4KA7A

Structure of organellar oligopeptidase (e572q) in complex with an endogenous substrate
Total Genus 272
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
272
sequence length
695
structure length
695
Chain Sequence
SDETLSSNPLLQDFDFPPFDSVDASHVRPGIRALLQHLEAELEELEKSVEPTWPKLVEPLEKIVDRLTVVWGMINHLKAVKDTPELRAAIEDVQPEKVKFQLRLGQSKPIYNAFKAIRESPDWSSLSEARQRLVEAQIKEAVLIGIALDDEKREEFNKIEQELEKLSHKFSENVLDATKKFEKLITDKKEIEGLPPSALGLFAQAAVSKGHENATAENGPWIITLDAPSYLPVMQHAKNRALREEVYRAYLSRASSGDLDNTAIIDQILKLRLEKAKLLGYNNYAEVSMAMKMATVEKAAELLEKLRSASWDAAVQDMEDLKSFAKNQGAAESDSMTHWDTTFWSERLRESKYDINEEELRPYFSLPKVMDGLFSLAKTLFGIDIEPADGLAPVWNNDVRFYRVKDSSGNPIAYFYFDPYSRPSEKRGGAWMDEVVSRSRVMAQKGSSVRLPVAHMVCNQTPPVGDKPSLMTFREVETVFHQFGHALQHMLTKQDEGLVAGIRNIEWDAVELPSQFMENWCYHRDTLMSIAKHYETGETLPEEVYKKLLAARTFRAGSFSLRQLKFASVDLELHTKYVPGGPESIYDVDQRVSVKTQVIPPLPEDRFLCSFSHIFAGGYAAGYYSYKWAEVLSADAFSAFEDAGLDDIKAVKETGQRFRNTILALGGGKAPLKVFVEFRGREPSPEPLLRHNGLL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase/hydrolase substrate
molecule keywords Oligopeptidase A
publication title Organellar oligopeptidase (OOP) provides a complementary pathway for targeting peptide degradation in mitochondria and chloroplasts.
pubmed doi rcsb
source organism Arabidopsis thaliana
total genus 272
structure length 695
sequence length 695
ec nomenclature ec 3.4.24.70: Oligopeptidase A.
pdb deposition date 2013-04-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01432 Peptidase_M3 Peptidase family M3
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1370.10 Mainly Alpha Orthogonal Bundle Neurolysin; domain 3 Neurolysin, domain 3 4ka7A02
1.10.1370.40 Mainly Alpha Orthogonal Bundle Neurolysin; domain 3 Neurolysin; domain 3 4ka7A01
1I1IP 1S4BP 5L44A 4FXYP 2O3EA 4PUTA 5L43A 4KA7A 4KA8A 1Y791 2O36A
chains in the Genus database with same CATH superfamily
5L43A 2O3EA 1KA2A 1I1IP 3AHOA 3HQ2A 2H1NA 1Y791 2H1JA 3AHMA 3AHNA 1KA4A 3CE2A 4PUTA 4KA8A 5E3XA 1K9XA 3SKSA 1S4BP 5L44A 4FXYP 2QR4A 4KA7A 3DWCA 2O36A 3HOAA
chains in the Genus database with same CATH topology
5L43A 2O3EA 1KA2A 1I1IP 3AHOA 3HQ2A 2H1NA 1Y791 2H1JA 3AHMA 3AHNA 1KA4A 3CE2A 4PUTA 4KA8A 5E3XA 1K9XA 3SKSA 1S4BP 5L44A 4FXYP 4KA7A 2QR4A 3DWCA 2O36A 3HOAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1I1I P;  1S4B P;  5L44 A;  4FXY P;  2O3E A;  4PUT A;  5L43 A;  4KA7 A;  4KA8 A;  1Y79 1;  2O36 A; 
#chains in the Genus database with same CATH topology
 5L43 A;  2O3E A;  1KA2 A;  1I1I P;  3AHO A;  3HQ2 A;  2H1N A;  1Y79 1;  2H1J A;  3AHM A;  3AHN A;  1KA4 A;  3CE2 A;  4PUT A;  4KA8 A;  5E3X A;  1K9X A;  3SKS A;  1S4B P;  5L44 A;  4FXY P;  2QR4 A;  4KA7 A;  3DWC A;  2O36 A;  3HOA A; 
#chains in the Genus database with same CATH homology
 5L43 A;  2O3E A;  1KA2 A;  1I1I P;  3AHO A;  3HQ2 A;  2H1N A;  1Y79 1;  2H1J A;  3AHM A;  3AHN A;  1KA4 A;  3CE2 A;  4PUT A;  4KA8 A;  5E3X A;  1K9X A;  3SKS A;  1S4B P;  5L44 A;  4FXY P;  4KA7 A;  2QR4 A;  3DWC A;  2O36 A;  3HOA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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