4K7GB

Crystal structure of a 3-hydroxyproline dehydratse from agrobacterium vitis, target efi-506470, with bound pyrrole 2-carboxylate, ordered active site
Total Genus 90
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
90
sequence length
338
structure length
338
Chain Sequence
KVIHVIGVHAEGEVGDVIVGGVSPPPGDTLWEQSRFIASDETLRNFVLNEPRGGVFRHVNLLVPPKDPRAQMGFIIMEPADTPPMSGSNSICVSTAILDSGIISMQEPLTHMVLEAPGGVIEVTAECANGKAERINVLNVASFVTRLAAALEVEGLGTLTVDTAYGGDSFVIVDAIGLGFSLKPDEARELAELGMKITAAANEQLGFVHPCNADWNHISFCQMTTPITRENGILTGKSAVAIRPGKIDRSPTGTGCSARLAVMHARGEIGIGETYIGRSIIDSEFKCHIDSLTEIGGLSAIRPVISGRAWITGVSQLMLDPTDPWPSGYQLSDTWPAI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of a 3-hydroxyproline dehydratse from agrobacterium vitis, target efi-506470, with bound pyrrole 2-carboxylate, ordered active site
rcsb
source organism Agrobacterium vitis s4
molecule tags Isomerase
molecule keywords 3-hydroxyproline dehydratse
total genus 90
structure length 338
sequence length 338
chains with identical sequence D
ec nomenclature ec 4.2.1.77: Trans-L-3-hydroxyproline dehydratase.
pdb deposition date 2013-04-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF05544 Pro_racemase Proline racemase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 4k7gB02
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 4k7gB01
2H9FA 1YM5A 4LB0A 5H2YA 1QYAA 4K8LA 1U1WA 2GKEA 5HA4A 1GQZA 4Q60A 2PW0A 1XUAA 1U1XA 1BWZA 4J9WA 4K7GB 5M47A 1T6KA 1U0KA 5H2GA 1W61A 3EDNA 1TM0A 3EJXA 4IK0A 4JUUA 3FVEA 4IJZA 1S7JA 3G7KA 1W62A 1XUBA 3EKMA 2GKJA 4K7XA 5IWEA 4JCIA 2Q9HA 4Q2HA 2PVZA 2OTNA 1QY9A 1U1VA 4JD7A 2Q9JA 4DUNA 4J9XA 1SDJA 2AZPA 4JBDA
chains in the Genus database with same CATH superfamily
2GKEA 2QB7A 3WQZA 4PY9A 1IR6A 1W61A 3EDNA 2ENXA 2OTNA 1QY9A 2Q9JA 4DUNA 3G98A 4JBDA 4LB0A 5H2YA 3IGHX 1QYAA 5HA4A 1GQZA 4Q60A 2PW0A 2YMAA 1XUAA 3DEVA 2ZXRA 1W62A 2GKJA 1I74A 1WPMA 2HAWA 2MPBA 4Q2HA 2PVZA 1U1VA 2ZXOA 1SDJA 4J9XA 2AZPA 5IWEA 2H9FA 4LG3A 4K8LA 1BWZA 4J9WA 4LS9A 1U0KA 4GL6A 5ANPA 4IK0A 4JUUA 3PTJA 1WPPA 3G7KA 1XUBA 2LT2A 2KPTA 1K23A 3ICJA 2QB6A 3PW9A 4JD7A 4IJZA 4OA3A 2ZVFA 1YM5A 1U1WA 2KW7A 1U1XA 2QB8A 4K7GB 3PVHA 5M47A 1T6KA 5H2GA 1TM0A 3EJXA 3FVEA 1S7JA 2IW4A 3EKMA 4RPAA 4K7XA 4JCIA 2EB0A 2Q9HA 2ZXPA 1K20A 3W5WA
chains in the Genus database with same CATH topology
2GKEA 2QB7A 3WQZA 4PY9A 1IR6A 1W61A 3EDNA 2ENXA 2OTNA 1QY9A 2Q9JA 4DUNA 3G98A 4JBDA 4LB0A 5H2YA 3IGHX 1QYAA 5HA4A 1GQZA 4Q60A 2PW0A 2YMAA 1XUAA 3DEVA 2ZXRA 1W62A 2GKJA 1I74A 1WPMA 2HAWA 2MPBA 4Q2HA 2PVZA 1U1VA 2ZXOA 1SDJA 4J9XA 2AZPA 5IWEA 2H9FA 4LG3A 4K8LA 1BWZA 4J9WA 4LS9A 1U0KA 4GL6A 5ANPA 4IK0A 4JUUA 3PTJA 1WPPA 3G7KA 1XUBA 2LT2A 2KPTA 1K23A 3ICJA 2QB6A 3PW9A 4JD7A 4IJZA 4OA3A 2ZVFA 1YM5A 1U1WA 2KW7A 1U1XA 2QB8A 4K7GB 3PVHA 5M47A 1T6KA 5H2GA 1TM0A 3EJXA 3FVEA 1S7JA 2IW4A 3EKMA 4RPAA 4K7XA 4JCIA 2EB0A 2Q9HA 2ZXPA 1K20A 3W5WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2H9F A;  1YM5 A;  4LB0 A;  5H2Y A;  1QYA A;  4K8L A;  1U1W A;  2GKE A;  5HA4 A;  1GQZ A;  4Q60 A;  2PW0 A;  1XUA A;  1U1X A;  1BWZ A;  4J9W A;  4K7G B;  5M47 A;  1T6K A;  1U0K A;  5H2G A;  1W61 A;  3EDN A;  1TM0 A;  3EJX A;  4IK0 A;  4JUU A;  3FVE A;  4IJZ A;  1S7J A;  3G7K A;  1W62 A;  1XUB A;  3EKM A;  2GKJ A;  4K7X A;  5IWE A;  4JCI A;  2Q9H A;  4Q2H A;  2PVZ A;  2OTN A;  1QY9 A;  1U1V A;  4JD7 A;  2Q9J A;  4DUN A;  4J9X A;  1SDJ A;  2AZP A;  4JBD A; 
#chains in the Genus database with same CATH topology
 2GKE A;  2QB7 A;  3WQZ A;  4PY9 A;  1IR6 A;  1W61 A;  3EDN A;  2ENX A;  2OTN A;  1QY9 A;  2Q9J A;  4DUN A;  3G98 A;  4JBD A;  4LB0 A;  5H2Y A;  3IGH X;  1QYA A;  5HA4 A;  1GQZ A;  4Q60 A;  2PW0 A;  2YMA A;  1XUA A;  3DEV A;  2ZXR A;  1W62 A;  2GKJ A;  1I74 A;  1WPM A;  2HAW A;  2MPB A;  4Q2H A;  2PVZ A;  1U1V A;  2ZXO A;  1SDJ A;  4J9X A;  2AZP A;  5IWE A;  2H9F A;  4LG3 A;  4K8L A;  1BWZ A;  4J9W A;  4LS9 A;  1U0K A;  4GL6 A;  5ANP A;  4IK0 A;  4JUU A;  3PTJ A;  1WPP A;  3G7K A;  1XUB A;  2LT2 A;  2KPT A;  1K23 A;  3ICJ A;  2QB6 A;  3PW9 A;  4JD7 A;  4IJZ A;  4OA3 A;  2ZVF A;  1YM5 A;  1U1W A;  2KW7 A;  1U1X A;  2QB8 A;  4K7G B;  3PVH A;  5M47 A;  1T6K A;  5H2G A;  1TM0 A;  3EJX A;  3FVE A;  1S7J A;  2IW4 A;  3EKM A;  4RPA A;  4K7X A;  4JCI A;  2EB0 A;  2Q9H A;  2ZXP A;  1K20 A;  3W5W A; 
#chains in the Genus database with same CATH homology
 2GKE A;  2QB7 A;  3WQZ A;  4PY9 A;  1IR6 A;  1W61 A;  3EDN A;  2ENX A;  2OTN A;  1QY9 A;  2Q9J A;  4DUN A;  3G98 A;  4JBD A;  4LB0 A;  5H2Y A;  3IGH X;  1QYA A;  5HA4 A;  1GQZ A;  4Q60 A;  2PW0 A;  2YMA A;  1XUA A;  3DEV A;  2ZXR A;  1W62 A;  2GKJ A;  1I74 A;  1WPM A;  2HAW A;  2MPB A;  4Q2H A;  2PVZ A;  1U1V A;  2ZXO A;  1SDJ A;  4J9X A;  2AZP A;  5IWE A;  2H9F A;  4LG3 A;  4K8L A;  1BWZ A;  4J9W A;  4LS9 A;  1U0K A;  4GL6 A;  5ANP A;  4IK0 A;  4JUU A;  3PTJ A;  1WPP A;  3G7K A;  1XUB A;  2LT2 A;  2KPT A;  1K23 A;  3ICJ A;  2QB6 A;  3PW9 A;  4JD7 A;  4IJZ A;  4OA3 A;  2ZVF A;  1YM5 A;  1U1W A;  2KW7 A;  1U1X A;  2QB8 A;  4K7G B;  3PVH A;  5M47 A;  1T6K A;  5H2G A;  1TM0 A;  3EJX A;  3FVE A;  1S7J A;  2IW4 A;  3EKM A;  4RPA A;  4K7X A;  4JCI A;  2EB0 A;  2Q9H A;  2ZXP A;  1K20 A;  3W5W A; 
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similar chains in the Genus database (?% sequence similarity)
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