4KAVA

Crystal structure of the soluble domain of lipooligosaccharide phosphoethanolamine transferase a from neisseria meningitidis
Total Genus 122
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
122
Knots found
sequence length
334
structure length
333
Chain Sequence
SNIPYTQLDMAVVQNRPAGSLRRFVVLVVGETTRAANWGLNGYSRQTTPLLAARGDEIVNFPQVRSCGTSAHSLPCMFSTFDRTDYDEIKAEHQDNLLDIVQRAGVEVTWLENDSGCKGVCGKVPNTDVTSLNLPEYCRNGECLDNILLTKFDEVLNKNDKDAVLILHTIGSHGPTYYERYTEAERKFTPTCDTNEINKCTRATLVNTYDNTVLYVDQFIDKVIRKLENRDDLESVVHYVSDHGESLGENGMYLHAAPYAIAPSGQTHIPMVMWFSKAFRQHGGIDFQCLKQKAAENEYSHDHYFSTVLGLMDISNSQTYRKEMDILAACRRP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords YhbX/YhjW/YijP/YjdB family protein
publication title The Structure of the Neisserial Lipooligosaccharide Phosphoethanolamine Transferase A (LptA) Required for Resistance to Polymyxin.
pubmed doi rcsb
source organism Neisseria meningitidis
molecule tags Transferase
total genus 122
structure length 333
sequence length 334
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.27: Phosphatidylglycerophosphatase.
pdb deposition date 2013-04-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00884 Sulfatase Sulfatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 4kavA00
1N2KA 1ANJA 3BDGA 1KHJA 3M8ZA 4LRFA 3T02A 4CXKA 3TWZA 2W5TA 2W5RA 5DLWA 1ED9A 1KHLA 5LRNA 1KH5A 2XRGA 1EW2A 5L0EA 1AJBA 2W5VA 4FDIA 1KHKA 5KXAA 2D1GA 2G9YA 5IJQA 1EJJA 3WAVA 1AJAA 1ED8A 3NKPA 2W5XA 3NKMA 1EI6A 1ZEBA 4KJDA 1HQAA 1FSUA 3E2DA 1SHQA 4GTYA 4TN0A 4B56A 5DLVA 4UPIA 3UN2A 2IUCA 4MHXA 1KH9A 4ZG9A 1N2LA 3IDDA 4GTZA 3NKRA 4LRBA 4UPHA 3UN3A 4YR1A 3B5QA 3WAXA 5LQQA 1URBA 2GSUA 3BDFA 3OT9A 2GSOA 4UOOA 1EW9A 1KH7A 5EGHA 5K4PA 3Q3QA 1ANIA 3TG0A 2W5WA 1ELYA 2W5QA 3MK1A 3MK0A 2QZUA 3KD8A 4MY4A 1B8JA 4UPKA 3UNYA 4CXUA 3NKQA 1KH4A 3SZYA 4CYSA 4ZG6A 3A52A 3WBHA 1EW8A 4N7TA 2W8DA 3M8WA 5GRRA 3NKOA 3BDGB 1ELXA 1SHNA 1HDHA 2GSNA 3WAWA 1EQJA 2GA3A 2ZKTA 1K7HA 1O98A 4KAYA 4LR9A 4ZGAA 1ALKA 4CXSA 1AJDA 1ZEFA 1E2SP 5GOVA 3SZZA 3ED4A 5INHA 1ALHA 4GTXA 4QAXA 3UO0A 4NWJA 1AUKA 1O99A 1Y7AA 3NKNA 3WAYA 4FDJA 3T00A 4ZG7A 4KM4A 1E3CP 3IGZB 4UPLA 2XR9A 3CMRA 1HJKA 4LR8A 4CYRA 1ALJA 3DPCA 1P49A 1E1ZP 1AJCA 3M8YA 2W8SA 3TX0A 2IUCB 3IGYB 3M7VA 1ELZA 3BDHA 4LR7A 2W5SA 5TJ3A 3NVLA 5AJ9A 5L0KA 3LXQA 4GTWA 4UORA 5IJSA 5DLTA 4LREA 4UOPA 5C66A 2RH6A 3DYCA 4LRCA 2GLQA 4LRDA 1KHNA 1ALIA 4LQYA 5LRMA 4NWXA 4KAVA 4LRAA 5LIAA 5EGEA 4MIVA 2VQRA 5HRTA 4LR2A 5L0BA 1URAA 1ZEDA 2IFYA 3UN5A 1E33P 2ANHA 3T01A 3MK2A 4KJGA 1Y6VA 2X98A
chains in the Genus database with same CATH superfamily
1N2KA 1ANJA 3BDGA 1KHJA 3M8ZA 4LRFA 3T02A 4CXKA 3TWZA 2W5TA 2W5RA 5DLWA 1ED9A 1KHLA 5LRNA 1KH5A 2XRGA 1EW2A 5L0EA 1AJBA 2W5VA 4FDIA 1KHKA 5KXAA 2D1GA 2G9YA 5IJQA 1EJJA 3WAVA 1AJAA 1ED8A 3NKPA 2W5XA 3NKMA 1EI6A 1ZEBA 4KJDA 1HQAA 1FSUA 3E2DA 1SHQA 4GTYA 4TN0A 4B56A 5DLVA 4UPIA 3UN2A 2IUCA 4MHXA 1KH9A 4ZG9A 1N2LA 3IDDA 4GTZA 3NKRA 4LRBA 4UPHA 3UN3A 4YR1A 3B5QA 3WAXA 5LQQA 1URBA 2GSUA 3BDFA 3OT9A 2GSOA 4UOOA 1EW9A 1KH7A 5EGHA 5K4PA 3Q3QA 1ANIA 3TG0A 2W5WA 1ELYA 2W5QA 3MK1A 3MK0A 2QZUA 3KD8A 4MY4A 1B8JA 4UPKA 3UNYA 4CXUA 3NKQA 1KH4A 3SZYA 4CYSA 4ZG6A 3A52A 3WBHA 1EW8A 4N7TA 2W8DA 3M8WA 5GRRA 3NKOA 3BDGB 1ELXA 1SHNA 1HDHA 2GSNA 3WAWA 1EQJA 2GA3A 2ZKTA 1K7HA 1O98A 4KAYA 4LR9A 4ZGAA 1ALKA 4CXSA 1AJDA 1ZEFA 1E2SP 5GOVA 3SZZA 3ED4A 5INHA 1ALHA 4GTXA 4QAXA 3UO0A 4NWJA 1AUKA 1O99A 1Y7AA 3NKNA 3WAYA 4FDJA 3T00A 4ZG7A 4KM4A 1E3CP 3IGZB 4UPLA 2XR9A 3CMRA 1HJKA 4LR8A 4CYRA 1ALJA 3DPCA 1P49A 1E1ZP 1AJCA 3M8YA 2W8SA 3TX0A 2IUCB 3IGYB 3M7VA 1ELZA 3BDHA 4LR7A 2W5SA 5TJ3A 3NVLA 5AJ9A 5L0KA 3LXQA 4GTWA 4UORA 5IJSA 5DLTA 4LREA 4UOPA 5C66A 2RH6A 3DYCA 4LRCA 2GLQA 4LRDA 1KHNA 1ALIA 4LQYA 5LRMA 4NWXA 4KAVA 4LRAA 5LIAA 5EGEA 4MIVA 2VQRA 5HRTA 4LR2A 5L0BA 1URAA 1ZEDA 2IFYA 3UN5A 1E33P 2ANHA 3T01A 3MK2A 4KJGA 1Y6VA 2X98A
chains in the Genus database with same CATH topology
1N2KA 1ANJA 3BDGA 1KHJA 3M8ZA 4LRFA 3T02A 4CXKA 3TWZA 2W5TA 2W5RA 5DLWA 1ED9A 1KHLA 5LRNA 1KH5A 2XRGA 1EW2A 5L0EA 1AJBA 2W5VA 4FDIA 1KHKA 5KXAA 2D1GA 2G9YA 5IJQA 1EJJA 3WAVA 1AJAA 1ED8A 3NKPA 2W5XA 3NKMA 1EI6A 1ZEBA 4KJDA 1HQAA 1FSUA 3E2DA 1SHQA 4GTYA 4TN0A 4B56A 5DLVA 4UPIA 3UN2A 2IUCA 4MHXA 1KH9A 4ZG9A 1N2LA 3IDDA 4GTZA 3NKRA 4LRBA 4UPHA 3UN3A 4YR1A 3B5QA 3WAXA 5LQQA 1URBA 2GSUA 3BDFA 3OT9A 2GSOA 4UOOA 1EW9A 1KH7A 5EGHA 5K4PA 3Q3QA 1ANIA 3TG0A 2W5WA 1ELYA 2W5QA 3MK1A 3MK0A 2QZUA 3KD8A 4MY4A 1B8JA 4UPKA 3UNYA 4CXUA 3NKQA 1KH4A 3SZYA 4CYSA 4ZG6A 3A52A 3WBHA 1EW8A 4N7TA 2W8DA 3M8WA 5GRRA 3NKOA 3BDGB 1ELXA 1SHNA 1HDHA 2GSNA 3WAWA 1EQJA 2GA3A 2ZKTA 1K7HA 1O98A 4KAYA 4LR9A 4ZGAA 1ALKA 4CXSA 1AJDA 1ZEFA 1E2SP 5GOVA 3SZZA 3ED4A 5INHA 1ALHA 4GTXA 4QAXA 3UO0A 4NWJA 1AUKA 1O99A 1Y7AA 3NKNA 3WAYA 4FDJA 3T00A 4ZG7A 4KM4A 1E3CP 3IGZB 4UPLA 2XR9A 3CMRA 1HJKA 4LR8A 4CYRA 1ALJA 3DPCA 1P49A 1E1ZP 1AJCA 3M8YA 2W8SA 3TX0A 2IUCB 3IGYB 3M7VA 1ELZA 3BDHA 4LR7A 2W5SA 5TJ3A 3NVLA 5AJ9A 5L0KA 3LXQA 4GTWA 4UORA 5IJSA 5DLTA 4LREA 4UOPA 5C66A 2RH6A 3DYCA 4LRCA 2GLQA 4LRDA 1KHNA 1ALIA 4LQYA 5LRMA 4NWXA 4KAVA 4LRAA 5LIAA 5EGEA 4MIVA 2VQRA 5HRTA 4LR2A 5L0BA 1URAA 1ZEDA 2IFYA 3UN5A 1E33P 2ANHA 3T01A 3MK2A 4KJGA 1Y6VA 2X98A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1N2K A;  1ANJ A;  3BDG A;  1KHJ A;  3M8Z A;  4LRF A;  3T02 A;  4CXK A;  3TWZ A;  2W5T A;  2W5R A;  5DLW A;  1ED9 A;  1KHL A;  5LRN A;  1KH5 A;  2XRG A;  1EW2 A;  5L0E A;  1AJB A;  2W5V A;  4FDI A;  1KHK A;  5KXA A;  2D1G A;  2G9Y A;  5IJQ A;  1EJJ A;  3WAV A;  1AJA A;  1ED8 A;  3NKP A;  2W5X A;  3NKM A;  1EI6 A;  1ZEB A;  4KJD A;  1HQA A;  1FSU A;  3E2D A;  1SHQ A;  4GTY A;  4TN0 A;  4B56 A;  5DLV A;  4UPI A;  3UN2 A;  2IUC A;  4MHX A;  1KH9 A;  4ZG9 A;  1N2L A;  3IDD A;  4GTZ A;  3NKR A;  4LRB A;  4UPH A;  3UN3 A;  4YR1 A;  3B5Q A;  3WAX A;  5LQQ A;  1URB A;  2GSU A;  3BDF A;  3OT9 A;  2GSO A;  4UOO A;  1EW9 A;  1KH7 A;  5EGH A;  5K4P A;  3Q3Q A;  1ANI A;  3TG0 A;  2W5W A;  1ELY A;  2W5Q A;  3MK1 A;  3MK0 A;  2QZU A;  3KD8 A;  4MY4 A;  1B8J A;  4UPK A;  3UNY A;  4CXU A;  3NKQ A;  1KH4 A;  3SZY A;  4CYS A;  4ZG6 A;  3A52 A;  3WBH A;  1EW8 A;  4N7T A;  2W8D A;  3M8W A;  5GRR A;  3NKO A;  3BDG B;  1ELX A;  1SHN A;  1HDH A;  2GSN A;  3WAW A;  1EQJ A;  2GA3 A;  2ZKT A;  1K7H A;  1O98 A;  4KAY A;  4LR9 A;  4ZGA A;  1ALK A;  4CXS A;  1AJD A;  1ZEF A;  1E2S P;  5GOV A;  3SZZ A;  3ED4 A;  5INH A;  1ALH A;  4GTX A;  4QAX A;  3UO0 A;  4NWJ A;  1AUK A;  1O99 A;  1Y7A A;  3NKN A;  3WAY A;  4FDJ A;  3T00 A;  4ZG7 A;  4KM4 A;  1E3C P;  3IGZ B;  4UPL A;  2XR9 A;  3CMR A;  1HJK A;  4LR8 A;  4CYR A;  1ALJ A;  3DPC A;  1P49 A;  1E1Z P;  1AJC A;  3M8Y A;  2W8S A;  3TX0 A;  2IUC B;  3IGY B;  3M7V A;  1ELZ A;  3BDH A;  4LR7 A;  2W5S A;  5TJ3 A;  3NVL A;  5AJ9 A;  5L0K A;  3LXQ A;  4GTW A;  4UOR A;  5IJS A;  5DLT A;  4LRE A;  4UOP A;  5C66 A;  2RH6 A;  3DYC A;  4LRC A;  2GLQ A;  4LRD A;  1KHN A;  1ALI A;  4LQY A;  5LRM A;  4NWX A;  4KAV A;  4LRA A;  5LIA A;  5EGE A;  4MIV A;  2VQR A;  5HRT A;  4LR2 A;  5L0B A;  1URA A;  1ZED A;  2IFY A;  3UN5 A;  1E33 P;  2ANH A;  3T01 A;  3MK2 A;  4KJG A;  1Y6V A;  2X98 A; 
#chains in the Genus database with same CATH topology
 1N2K A;  1ANJ A;  3BDG A;  1KHJ A;  3M8Z A;  4LRF A;  3T02 A;  4CXK A;  3TWZ A;  2W5T A;  2W5R A;  5DLW A;  1ED9 A;  1KHL A;  5LRN A;  1KH5 A;  2XRG A;  1EW2 A;  5L0E A;  1AJB A;  2W5V A;  4FDI A;  1KHK A;  5KXA A;  2D1G A;  2G9Y A;  5IJQ A;  1EJJ A;  3WAV A;  1AJA A;  1ED8 A;  3NKP A;  2W5X A;  3NKM A;  1EI6 A;  1ZEB A;  4KJD A;  1HQA A;  1FSU A;  3E2D A;  1SHQ A;  4GTY A;  4TN0 A;  4B56 A;  5DLV A;  4UPI A;  3UN2 A;  2IUC A;  4MHX A;  1KH9 A;  4ZG9 A;  1N2L A;  3IDD A;  4GTZ A;  3NKR A;  4LRB A;  4UPH A;  3UN3 A;  4YR1 A;  3B5Q A;  3WAX A;  5LQQ A;  1URB A;  2GSU A;  3BDF A;  3OT9 A;  2GSO A;  4UOO A;  1EW9 A;  1KH7 A;  5EGH A;  5K4P A;  3Q3Q A;  1ANI A;  3TG0 A;  2W5W A;  1ELY A;  2W5Q A;  3MK1 A;  3MK0 A;  2QZU A;  3KD8 A;  4MY4 A;  1B8J A;  4UPK A;  3UNY A;  4CXU A;  3NKQ A;  1KH4 A;  3SZY A;  4CYS A;  4ZG6 A;  3A52 A;  3WBH A;  1EW8 A;  4N7T A;  2W8D A;  3M8W A;  5GRR A;  3NKO A;  3BDG B;  1ELX A;  1SHN A;  1HDH A;  2GSN A;  3WAW A;  1EQJ A;  2GA3 A;  2ZKT A;  1K7H A;  1O98 A;  4KAY A;  4LR9 A;  4ZGA A;  1ALK A;  4CXS A;  1AJD A;  1ZEF A;  1E2S P;  5GOV A;  3SZZ A;  3ED4 A;  5INH A;  1ALH A;  4GTX A;  4QAX A;  3UO0 A;  4NWJ A;  1AUK A;  1O99 A;  1Y7A A;  3NKN A;  3WAY A;  4FDJ A;  3T00 A;  4ZG7 A;  4KM4 A;  1E3C P;  3IGZ B;  4UPL A;  2XR9 A;  3CMR A;  1HJK A;  4LR8 A;  4CYR A;  1ALJ A;  3DPC A;  1P49 A;  1E1Z P;  1AJC A;  3M8Y A;  2W8S A;  3TX0 A;  2IUC B;  3IGY B;  3M7V A;  1ELZ A;  3BDH A;  4LR7 A;  2W5S A;  5TJ3 A;  3NVL A;  5AJ9 A;  5L0K A;  3LXQ A;  4GTW A;  4UOR A;  5IJS A;  5DLT A;  4LRE A;  4UOP A;  5C66 A;  2RH6 A;  3DYC A;  4LRC A;  2GLQ A;  4LRD A;  1KHN A;  1ALI A;  4LQY A;  5LRM A;  4NWX A;  4KAV A;  4LRA A;  5LIA A;  5EGE A;  4MIV A;  2VQR A;  5HRT A;  4LR2 A;  5L0B A;  1URA A;  1ZED A;  2IFY A;  3UN5 A;  1E33 P;  2ANH A;  3T01 A;  3MK2 A;  4KJG A;  1Y6V A;  2X98 A; 
#chains in the Genus database with same CATH homology
 1N2K A;  1ANJ A;  3BDG A;  1KHJ A;  3M8Z A;  4LRF A;  3T02 A;  4CXK A;  3TWZ A;  2W5T A;  2W5R A;  5DLW A;  1ED9 A;  1KHL A;  5LRN A;  1KH5 A;  2XRG A;  1EW2 A;  5L0E A;  1AJB A;  2W5V A;  4FDI A;  1KHK A;  5KXA A;  2D1G A;  2G9Y A;  5IJQ A;  1EJJ A;  3WAV A;  1AJA A;  1ED8 A;  3NKP A;  2W5X A;  3NKM A;  1EI6 A;  1ZEB A;  4KJD A;  1HQA A;  1FSU A;  3E2D A;  1SHQ A;  4GTY A;  4TN0 A;  4B56 A;  5DLV A;  4UPI A;  3UN2 A;  2IUC A;  4MHX A;  1KH9 A;  4ZG9 A;  1N2L A;  3IDD A;  4GTZ A;  3NKR A;  4LRB A;  4UPH A;  3UN3 A;  4YR1 A;  3B5Q A;  3WAX A;  5LQQ A;  1URB A;  2GSU A;  3BDF A;  3OT9 A;  2GSO A;  4UOO A;  1EW9 A;  1KH7 A;  5EGH A;  5K4P A;  3Q3Q A;  1ANI A;  3TG0 A;  2W5W A;  1ELY A;  2W5Q A;  3MK1 A;  3MK0 A;  2QZU A;  3KD8 A;  4MY4 A;  1B8J A;  4UPK A;  3UNY A;  4CXU A;  3NKQ A;  1KH4 A;  3SZY A;  4CYS A;  4ZG6 A;  3A52 A;  3WBH A;  1EW8 A;  4N7T A;  2W8D A;  3M8W A;  5GRR A;  3NKO A;  3BDG B;  1ELX A;  1SHN A;  1HDH A;  2GSN A;  3WAW A;  1EQJ A;  2GA3 A;  2ZKT A;  1K7H A;  1O98 A;  4KAY A;  4LR9 A;  4ZGA A;  1ALK A;  4CXS A;  1AJD A;  1ZEF A;  1E2S P;  5GOV A;  3SZZ A;  3ED4 A;  5INH A;  1ALH A;  4GTX A;  4QAX A;  3UO0 A;  4NWJ A;  1AUK A;  1O99 A;  1Y7A A;  3NKN A;  3WAY A;  4FDJ A;  3T00 A;  4ZG7 A;  4KM4 A;  1E3C P;  3IGZ B;  4UPL A;  2XR9 A;  3CMR A;  1HJK A;  4LR8 A;  4CYR A;  1ALJ A;  3DPC A;  1P49 A;  1E1Z P;  1AJC A;  3M8Y A;  2W8S A;  3TX0 A;  2IUC B;  3IGY B;  3M7V A;  1ELZ A;  3BDH A;  4LR7 A;  2W5S A;  5TJ3 A;  3NVL A;  5AJ9 A;  5L0K A;  3LXQ A;  4GTW A;  4UOR A;  5IJS A;  5DLT A;  4LRE A;  4UOP A;  5C66 A;  2RH6 A;  3DYC A;  4LRC A;  2GLQ A;  4LRD A;  1KHN A;  1ALI A;  4LQY A;  5LRM A;  4NWX A;  4KAV A;  4LRA A;  5LIA A;  5EGE A;  4MIV A;  2VQR A;  5HRT A;  4LR2 A;  5L0B A;  1URA A;  1ZED A;  2IFY A;  3UN5 A;  1E33 P;  2ANH A;  3T01 A;  3MK2 A;  4KJG A;  1Y6V A;  2X98 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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