4K6UA

Crystal structure of ad37 fiber knob in complex with trivalent sialic acid inhibitor me0386
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
184
structure length
184
Chain Sequence
DTRTLWTTPDTSPNCTIAQDKDSKLTLVLTKCGSQILANVSLIVVAGKYHIINNKTNPKIKSFTIKLLFNKNGVLLDNSNLGKAYWNFRSGNSNVSTAYEKAIGFMPNLVAYPKPSNSKKYARDIVYGTIYLGGKPDQPAVIKTTFNQETGCEYSITFNFSWSKTYENVEFETTSFTFSYIAQE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein
molecule keywords Fiber protein
publication title Triazole linker-based trivalent sialic acid inhibitors of adenovirus type 37 infection of human corneal epithelial cells.
pubmed doi rcsb
source organism Human adenovirus 37
total genus 43
structure length 184
sequence length 184
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2013-04-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00541 Adeno_knob Adenoviral fibre protein (knob domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.90.10 Mainly Beta Sandwich Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) Adenovirus pIV-related, attachment domain 4k6uA00
2QLKA 2WGUA 4K6UA 1P69A 4K6WA 2WBWA 2J12A 3BQ4A 3L89A 3QNDA 3F0YA 4XQAA 4K6TA 2WSTA 3N0IA 1NOBA 4ATZA 4LIYA 1KACA 3EXVA 4K6VA 1P6AA 1UXEA 2O39A 1UXAA 2J1KC 2BZVA 2BZUA 2WGTA 3L88A 4ZDGA 1KNBA 4WYJA 3CNCA 2J2JA 2WBVA 4XQBA 1QIUA 1H7ZA 4XL8A 2W9LC 1UXBA 3O8EA 3EXWA 1QHVA
chains in the Genus database with same CATH superfamily
2QLKA 2WGUA 4K6UA 4XC5A 1P69A 4K6WA 4D63A 2WBWA 2J12A 3BQ4A 3L89A 3QNDA 3F0YA 4GU3A 4XQAA 4K6TA 2WSTA 3N0IA 1NOBA 2VRSA 2BSFA 4ATZA 4GU4A 1KACA 3EXVA 4LIYA 5MHSA 4K6VA 1P6AA 1UXEA 2JJLA 1UXAA 2O39A 2OJ6A 2J1KC 2OJ5A 2IUMA 3S6XA 2BT8A 2BZVA 4CW8A 3EOYA 4D62A 2BZUA 2WGTA 3L88A 4ZDGA 1KNBA 4WYJA 3CNCA 2BT7A 2J2JA 4ODBA 2WBVA 4XQBA 1KKEA 1QIUA 2IUNA 1H7ZA 3ZPFA 2VTWA 4XL8A 2W9LC 1UXBA 3ZPEA 3O8EA 3EXWA 1QHVA
chains in the Genus database with same CATH topology
2QLKA 2WGUA 4K6UA 1P69A 4K6WA 2WBWA 2J12A 3BQ4A 3L89A 3QNDA 3F0YA 4XQAA 4K6TA 2WSTA 3N0IA 1NOBA 4ATZA 4LIYA 1KACA 3EXVA 4K6VA 1P6AA 1UXEA 2O39A 1UXAA 2J1KC 2BZVA 2BZUA 2WGTA 3L88A 4ZDGA 1KNBA 4WYJA 3CNCA 2J2JA 2WBVA 4XQBA 1QIUA 1H7ZA 4XL8A 2W9LC 1UXBA 3O8EA 3EXWA 1QHVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QLK A;  2WGU A;  4K6U A;  1P69 A;  4K6W A;  2WBW A;  2J12 A;  3BQ4 A;  3L89 A;  3QND A;  3F0Y A;  4XQA A;  4K6T A;  2WST A;  3N0I A;  1NOB A;  4ATZ A;  4LIY A;  1KAC A;  3EXV A;  4K6V A;  1P6A A;  1UXE A;  2O39 A;  1UXA A;  2J1K C;  2BZV A;  2BZU A;  2WGT A;  3L88 A;  4ZDG A;  1KNB A;  4WYJ A;  3CNC A;  2J2J A;  2WBV A;  4XQB A;  1QIU A;  1H7Z A;  4XL8 A;  2W9L C;  1UXB A;  3O8E A;  3EXW A;  1QHV A; 
#chains in the Genus database with same CATH topology
 2QLK A;  2WGU A;  4K6U A;  4XC5 A;  1P69 A;  4K6W A;  4D63 A;  2WBW A;  2J12 A;  3BQ4 A;  3L89 A;  3QND A;  3F0Y A;  4GU3 A;  4XQA A;  4K6T A;  2WST A;  3N0I A;  1NOB A;  2VRS A;  2BSF A;  4ATZ A;  4GU4 A;  1KAC A;  3EXV A;  4LIY A;  5MHS A;  4K6V A;  1P6A A;  1UXE A;  2JJL A;  1UXA A;  2O39 A;  2OJ6 A;  2J1K C;  2OJ5 A;  2IUM A;  3S6X A;  2BT8 A;  2BZV A;  4CW8 A;  3EOY A;  4D62 A;  2BZU A;  2WGT A;  3L88 A;  4ZDG A;  1KNB A;  4WYJ A;  3CNC A;  2BT7 A;  2J2J A;  4ODB A;  2WBV A;  4XQB A;  1KKE A;  1QIU A;  2IUN A;  1H7Z A;  3ZPF A;  2VTW A;  4XL8 A;  2W9L C;  1UXB A;  3ZPE A;  3O8E A;  3EXW A;  1QHV A; 
#chains in the Genus database with same CATH homology
 2QLK A;  2WGU A;  4K6U A;  1P69 A;  4K6W A;  2WBW A;  2J12 A;  3BQ4 A;  3L89 A;  3QND A;  3F0Y A;  4XQA A;  4K6T A;  2WST A;  3N0I A;  1NOB A;  4ATZ A;  4LIY A;  1KAC A;  3EXV A;  4K6V A;  1P6A A;  1UXE A;  2O39 A;  1UXA A;  2J1K C;  2BZV A;  2BZU A;  2WGT A;  3L88 A;  4ZDG A;  1KNB A;  4WYJ A;  3CNC A;  2J2J A;  2WBV A;  4XQB A;  1QIU A;  1H7Z A;  4XL8 A;  2W9L C;  1UXB A;  3O8E A;  3EXW A;  1QHV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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