4K8UA

Crystal structure of traf4 traf domain
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
178
structure length
178
Chain Sequence
ELQELRRELEELSVGSDGVLIWKIGSYGRRLQEAKAKPNLECFSPAFYTHKYGYKLQVSAFLNGNGSGEGTHLSLYIRVLPGAFDNLLEWPFARRVTFSLLDQSDPGLAKPQHVTETFHPDPNWKNFQKPGTWRGSLDESSLGFGYPKFISHQDIRKRNYVRDDAVFIRAAVELPRKI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Signaling protein
molecule keywords TNF receptor-associated factor 4
publication title Structure of the TRAF4 TRAF domain with a coiled-coil domain and its implications for the TRAF4 signalling pathway
doi rcsb
source organism Homo sapiens
total genus 39
structure length 178
sequence length 178
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2013-04-18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.210.10 Mainly Beta Sandwich Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 4k8uA00
3MQSC 5E1TA 4K8UA 1CA9A 1KZZA 4YSIA 3IVBA 4CA1A 3IVVA 3MQRA 1FLLA 1CZZA 4I7CA 2FOPA 4Z8MA 4GWMA 1L0AA 1D01A 4I7BA 1K2FA 1LB6A 2F1ZA 1FLKA 2F1WA 4GWNA 2CR2A 3HSVA 4O1VA 1YY6A 2XXNA 5H9MA 4JJQA 1D0AA 1LB4A 4KG9A 2FOJA 2A25A 2F1YA 3ZJBA 1RF3A 4M4EA 1F3VB 2GKWA 4X3GA 3HQHA 3HU6A 4I7DA 1YZEA 3HQIA 1CZYA 1LB5A 1ZMSA 3IVQA 1D00A 3HQMA 4GJHA 1D0JA 4GHUA 1CA4A 2FOOA 2F1XA 4C9ZA 1QSCA 3HQLA 2AN6A
chains in the Genus database with same CATH superfamily
3MQSC 5E1TA 4K8UA 1CA9A 1KZZA 4YSIA 3IVBA 4CA1A 3IVVA 3MQRA 1FLLA 1CZZA 4I7CA 2FOPA 4Z8MA 4GWMA 1L0AA 1D01A 4I7BA 1K2FA 1LB6A 2F1ZA 1FLKA 2F1WA 4GWNA 2CR2A 3HSVA 4O1VA 1YY6A 2XXNA 5H9MA 4JJQA 1D0AA 1LB4A 4KG9A 2FOJA 2A25A 2F1YA 3ZJBA 1RF3A 4M4EA 1F3VB 2GKWA 4X3GA 3HQHA 3HU6A 4I7DA 1YZEA 3HQIA 1CZYA 1LB5A 1ZMSA 3IVQA 1D00A 3HQMA 4GJHA 1D0JA 4GHUA 1CA4A 2FOOA 2F1XA 4C9ZA 1QSCA 3HQLA 2AN6A
chains in the Genus database with same CATH topology
3MQSC 5E1TA 4K8UA 1CA9A 1KZZA 4YSIA 3IVBA 4CA1A 3IVVA 3MQRA 1FLLA 1CZZA 4I7CA 2FOPA 4Z8MA 4GWMA 1L0AA 1D01A 4I7BA 1K2FA 1LB6A 2F1ZA 1FLKA 2F1WA 4GWNA 2CR2A 3HSVA 4O1VA 1YY6A 2XXNA 5H9MA 4JJQA 1D0AA 1LB4A 4KG9A 2FOJA 2A25A 2F1YA 3ZJBA 1RF3A 4M4EA 1F3VB 2GKWA 4X3GA 3HQHA 3HU6A 4I7DA 1YZEA 3HQIA 1CZYA 1LB5A 1ZMSA 3IVQA 1D00A 3HQMA 4GJHA 1D0JA 4GHUA 1CA4A 2FOOA 2F1XA 4C9ZA 1QSCA 3HQLA 2AN6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MQS C;  5E1T A;  4K8U A;  1CA9 A;  1KZZ A;  4YSI A;  3IVB A;  4CA1 A;  3IVV A;  3MQR A;  1FLL A;  1CZZ A;  4I7C A;  2FOP A;  4Z8M A;  4GWM A;  1L0A A;  1D01 A;  4I7B A;  1K2F A;  1LB6 A;  2F1Z A;  1FLK A;  2F1W A;  4GWN A;  2CR2 A;  3HSV A;  4O1V A;  1YY6 A;  2XXN A;  5H9M A;  4JJQ A;  1D0A A;  1LB4 A;  4KG9 A;  2FOJ A;  2A25 A;  2F1Y A;  3ZJB A;  1RF3 A;  4M4E A;  1F3V B;  2GKW A;  4X3G A;  3HQH A;  3HU6 A;  4I7D A;  1YZE A;  3HQI A;  1CZY A;  1LB5 A;  1ZMS A;  3IVQ A;  1D00 A;  3HQM A;  4GJH A;  1D0J A;  4GHU A;  1CA4 A;  2FOO A;  2F1X A;  4C9Z A;  1QSC A;  3HQL A;  2AN6 A; 
#chains in the Genus database with same CATH topology
 3MQS C;  5E1T A;  4K8U A;  1CA9 A;  1KZZ A;  4YSI A;  3IVB A;  4CA1 A;  3IVV A;  3MQR A;  1FLL A;  1CZZ A;  4I7C A;  2FOP A;  4Z8M A;  4GWM A;  1L0A A;  1D01 A;  4I7B A;  1K2F A;  1LB6 A;  2F1Z A;  1FLK A;  2F1W A;  4GWN A;  2CR2 A;  3HSV A;  4O1V A;  1YY6 A;  2XXN A;  5H9M A;  4JJQ A;  1D0A A;  1LB4 A;  4KG9 A;  2FOJ A;  2A25 A;  2F1Y A;  3ZJB A;  1RF3 A;  4M4E A;  1F3V B;  2GKW A;  4X3G A;  3HQH A;  3HU6 A;  4I7D A;  1YZE A;  3HQI A;  1CZY A;  1LB5 A;  1ZMS A;  3IVQ A;  1D00 A;  3HQM A;  4GJH A;  1D0J A;  4GHU A;  1CA4 A;  2FOO A;  2F1X A;  4C9Z A;  1QSC A;  3HQL A;  2AN6 A; 
#chains in the Genus database with same CATH homology
 3MQS C;  5E1T A;  4K8U A;  1CA9 A;  1KZZ A;  4YSI A;  3IVB A;  4CA1 A;  3IVV A;  3MQR A;  1FLL A;  1CZZ A;  4I7C A;  2FOP A;  4Z8M A;  4GWM A;  1L0A A;  1D01 A;  4I7B A;  1K2F A;  1LB6 A;  2F1Z A;  1FLK A;  2F1W A;  4GWN A;  2CR2 A;  3HSV A;  4O1V A;  1YY6 A;  2XXN A;  5H9M A;  4JJQ A;  1D0A A;  1LB4 A;  4KG9 A;  2FOJ A;  2A25 A;  2F1Y A;  3ZJB A;  1RF3 A;  4M4E A;  1F3V B;  2GKW A;  4X3G A;  3HQH A;  3HU6 A;  4I7D A;  1YZE A;  3HQI A;  1CZY A;  1LB5 A;  1ZMS A;  3IVQ A;  1D00 A;  3HQM A;  4GJH A;  1D0J A;  4GHU A;  1CA4 A;  2FOO A;  2F1X A;  4C9Z A;  1QSC A;  3HQL A;  2AN6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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