4K6VA

Crystal structure of ad37 fiber knob in complex with trivalent sialic acid inhibitor me0407
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
184
structure length
184
Chain Sequence
DTRTLWTTPDTSPNCTIAQDKDSKLTLVLTKCGSQILANVSLIVVAGKYHIINNKTNPKIKSFTIKLLFNKNGVLLDNSNLGKAYWNFRSGNSNVSTAYEKAIGFMPNLVAYPKPSNSKKYARDIVYGTIYLGGKPDQPAVIKTTFNQETGCEYSITFNFSWSKTYENVEFETTSFTFSYIAQE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein
molecule keywords Fiber protein
publication title Triazole linker-based trivalent sialic acid inhibitors of adenovirus type 37 infection of human corneal epithelial cells.
pubmed doi rcsb
source organism Human adenovirus 37
total genus 45
structure length 184
sequence length 184
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2013-04-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00541 Adeno_knob Adenoviral fibre protein (knob domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.90.10 Mainly Beta Sandwich Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) Adenovirus pIV-related, attachment domain 4k6vA00
2BZVA 1H7ZA 2WBVA 3EXVA 1KNBA 2QLKA 2WGTA 2WBWA 1UXAA 2WGUA 4ATZA 1QHVA 2WSTA 4K6WA 4K6TA 4K6UA 3N0IA 1UXBA 2BZUA 2J1KC 4K6VA 3BQ4A 3EXWA 3F0YA 2J12A 2J2JA 4XQAA 4WYJA 2O39A 4ZDGA 1NOBA 1P69A 3L89A 3CNCA 3O8EA 2W9LC 4LIYA 1P6AA 4XL8A 1UXEA 4XQBA 3QNDA 3L88A 1KACA 1QIUA
chains in the Genus database with same CATH superfamily
2IUMA 2BZVA 2VTWA 1H7ZA 2WBVA 4GU3A 3EXVA 1KNBA 2QLKA 2WGTA 4GU4A 2WBWA 1UXAA 4ODBA 2IUNA 2WGUA 4ATZA 1QHVA 2OJ5A 2WSTA 4K6WA 4K6UA 3N0IA 2BT8A 4K6TA 1UXBA 2BZUA 2J1KC 4K6VA 3BQ4A 4XC5A 4D62A 4CW8A 2OJ6A 3EXWA 2BT7A 3F0YA 2J12A 2J2JA 2BSFA 4XQAA 4WYJA 2O39A 4ZDGA 5MHSA 4D63A 1NOBA 1P69A 3L89A 3S6XA 2JJLA 1KKEA 3CNCA 2VRSA 2W9LC 3EOYA 1P6AA 3O8EA 1UXEA 4LIYA 4XL8A 3QNDA 4XQBA 3ZPFA 3L88A 3ZPEA 1KACA 1QIUA
chains in the Genus database with same CATH topology
2BZVA 1H7ZA 2WBVA 3EXVA 1KNBA 2QLKA 2WGTA 2WBWA 1UXAA 2WGUA 4ATZA 1QHVA 2WSTA 4K6WA 4K6TA 4K6UA 3N0IA 1UXBA 2BZUA 2J1KC 4K6VA 3BQ4A 3EXWA 3F0YA 2J12A 2J2JA 4XQAA 4WYJA 2O39A 4ZDGA 1NOBA 1P69A 3L89A 3CNCA 3O8EA 2W9LC 4LIYA 1P6AA 4XL8A 1UXEA 4XQBA 3QNDA 3L88A 1KACA 1QIUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BZV A;  1H7Z A;  2WBV A;  3EXV A;  1KNB A;  2QLK A;  2WGT A;  2WBW A;  1UXA A;  2WGU A;  4ATZ A;  1QHV A;  2WST A;  4K6W A;  4K6T A;  4K6U A;  3N0I A;  1UXB A;  2BZU A;  2J1K C;  4K6V A;  3BQ4 A;  3EXW A;  3F0Y A;  2J12 A;  2J2J A;  4XQA A;  4WYJ A;  2O39 A;  4ZDG A;  1NOB A;  1P69 A;  3L89 A;  3CNC A;  3O8E A;  2W9L C;  4LIY A;  1P6A A;  4XL8 A;  1UXE A;  4XQB A;  3QND A;  3L88 A;  1KAC A;  1QIU A; 
#chains in the Genus database with same CATH topology
 2IUM A;  2BZV A;  2VTW A;  1H7Z A;  2WBV A;  4GU3 A;  3EXV A;  1KNB A;  2QLK A;  2WGT A;  4GU4 A;  2WBW A;  1UXA A;  4ODB A;  2IUN A;  2WGU A;  4ATZ A;  1QHV A;  2OJ5 A;  2WST A;  4K6W A;  4K6U A;  3N0I A;  2BT8 A;  4K6T A;  1UXB A;  2BZU A;  2J1K C;  4K6V A;  3BQ4 A;  4XC5 A;  4D62 A;  4CW8 A;  2OJ6 A;  3EXW A;  2BT7 A;  3F0Y A;  2J12 A;  2J2J A;  2BSF A;  4XQA A;  4WYJ A;  2O39 A;  4ZDG A;  5MHS A;  4D63 A;  1NOB A;  1P69 A;  3L89 A;  3S6X A;  2JJL A;  1KKE A;  3CNC A;  2VRS A;  2W9L C;  3EOY A;  1P6A A;  3O8E A;  1UXE A;  4LIY A;  4XL8 A;  3QND A;  4XQB A;  3ZPF A;  3L88 A;  3ZPE A;  1KAC A;  1QIU A; 
#chains in the Genus database with same CATH homology
 2BZV A;  1H7Z A;  2WBV A;  3EXV A;  1KNB A;  2QLK A;  2WGT A;  2WBW A;  1UXA A;  2WGU A;  4ATZ A;  1QHV A;  2WST A;  4K6W A;  4K6T A;  4K6U A;  3N0I A;  1UXB A;  2BZU A;  2J1K C;  4K6V A;  3BQ4 A;  3EXW A;  3F0Y A;  2J12 A;  2J2J A;  4XQA A;  4WYJ A;  2O39 A;  4ZDG A;  1NOB A;  1P69 A;  3L89 A;  3CNC A;  3O8E A;  2W9L C;  4LIY A;  1P6A A;  4XL8 A;  1UXE A;  4XQB A;  3QND A;  3L88 A;  1KAC A;  1QIU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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