4K7GB

Crystal structure of a 3-hydroxyproline dehydratse from agrobacterium vitis, target efi-506470, with bound pyrrole 2-carboxylate, ordered active site
Total Genus 90
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
90
sequence length
338
structure length
338
Chain Sequence
KVIHVIGVHAEGEVGDVIVGGVSPPPGDTLWEQSRFIASDETLRNFVLNEPRGGVFRHVNLLVPPKDPRAQMGFIIMEPADTPPMSGSNSICVSTAILDSGIISMQEPLTHMVLEAPGGVIEVTAECANGKAERINVLNVASFVTRLAAALEVEGLGTLTVDTAYGGDSFVIVDAIGLGFSLKPDEARELAELGMKITAAANEQLGFVHPCNADWNHISFCQMTTPITRENGILTGKSAVAIRPGKIDRSPTGTGCSARLAVMHARGEIGIGETYIGRSIIDSEFKCHIDSLTEIGGLSAIRPVISGRAWITGVSQLMLDPTDPWPSGYQLSDTWPAI
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords 3-hydroxyproline dehydratse
publication title Crystal structure of a 3-hydroxyproline dehydratse from agrobacterium vitis, target efi-506470, with bound pyrrole 2-carboxylate, ordered active site
rcsb
source organism Agrobacterium vitis s4
molecule tags Isomerase
total genus 90
structure length 338
sequence length 338
chains with identical sequence D
ec nomenclature ec 4.2.1.77: Trans-L-3-hydroxyproline dehydratase.
pdb deposition date 2013-04-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF05544 Pro_racemase Proline racemase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 4k7gB02
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 4k7gB01
5H2GA 1U1XA 2PW0A 4J9XA 5M47A 1XUAA 4JUUA 4JCIA 3EKMA 5IWEA 1SDJA 2H9FA 2Q9JA 4JD7A 2OTNA 3EDNA 1BWZA 4K7GB 1U1WA 1U0KA 1XUBA 4JBDA 1GQZA 1TM0A 3EJXA 4IK0A 4K7XA 1QYAA 3G7KA 4J9WA 2Q9HA 4LB0A 1YM5A 1U1VA 1QY9A 1W61A 2AZPA 3FVEA 4Q2HA 2GKEA 1T6KA 4Q60A 5HA4A 4DUNA 1S7JA 5H2YA 2PVZA 4K8LA 2GKJA 1W62A 4IJZA
chains in the Genus database with same CATH superfamily
3ICJA 4LG3A 2HAWA 4RPAA 1K20A 1U0KA 1WPMA 1GQZA 1TM0A 3G98A 1QYAA 2EB0A 3WQZA 5ANPA 2KPTA 4J9WA 2QB6A 2YMAA 5HA4A 4K8LA 4GL6A 1W62A 4IJZA 5M47A 1XUAA 3EKMA 5IWEA 1SDJA 2H9FA 4JD7A 2OTNA 4JBDA 2ZXPA 3PVHA 1I74A 3G7KA 2ZXRA 1YM5A 2QB8A 2AZPA 3PTJA 4OA3A 4DUNA 1S7JA 5H2YA 1WPPA 2PVZA 2QB7A 1K23A 2PW0A 2ENXA 2IW4A 4JUUA 4K7GB 1U1WA 1XUBA 3EJXA 2Q9HA 2ZXOA 3DEVA 4LB0A 3W5WA 1W61A 3FVEA 4Q2HA 2GKEA 1T6KA 2LT2A 1IR6A 2GKJA 2KW7A 4JCIA 5H2GA 1U1XA 4J9XA 4PY9A 2Q9JA 3IGHX 3EDNA 1BWZA 4IK0A 4K7XA 3PW9A 2ZVFA 1QY9A 4LS9A 4Q60A 2MPBA 1U1VA
chains in the Genus database with same CATH topology
3ICJA 4LG3A 2HAWA 4RPAA 1K20A 1U0KA 1WPMA 1GQZA 1TM0A 3G98A 1QYAA 2EB0A 3WQZA 5ANPA 2KPTA 4J9WA 2QB6A 2YMAA 5HA4A 4K8LA 4GL6A 1W62A 4IJZA 5M47A 1XUAA 3EKMA 5IWEA 1SDJA 2H9FA 4JD7A 2OTNA 4JBDA 2ZXPA 3PVHA 1I74A 3G7KA 2ZXRA 1YM5A 2QB8A 2AZPA 3PTJA 4OA3A 4DUNA 1S7JA 5H2YA 1WPPA 2PVZA 2QB7A 1K23A 2PW0A 2ENXA 2IW4A 4JUUA 4K7GB 1U1WA 1XUBA 3EJXA 2Q9HA 2ZXOA 3DEVA 4LB0A 3W5WA 1W61A 3FVEA 4Q2HA 2GKEA 1T6KA 2LT2A 1IR6A 2GKJA 2KW7A 4JCIA 5H2GA 1U1XA 4J9XA 4PY9A 2Q9JA 3IGHX 3EDNA 1BWZA 4IK0A 4K7XA 3PW9A 2ZVFA 1QY9A 4LS9A 4Q60A 2MPBA 1U1VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5H2G A;  1U1X A;  2PW0 A;  4J9X A;  5M47 A;  1XUA A;  4JUU A;  4JCI A;  3EKM A;  5IWE A;  1SDJ A;  2H9F A;  2Q9J A;  4JD7 A;  2OTN A;  3EDN A;  1BWZ A;  4K7G B;  1U1W A;  1U0K A;  1XUB A;  4JBD A;  1GQZ A;  1TM0 A;  3EJX A;  4IK0 A;  4K7X A;  1QYA A;  3G7K A;  4J9W A;  2Q9H A;  4LB0 A;  1YM5 A;  1U1V A;  1QY9 A;  1W61 A;  2AZP A;  3FVE A;  4Q2H A;  2GKE A;  1T6K A;  4Q60 A;  5HA4 A;  4DUN A;  1S7J A;  5H2Y A;  2PVZ A;  4K8L A;  2GKJ A;  1W62 A;  4IJZ A; 
#chains in the Genus database with same CATH topology
 3ICJ A;  4LG3 A;  2HAW A;  4RPA A;  1K20 A;  1U0K A;  1WPM A;  1GQZ A;  1TM0 A;  3G98 A;  1QYA A;  2EB0 A;  3WQZ A;  5ANP A;  2KPT A;  4J9W A;  2QB6 A;  2YMA A;  5HA4 A;  4K8L A;  4GL6 A;  1W62 A;  4IJZ A;  5M47 A;  1XUA A;  3EKM A;  5IWE A;  1SDJ A;  2H9F A;  4JD7 A;  2OTN A;  4JBD A;  2ZXP A;  3PVH A;  1I74 A;  3G7K A;  2ZXR A;  1YM5 A;  2QB8 A;  2AZP A;  3PTJ A;  4OA3 A;  4DUN A;  1S7J A;  5H2Y A;  1WPP A;  2PVZ A;  2QB7 A;  1K23 A;  2PW0 A;  2ENX A;  2IW4 A;  4JUU A;  4K7G B;  1U1W A;  1XUB A;  3EJX A;  2Q9H A;  2ZXO A;  3DEV A;  4LB0 A;  3W5W A;  1W61 A;  3FVE A;  4Q2H A;  2GKE A;  1T6K A;  2LT2 A;  1IR6 A;  2GKJ A;  2KW7 A;  4JCI A;  5H2G A;  1U1X A;  4J9X A;  4PY9 A;  2Q9J A;  3IGH X;  3EDN A;  1BWZ A;  4IK0 A;  4K7X A;  3PW9 A;  2ZVF A;  1QY9 A;  4LS9 A;  4Q60 A;  2MPB A;  1U1V A; 
#chains in the Genus database with same CATH homology
 3ICJ A;  4LG3 A;  2HAW A;  4RPA A;  1K20 A;  1U0K A;  1WPM A;  1GQZ A;  1TM0 A;  3G98 A;  1QYA A;  2EB0 A;  3WQZ A;  5ANP A;  2KPT A;  4J9W A;  2QB6 A;  2YMA A;  5HA4 A;  4K8L A;  4GL6 A;  1W62 A;  4IJZ A;  5M47 A;  1XUA A;  3EKM A;  5IWE A;  1SDJ A;  2H9F A;  4JD7 A;  2OTN A;  4JBD A;  2ZXP A;  3PVH A;  1I74 A;  3G7K A;  2ZXR A;  1YM5 A;  2QB8 A;  2AZP A;  3PTJ A;  4OA3 A;  4DUN A;  1S7J A;  5H2Y A;  1WPP A;  2PVZ A;  2QB7 A;  1K23 A;  2PW0 A;  2ENX A;  2IW4 A;  4JUU A;  4K7G B;  1U1W A;  1XUB A;  3EJX A;  2Q9H A;  2ZXO A;  3DEV A;  4LB0 A;  3W5W A;  1W61 A;  3FVE A;  4Q2H A;  2GKE A;  1T6K A;  2LT2 A;  1IR6 A;  2GKJ A;  2KW7 A;  4JCI A;  5H2G A;  1U1X A;  4J9X A;  4PY9 A;  2Q9J A;  3IGH X;  3EDN A;  1BWZ A;  4IK0 A;  4K7X A;  3PW9 A;  2ZVF A;  1QY9 A;  4LS9 A;  4Q60 A;  2MPB A;  1U1V A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...