4KA8A

Structure of organellar oligopeptidase
Total Genus 269
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
269
sequence length
695
structure length
695
Chain Sequence
SDETLSSNPLLQDFDFPPFDSVDASHVRPGIRALLQHLEAELEELEKSVEPTWPKLVEPLEKIVDRLTVVWGMINHLKAVKDTPELRAAIEDVQPEKVKFQLRLGQSKPIYNAFKAIRESPDWSSLSEARQRLVEAQIKEAVLIGIALDDEKREEFNKIEQELEKLSHKFSENVLDATKKFEKLITDKKEIEGLPPSALGLFAQAAVSKGHENATAENGPWIITLDAPSYLPVMQHAKNRALREEVYRAYLSRASSGDLDNTAIIDQILKLRLEKAKLLGYNNYAEVSMAMKMATVEKAAELLEKLRSASWDAAVQDMEDLKSFAKNQGAAESDSMTHWDTTFWSERLRESKYDINEEELRPYFSLPKVMDGLFSLAKTLFGIDIEPADGLAPVWNNDVRFYRVKDSSGNPIAYFYFDPYSRPSEKRGGAWMDEVVSRSRVMAQKGSSVRLPVAHMVCNQTPPVGDKPSLMTFREVETVFHEFGHALQHMLTKQDEGLVAGIRNIEWDAVELPSQFMENWCYHRDTLMSIAKHYETGETLPEEVYKKLLAARTFRAGSFSLRQLKFASVDLELHTKYVPGGPESIYDVDQRVSVKTQVIPPLPEDRFLCSFSHIFAGGYAAGYYSYKWAEVLSADAFSAFEDAGLDDIKAVKETGQRFRNTILALGGGKAPLKVFVEFRGREPSPEPLLRHNGLL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords Oligopeptidase A
publication title Organellar oligopeptidase (OOP) provides a complementary pathway for targeting peptide degradation in mitochondria and chloroplasts.
pubmed doi rcsb
source organism Arabidopsis thaliana
total genus 269
structure length 695
sequence length 695
ec nomenclature ec 3.4.24.70: Oligopeptidase A.
pdb deposition date 2013-04-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01432 Peptidase_M3 Peptidase family M3
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1370.10 Mainly Alpha Orthogonal Bundle Neurolysin; domain 3 Neurolysin, domain 3 4ka8A02
1.10.1370.40 Mainly Alpha Orthogonal Bundle Neurolysin; domain 3 Neurolysin; domain 3 4ka8A01
1S4BP 2O36A 4KA8A 4KA7A 4FXYP 5L43A 5L44A 1I1IP 4PUTA 2O3EA 1Y791
chains in the Genus database with same CATH superfamily
3DWCA 2H1NA 3AHNA 5L44A 2QR4A 4PUTA 3CE2A 2O36A 3AHOA 2H1JA 1KA2A 1I1IP 1KA4A 2O3EA 3SKSA 1S4BP 3AHMA 1K9XA 3HOAA 4KA8A 4FXYP 5L43A 5E3XA 1Y791 4KA7A 3HQ2A
chains in the Genus database with same CATH topology
3DWCA 2H1NA 3AHNA 5L44A 2QR4A 4PUTA 3CE2A 2O36A 3AHOA 2H1JA 1KA2A 1I1IP 1KA4A 2O3EA 3SKSA 1S4BP 3AHMA 1K9XA 3HOAA 4KA8A 4FXYP 5L43A 5E3XA 1Y791 4KA7A 3HQ2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1S4B P;  2O36 A;  4KA8 A;  4KA7 A;  4FXY P;  5L43 A;  5L44 A;  1I1I P;  4PUT A;  2O3E A;  1Y79 1; 
#chains in the Genus database with same CATH topology
 3DWC A;  2H1N A;  3AHN A;  5L44 A;  2QR4 A;  4PUT A;  3CE2 A;  2O36 A;  3AHO A;  2H1J A;  1KA2 A;  1I1I P;  1KA4 A;  2O3E A;  3SKS A;  1S4B P;  3AHM A;  1K9X A;  3HOA A;  4KA8 A;  4FXY P;  5L43 A;  5E3X A;  1Y79 1;  4KA7 A;  3HQ2 A; 
#chains in the Genus database with same CATH homology
 3DWC A;  2H1N A;  3AHN A;  5L44 A;  2QR4 A;  4PUT A;  3CE2 A;  2O36 A;  3AHO A;  2H1J A;  1KA2 A;  1I1I P;  1KA4 A;  2O3E A;  3SKS A;  1S4B P;  3AHM A;  1K9X A;  3HOA A;  4KA8 A;  4FXY P;  5L43 A;  5E3X A;  1Y79 1;  4KA7 A;  3HQ2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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