4K7GB

Crystal structure of a 3-hydroxyproline dehydratse from agrobacterium vitis, target efi-506470, with bound pyrrole 2-carboxylate, ordered active site
Total Genus 90
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
90
sequence length
338
structure length
338
Chain Sequence
KVIHVIGVHAEGEVGDVIVGGVSPPPGDTLWEQSRFIASDETLRNFVLNEPRGGVFRHVNLLVPPKDPRAQMGFIIMEPADTPPMSGSNSICVSTAILDSGIISMQEPLTHMVLEAPGGVIEVTAECANGKAERINVLNVASFVTRLAAALEVEGLGTLTVDTAYGGDSFVIVDAIGLGFSLKPDEARELAELGMKITAAANEQLGFVHPCNADWNHISFCQMTTPITRENGILTGKSAVAIRPGKIDRSPTGTGCSARLAVMHARGEIGIGETYIGRSIIDSEFKCHIDSLTEIGGLSAIRPVISGRAWITGVSQLMLDPTDPWPSGYQLSDTWPAI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of a 3-hydroxyproline dehydratse from agrobacterium vitis, target efi-506470, with bound pyrrole 2-carboxylate, ordered active site
rcsb
source organism Agrobacterium vitis s4
molecule tags Isomerase
molecule keywords 3-hydroxyproline dehydratse
total genus 90
structure length 338
sequence length 338
chains with identical sequence D
ec nomenclature ec 4.2.1.77: Trans-L-3-hydroxyproline dehydratase.
pdb deposition date 2013-04-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF05544 Pro_racemase Proline racemase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 4k7gB02
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 4k7gB01
2OTNA 4JBDA 1U1XA 2Q9HA 4IK0A 2GKJA 5HA4A 4IJZA 2PVZA 2PW0A 4JD7A 1SDJA 2AZPA 1BWZA 4DUNA 5IWEA 4J9WA 4LB0A 4K7GB 1TM0A 1QY9A 4J9XA 1XUBA 5H2YA 1S7JA 3EDNA 4Q2HA 1T6KA 4Q60A 3EKMA 4JCIA 1QYAA 2GKEA 5H2GA 1U1WA 3FVEA 4K8LA 2Q9JA 1XUAA 3G7KA 1W61A 1U1VA 2H9FA 1W62A 5M47A 4JUUA 1YM5A 1GQZA 1U0KA 4K7XA 3EJXA
chains in the Genus database with same CATH superfamily
2KPTA 2OTNA 2EB0A 2Q9HA 1K23A 2QB8A 2ZXRA 2ZXOA 4PY9A 1XUBA 5H2YA 2IW4A 3EKMA 4JCIA 1QYAA 5H2GA 3FVEA 3PW9A 5M47A 4JUUA 1YM5A 1U0KA 4IK0A 4RPAA 4IJZA 2PVZA 4DUNA 3DEVA 4LS9A 1I74A 4J9WA 2HAWA 4K7GB 2QB6A 1TM0A 1QY9A 1WPMA 1S7JA 2YMAA 2GKEA 2ZVFA 3G7KA 1W61A 1U1VA 4K7XA 3ICJA 3EJXA 4JBDA 2QB7A 1U1XA 5HA4A 3PVHA 2PW0A 3G98A 2AZPA 1BWZA 5IWEA 4LB0A 3EDNA 4LG3A 4Q60A 4K8LA 2Q9JA 3PTJA 3W5WA 2ZXPA 5ANPA 2GKJA 4JD7A 1SDJA 1K20A 1WPPA 4J9XA 4Q2HA 1T6KA 2KW7A 3WQZA 1U1WA 4OA3A 1XUAA 2LT2A 2H9FA 3IGHX 1W62A 2ENXA 1GQZA 4GL6A 1IR6A 2MPBA
chains in the Genus database with same CATH topology
2KPTA 2OTNA 2EB0A 2Q9HA 1K23A 2QB8A 2ZXRA 2ZXOA 4PY9A 1XUBA 5H2YA 2IW4A 3EKMA 4JCIA 1QYAA 5H2GA 3FVEA 3PW9A 5M47A 4JUUA 1YM5A 1U0KA 4IK0A 4RPAA 4IJZA 2PVZA 4DUNA 3DEVA 4LS9A 1I74A 4J9WA 2HAWA 4K7GB 2QB6A 1TM0A 1QY9A 1WPMA 1S7JA 2YMAA 2GKEA 2ZVFA 3G7KA 1W61A 1U1VA 4K7XA 3ICJA 3EJXA 4JBDA 2QB7A 1U1XA 5HA4A 3PVHA 2PW0A 3G98A 2AZPA 1BWZA 5IWEA 4LB0A 3EDNA 4LG3A 4Q60A 4K8LA 2Q9JA 3PTJA 3W5WA 2ZXPA 5ANPA 2GKJA 4JD7A 1SDJA 1K20A 1WPPA 4J9XA 4Q2HA 1T6KA 2KW7A 3WQZA 1U1WA 4OA3A 1XUAA 2LT2A 2H9FA 3IGHX 1W62A 2ENXA 1GQZA 4GL6A 1IR6A 2MPBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OTN A;  4JBD A;  1U1X A;  2Q9H A;  4IK0 A;  2GKJ A;  5HA4 A;  4IJZ A;  2PVZ A;  2PW0 A;  4JD7 A;  1SDJ A;  2AZP A;  1BWZ A;  4DUN A;  5IWE A;  4J9W A;  4LB0 A;  4K7G B;  1TM0 A;  1QY9 A;  4J9X A;  1XUB A;  5H2Y A;  1S7J A;  3EDN A;  4Q2H A;  1T6K A;  4Q60 A;  3EKM A;  4JCI A;  1QYA A;  2GKE A;  5H2G A;  1U1W A;  3FVE A;  4K8L A;  2Q9J A;  1XUA A;  3G7K A;  1W61 A;  1U1V A;  2H9F A;  1W62 A;  5M47 A;  4JUU A;  1YM5 A;  1GQZ A;  1U0K A;  4K7X A;  3EJX A; 
#chains in the Genus database with same CATH topology
 2KPT A;  2OTN A;  2EB0 A;  2Q9H A;  1K23 A;  2QB8 A;  2ZXR A;  2ZXO A;  4PY9 A;  1XUB A;  5H2Y A;  2IW4 A;  3EKM A;  4JCI A;  1QYA A;  5H2G A;  3FVE A;  3PW9 A;  5M47 A;  4JUU A;  1YM5 A;  1U0K A;  4IK0 A;  4RPA A;  4IJZ A;  2PVZ A;  4DUN A;  3DEV A;  4LS9 A;  1I74 A;  4J9W A;  2HAW A;  4K7G B;  2QB6 A;  1TM0 A;  1QY9 A;  1WPM A;  1S7J A;  2YMA A;  2GKE A;  2ZVF A;  3G7K A;  1W61 A;  1U1V A;  4K7X A;  3ICJ A;  3EJX A;  4JBD A;  2QB7 A;  1U1X A;  5HA4 A;  3PVH A;  2PW0 A;  3G98 A;  2AZP A;  1BWZ A;  5IWE A;  4LB0 A;  3EDN A;  4LG3 A;  4Q60 A;  4K8L A;  2Q9J A;  3PTJ A;  3W5W A;  2ZXP A;  5ANP A;  2GKJ A;  4JD7 A;  1SDJ A;  1K20 A;  1WPP A;  4J9X A;  4Q2H A;  1T6K A;  2KW7 A;  3WQZ A;  1U1W A;  4OA3 A;  1XUA A;  2LT2 A;  2H9F A;  3IGH X;  1W62 A;  2ENX A;  1GQZ A;  4GL6 A;  1IR6 A;  2MPB A; 
#chains in the Genus database with same CATH homology
 2KPT A;  2OTN A;  2EB0 A;  2Q9H A;  1K23 A;  2QB8 A;  2ZXR A;  2ZXO A;  4PY9 A;  1XUB A;  5H2Y A;  2IW4 A;  3EKM A;  4JCI A;  1QYA A;  5H2G A;  3FVE A;  3PW9 A;  5M47 A;  4JUU A;  1YM5 A;  1U0K A;  4IK0 A;  4RPA A;  4IJZ A;  2PVZ A;  4DUN A;  3DEV A;  4LS9 A;  1I74 A;  4J9W A;  2HAW A;  4K7G B;  2QB6 A;  1TM0 A;  1QY9 A;  1WPM A;  1S7J A;  2YMA A;  2GKE A;  2ZVF A;  3G7K A;  1W61 A;  1U1V A;  4K7X A;  3ICJ A;  3EJX A;  4JBD A;  2QB7 A;  1U1X A;  5HA4 A;  3PVH A;  2PW0 A;  3G98 A;  2AZP A;  1BWZ A;  5IWE A;  4LB0 A;  3EDN A;  4LG3 A;  4Q60 A;  4K8L A;  2Q9J A;  3PTJ A;  3W5W A;  2ZXP A;  5ANP A;  2GKJ A;  4JD7 A;  1SDJ A;  1K20 A;  1WPP A;  4J9X A;  4Q2H A;  1T6K A;  2KW7 A;  3WQZ A;  1U1W A;  4OA3 A;  1XUA A;  2LT2 A;  2H9F A;  3IGH X;  1W62 A;  2ENX A;  1GQZ A;  4GL6 A;  1IR6 A;  2MPB A; 
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similar chains in the Genus database (?% sequence similarity)
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