UDZA 2V0CA 5AGTA 2WFEA 4ARCA 3PZ6A 1OBCA 4K48A 2V0GA 3PZ5A 5AGSA 4K47A 5AGHA 3ZJUA 2BYTA 1JZSA 2WFGA 1JZQA 4AQ7A 3ZGZA 3O0AA 1WNZA 4AS1A 1WKBA 1FFYA 3ZJVA 1WK9A 2AJGA 2WFDA 3PZ0A 1QU2A 1GAXA 1H3NA 1WK8A 5AGIA 1WKAA 5AGRA 3ZJTA 1OBHA 1ILEA 4ARIA 1WNYA 2AJIA 2BTEA 1UE0A 1IVSA 4CQNA 1QU3A 1WZ2A 2AJHA
chains in the Genus database with same CATH superfamily
5AGJA 1UDZA 2V0CA 5AGTA 2WFEA 4ARCA 3PZ6A 1OBCA 4K48A 2V0GA 3PZ5A 5AGSA 4K47A 5AGHA 3ZJUA 2BYTA 1JZSA 2WFGA 1JZQA 4AQ7A 3ZGZA 3O0AA 1WNZA 4AS1A 1WKBA 1FFYA 3ZJVA 1WK9A 2AJGA 2WFDA 3PZ0A 1QU2A 1GAXA 1H3NA 1WK8A 5AGIA 1WKAA 5AGRA 3ZJTA 1OBHA 1ILEA 4ARIA 1WNYA 2AJIA 2BTEA 1UE0A 1IVSA 4CQNA 1QU3A 1WZ2A 2AJHA
chains in the Genus database with same CATH topology
5AGJA 1UDZA 2V0CA 5AGTA 2WFEA 4ARCA 3PZ6A 1OBCA 4K48A 2V0GA 3PZ5A 5AGSA 4K47A 5AGHA 3ZJUA 2BYTA 1JZSA 2WFGA 1JZQA 4AQ7A 3ZGZA 3O0AA 1WNZA 4AS1A 1WKBA 1FFYA 3ZJVA 1WK9A 2AJGA 2WFDA 3PZ0A 1QU2A 1GAXA 1H3NA 1WK8A 5AGIA 1WKAA 5AGRA 3ZJTA 1OBHA 1ILEA 4ARIA 1WNYA 2AJIA 2BTEA 1UE0A 1IVSA 4CQNA 1QU3A 1WZ2A 2AJHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5AGJ A;  1UDZ A;  2V0C A;  5AGT A;  2WFE A;  4ARC A;  3PZ6 A;  1OBC A;  4K48 A;  2V0G A;  3PZ5 A;  5AGS A;  4K47 A;  5AGH A;  3ZJU A;  2BYT A;  1JZS A;  2WFG A;  1JZQ A;  4AQ7 A;  3ZGZ A;  3O0A A;  1WNZ A;  4AS1 A;  1WKB A;  1FFY A;  3ZJV A;  1WK9 A;  2AJG A;  2WFD A;  3PZ0 A;  1QU2 A;  1GAX A;  1H3N A;  1WK8 A;  5AGI A;  1WKA A;  5AGR A;  3ZJT A;  1OBH A;  1ILE A;  4ARI A;  1WNY A;  2AJI A;  2BTE A;  1UE0 A;  1IVS A;  4CQN A;  1QU3 A;  1WZ2 A;  2AJH A; 
#chains in the Genus database with same CATH topology
 5AGJ A;  1UDZ A;  2V0C A;  5AGT A;  2WFE A;  4ARC A;  3PZ6 A;  1OBC A;  4K48 A;  2V0G A;  3PZ5 A;  5AGS A;  4K47 A;  5AGH A;  3ZJU A;  2BYT A;  1JZS A;  2WFG A;  1JZQ A;  4AQ7 A;  3ZGZ A;  3O0A A;  1WNZ A;  4AS1 A;  1WKB A;  1FFY A;  3ZJV A;  1WK9 A;  2AJG A;  2WFD A;  3PZ0 A;  1QU2 A;  1GAX A;  1H3N A;  1WK8 A;  5AGI A;  1WKA A;  5AGR A;  3ZJT A;  1OBH A;  1ILE A;  4ARI A;  1WNY A;  2AJI A;  2BTE A;  1UE0 A;  1IVS A;  4CQN A;  1QU3 A;  1WZ2 A;  2AJH A; 
#chains in the Genus database with same CATH homology
 5AGJ A;  1UDZ A;  2V0C A;  5AGT A;  2WFE A;  4ARC A;  3PZ6 A;  1OBC A;  4K48 A;  2V0G A;  3PZ5 A;  5AGS A;  4K47 A;  5AGH A;  3ZJU A;  2BYT A;  1JZS A;  2WFG A;  1JZQ A;  4AQ7 A;  3ZGZ A;  3O0A A;  1WNZ A;  4AS1 A;  1WKB A;  1FFY A;  3ZJV A;  1WK9 A;  2AJG A;  2WFD A;  3PZ0 A;  1QU2 A;  1GAX A;  1H3N A;  1WK8 A;  5AGI A;  1WKA A;  5AGR A;  3ZJT A;  1OBH A;  1ILE A;  4ARI A;  1WNY A;  2AJI A;  2BTE A;  1UE0 A;  1IVS A;  4CQN A;  1QU3 A;  1WZ2 A;  2AJH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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