4KAVA

Crystal structure of the soluble domain of lipooligosaccharide phosphoethanolamine transferase a from neisseria meningitidis
Total Genus 122
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
122
Knots found
sequence length
334
structure length
333
Chain Sequence
b'SNIPYTQLDMAVVQNRPAGSLRRFVVLVVGETTRAANWGLNGYSRQTTPLLAARGDEIVNFPQVRSCGTSAHSLPCMFSTFDRTDYDEIKAEHQDNLLDIVQRAGVEVTWLENDSGCKGVCGKVPNTDVTSLNLPEYCRNGECLDNILLTKFDEVLNKNDKDAVLILHTIGSHGPTYYERYTEAERKFTPTCDTNEINKCTRATLVNTYDNTVLYVDQFIDKVIRKLENRDDLESVVHYVSDHGESLGENGMYLHAAPYAIAPSGQTHIPMVMWFSKAFRQHGGIDFQCLKQKAAENEYSHDHYFSTVLGLMDISNSQTYRKEMDILAACRRP'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords YhbX/YhjW/YijP/YjdB family protein
publication title The Structure of the Neisserial Lipooligosaccharide Phosphoethanolamine Transferase A (LptA) Required for Resistance to Polymyxin.
pubmed doi rcsb
source organism Neisseria meningitidis
molecule tags Transferase
total genus 122
structure length 333
sequence length 334
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.27: Phosphatidylglycerophosphatase.
pdb deposition date 2013-04-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00884 Sulfatase Sulfatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 4kavA00
3SZYA 1URBA 5LRNA 5LQQA 1ZEFA 1HJKA 2GLQA 3UO0A 1URAA 1Y7AA 1AJBA 5DLVA 1N2LA 3WAWA 4UPKA 5EGHA 3MK1A 4QAXA 1KH4A 4KAVA 4LRFA 2W8DA 1EW2A 1N2KA 3M8ZA 4UPLA 2GSNA 3MK0A 2GA3A 2W5TA 4CYRA 4CXKA 1ALIA 3NKMA 3MK2A 4B56A 3T02A 1SHNA 1ANIA 3OT9A 3BDFA 2QZUA 3SZZA 1ALHA 1EJJA 2RH6A 4LR7A 2W5RA 3M7VA 4LR8A 5DLWA 3IGZB 5IJQA 3WAXA 4TN0A 4ZG9A 2W8SA 1B8JA 1O99A 4KJGA 4ZG6A 4CYSA 3KD8A 4KJDA 1SHQA 3BDHA 1ZEBA 3UN5A 3NKPA 1KHKA 5HRTA 2GSOA 4LRDA 1KHLA 3LXQA 4GTYA 4KAYA 5GRRA 1EQJA 2G9YA 4N7TA 4UPIA 4NWJA 1ALJA 5DLTA 3UN3A 3UNYA 2IUCA 4UOPA 1ANJA 1ELXA 1O98A 2XRGA 3E2DA 4FDIA 4NWXA 3TWZA 1ELZA 5L0BA 4ZG7A 3IGYB 2X98A 2GSUA 3DPCA 3TG0A 1EW8A 3T01A 2IUCB 3UN2A 3BDGA 5LIAA 4ZGAA 2ANHA 4LRBA 4LRAA 2XR9A 4LRCA 4LREA 3NVLA 1ED9A 2W5QA 3NKRA 4LQYA 1EW9A 5AJ9A 1HDHA 5L0KA 2W5VA 5L0EA 1HQAA 3BDGB 1E3CP 1FSUA 4FDJA 3DYCA 3WAYA 1AJAA 2W5SA 3NKNA 4UPHA 1E2SP 5C66A 4GTXA 2ZKTA 1KHNA 1EI6A 1K7HA 2D1GA 3T00A 4MIVA 2VQRA 4GTZA 1AJCA 4UOOA 4GTWA 4YR1A 3WBHA 3M8YA 1AJDA 4MHXA 3NKOA 4KM4A 5GOVA 1ALKA 1ELYA 3TX0A 3WAVA 3B5QA 1KHJA 1ZEDA 1E33P 5EGEA 3ED4A 3A52A 3CMRA 5IJSA 1KH7A 1AUKA 5LRMA 2W5XA 5K4PA 2W5WA 1Y6VA 4LR2A 2IFYA 3M8WA 4LR9A 4MY4A 5TJ3A 4CXUA 5KXAA 4UORA 1P49A 1KH5A 4CXSA 3NKQA 1ED8A 3IDDA 3Q3QA 1E1ZP 1KH9A 5INHA
chains in the Genus database with same CATH superfamily
3SZYA 1URBA 5LRNA 5LQQA 1ZEFA 1HJKA 2GLQA 3UO0A 1URAA 1Y7AA 1AJBA 5DLVA 1N2LA 3WAWA 4UPKA 5EGHA 3MK1A 4QAXA 1KH4A 4KAVA 4LRFA 2W8DA 1EW2A 1N2KA 3M8ZA 4UPLA 2GSNA 3MK0A 2GA3A 2W5TA 4CYRA 4CXKA 1ALIA 3NKMA 3MK2A 4B56A 3T02A 1SHNA 1ANIA 3OT9A 3BDFA 2QZUA 3SZZA 1ALHA 1EJJA 2RH6A 4LR7A 2W5RA 3M7VA 4LR8A 5DLWA 3IGZB 5IJQA 3WAXA 4TN0A 4ZG9A 2W8SA 1B8JA 1O99A 4KJGA 4ZG6A 4CYSA 3KD8A 4KJDA 1SHQA 3BDHA 1ZEBA 3UN5A 3NKPA 1KHKA 5HRTA 2GSOA 4LRDA 1KHLA 3LXQA 4GTYA 4KAYA 5GRRA 1EQJA 2G9YA 4N7TA 4UPIA 4NWJA 1ALJA 5DLTA 3UN3A 3UNYA 2IUCA 4UOPA 1ANJA 1ELXA 1O98A 2XRGA 3E2DA 4FDIA 4NWXA 3TWZA 1ELZA 5L0BA 4ZG7A 3IGYB 2X98A 2GSUA 3DPCA 3TG0A 1EW8A 3T01A 2IUCB 3UN2A 3BDGA 5LIAA 4ZGAA 2ANHA 4LRBA 4LRAA 2XR9A 4LRCA 4LREA 3NVLA 1ED9A 2W5QA 3NKRA 4LQYA 1EW9A 5AJ9A 1HDHA 5L0KA 2W5VA 5L0EA 1HQAA 3BDGB 1E3CP 1FSUA 4FDJA 3DYCA 3WAYA 1AJAA 2W5SA 3NKNA 4UPHA 1E2SP 5C66A 4GTXA 2ZKTA 1KHNA 1EI6A 1K7HA 2D1GA 3T00A 4MIVA 2VQRA 4GTZA 1AJCA 4UOOA 4GTWA 4YR1A 3WBHA 3M8YA 1AJDA 4MHXA 3NKOA 4KM4A 5GOVA 1ALKA 1ELYA 3TX0A 3WAVA 3B5QA 1KHJA 1ZEDA 1E33P 5EGEA 3ED4A 3A52A 3CMRA 5IJSA 1KH7A 1AUKA 5LRMA 2W5XA 5K4PA 2W5WA 1Y6VA 4LR2A 2IFYA 3M8WA 4LR9A 4MY4A 5TJ3A 4CXUA 5KXAA 4UORA 1P49A 1KH5A 4CXSA 3NKQA 1ED8A 3IDDA 3Q3QA 1E1ZP 1KH9A 5INHA
chains in the Genus database with same CATH topology
3SZYA 1URBA 5LRNA 5LQQA 1ZEFA 1HJKA 2GLQA 3UO0A 1URAA 1Y7AA 1AJBA 5DLVA 1N2LA 3WAWA 4UPKA 5EGHA 3MK1A 4QAXA 1KH4A 4KAVA 4LRFA 2W8DA 1EW2A 1N2KA 3M8ZA 4UPLA 2GSNA 3MK0A 2GA3A 2W5TA 4CYRA 4CXKA 1ALIA 3NKMA 3MK2A 4B56A 3T02A 1SHNA 1ANIA 3OT9A 3BDFA 2QZUA 3SZZA 1ALHA 1EJJA 2RH6A 4LR7A 2W5RA 3M7VA 4LR8A 5DLWA 3IGZB 5IJQA 3WAXA 4TN0A 4ZG9A 2W8SA 1B8JA 1O99A 4KJGA 4ZG6A 4CYSA 3KD8A 4KJDA 1SHQA 3BDHA 1ZEBA 3UN5A 3NKPA 1KHKA 5HRTA 2GSOA 4LRDA 1KHLA 3LXQA 4GTYA 4KAYA 5GRRA 1EQJA 2G9YA 4N7TA 4UPIA 4NWJA 1ALJA 5DLTA 3UN3A 3UNYA 2IUCA 4UOPA 1ANJA 1ELXA 1O98A 2XRGA 3E2DA 4FDIA 4NWXA 3TWZA 1ELZA 5L0BA 4ZG7A 3IGYB 2X98A 2GSUA 3DPCA 3TG0A 1EW8A 3T01A 2IUCB 3UN2A 3BDGA 5LIAA 4ZGAA 2ANHA 4LRBA 4LRAA 2XR9A 4LRCA 4LREA 3NVLA 1ED9A 2W5QA 3NKRA 4LQYA 1EW9A 5AJ9A 1HDHA 5L0KA 2W5VA 5L0EA 1HQAA 3BDGB 1E3CP 1FSUA 4FDJA 3DYCA 3WAYA 1AJAA 2W5SA 3NKNA 4UPHA 1E2SP 5C66A 4GTXA 2ZKTA 1KHNA 1EI6A 1K7HA 2D1GA 3T00A 4MIVA 2VQRA 4GTZA 1AJCA 4UOOA 4GTWA 4YR1A 3WBHA 3M8YA 1AJDA 4MHXA 3NKOA 4KM4A 5GOVA 1ALKA 1ELYA 3TX0A 3WAVA 3B5QA 1KHJA 1ZEDA 1E33P 5EGEA 3ED4A 3A52A 3CMRA 5IJSA 1KH7A 1AUKA 5LRMA 2W5XA 5K4PA 2W5WA 1Y6VA 4LR2A 2IFYA 3M8WA 4LR9A 4MY4A 5TJ3A 4CXUA 5KXAA 4UORA 1P49A 1KH5A 4CXSA 3NKQA 1ED8A 3IDDA 3Q3QA 1E1ZP 1KH9A 5INHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SZY A;  1URB A;  5LRN A;  5LQQ A;  1ZEF A;  1HJK A;  2GLQ A;  3UO0 A;  1URA A;  1Y7A A;  1AJB A;  5DLV A;  1N2L A;  3WAW A;  4UPK A;  5EGH A;  3MK1 A;  4QAX A;  1KH4 A;  4KAV A;  4LRF A;  2W8D A;  1EW2 A;  1N2K A;  3M8Z A;  4UPL A;  2GSN A;  3MK0 A;  2GA3 A;  2W5T A;  4CYR A;  4CXK A;  1ALI A;  3NKM A;  3MK2 A;  4B56 A;  3T02 A;  1SHN A;  1ANI A;  3OT9 A;  3BDF A;  2QZU A;  3SZZ A;  1ALH A;  1EJJ A;  2RH6 A;  4LR7 A;  2W5R A;  3M7V A;  4LR8 A;  5DLW A;  3IGZ B;  5IJQ A;  3WAX A;  4TN0 A;  4ZG9 A;  2W8S A;  1B8J A;  1O99 A;  4KJG A;  4ZG6 A;  4CYS A;  3KD8 A;  4KJD A;  1SHQ A;  3BDH A;  1ZEB A;  3UN5 A;  3NKP A;  1KHK A;  5HRT A;  2GSO A;  4LRD A;  1KHL A;  3LXQ A;  4GTY A;  4KAY A;  5GRR A;  1EQJ A;  2G9Y A;  4N7T A;  4UPI A;  4NWJ A;  1ALJ A;  5DLT A;  3UN3 A;  3UNY A;  2IUC A;  4UOP A;  1ANJ A;  1ELX A;  1O98 A;  2XRG A;  3E2D A;  4FDI A;  4NWX A;  3TWZ A;  1ELZ A;  5L0B A;  4ZG7 A;  3IGY B;  2X98 A;  2GSU A;  3DPC A;  3TG0 A;  1EW8 A;  3T01 A;  2IUC B;  3UN2 A;  3BDG A;  5LIA A;  4ZGA A;  2ANH A;  4LRB A;  4LRA A;  2XR9 A;  4LRC A;  4LRE A;  3NVL A;  1ED9 A;  2W5Q A;  3NKR A;  4LQY A;  1EW9 A;  5AJ9 A;  1HDH A;  5L0K A;  2W5V A;  5L0E A;  1HQA A;  3BDG B;  1E3C P;  1FSU A;  4FDJ A;  3DYC A;  3WAY A;  1AJA A;  2W5S A;  3NKN A;  4UPH A;  1E2S P;  5C66 A;  4GTX A;  2ZKT A;  1KHN A;  1EI6 A;  1K7H A;  2D1G A;  3T00 A;  4MIV A;  2VQR A;  4GTZ A;  1AJC A;  4UOO A;  4GTW A;  4YR1 A;  3WBH A;  3M8Y A;  1AJD A;  4MHX A;  3NKO A;  4KM4 A;  5GOV A;  1ALK A;  1ELY A;  3TX0 A;  3WAV A;  3B5Q A;  1KHJ A;  1ZED A;  1E33 P;  5EGE A;  3ED4 A;  3A52 A;  3CMR A;  5IJS A;  1KH7 A;  1AUK A;  5LRM A;  2W5X A;  5K4P A;  2W5W A;  1Y6V A;  4LR2 A;  2IFY A;  3M8W A;  4LR9 A;  4MY4 A;  5TJ3 A;  4CXU A;  5KXA A;  4UOR A;  1P49 A;  1KH5 A;  4CXS A;  3NKQ A;  1ED8 A;  3IDD A;  3Q3Q A;  1E1Z P;  1KH9 A;  5INH A; 
#chains in the Genus database with same CATH topology
 3SZY A;  1URB A;  5LRN A;  5LQQ A;  1ZEF A;  1HJK A;  2GLQ A;  3UO0 A;  1URA A;  1Y7A A;  1AJB A;  5DLV A;  1N2L A;  3WAW A;  4UPK A;  5EGH A;  3MK1 A;  4QAX A;  1KH4 A;  4KAV A;  4LRF A;  2W8D A;  1EW2 A;  1N2K A;  3M8Z A;  4UPL A;  2GSN A;  3MK0 A;  2GA3 A;  2W5T A;  4CYR A;  4CXK A;  1ALI A;  3NKM A;  3MK2 A;  4B56 A;  3T02 A;  1SHN A;  1ANI A;  3OT9 A;  3BDF A;  2QZU A;  3SZZ A;  1ALH A;  1EJJ A;  2RH6 A;  4LR7 A;  2W5R A;  3M7V A;  4LR8 A;  5DLW A;  3IGZ B;  5IJQ A;  3WAX A;  4TN0 A;  4ZG9 A;  2W8S A;  1B8J A;  1O99 A;  4KJG A;  4ZG6 A;  4CYS A;  3KD8 A;  4KJD A;  1SHQ A;  3BDH A;  1ZEB A;  3UN5 A;  3NKP A;  1KHK A;  5HRT A;  2GSO A;  4LRD A;  1KHL A;  3LXQ A;  4GTY A;  4KAY A;  5GRR A;  1EQJ A;  2G9Y A;  4N7T A;  4UPI A;  4NWJ A;  1ALJ A;  5DLT A;  3UN3 A;  3UNY A;  2IUC A;  4UOP A;  1ANJ A;  1ELX A;  1O98 A;  2XRG A;  3E2D A;  4FDI A;  4NWX A;  3TWZ A;  1ELZ A;  5L0B A;  4ZG7 A;  3IGY B;  2X98 A;  2GSU A;  3DPC A;  3TG0 A;  1EW8 A;  3T01 A;  2IUC B;  3UN2 A;  3BDG A;  5LIA A;  4ZGA A;  2ANH A;  4LRB A;  4LRA A;  2XR9 A;  4LRC A;  4LRE A;  3NVL A;  1ED9 A;  2W5Q A;  3NKR A;  4LQY A;  1EW9 A;  5AJ9 A;  1HDH A;  5L0K A;  2W5V A;  5L0E A;  1HQA A;  3BDG B;  1E3C P;  1FSU A;  4FDJ A;  3DYC A;  3WAY A;  1AJA A;  2W5S A;  3NKN A;  4UPH A;  1E2S P;  5C66 A;  4GTX A;  2ZKT A;  1KHN A;  1EI6 A;  1K7H A;  2D1G A;  3T00 A;  4MIV A;  2VQR A;  4GTZ A;  1AJC A;  4UOO A;  4GTW A;  4YR1 A;  3WBH A;  3M8Y A;  1AJD A;  4MHX A;  3NKO A;  4KM4 A;  5GOV A;  1ALK A;  1ELY A;  3TX0 A;  3WAV A;  3B5Q A;  1KHJ A;  1ZED A;  1E33 P;  5EGE A;  3ED4 A;  3A52 A;  3CMR A;  5IJS A;  1KH7 A;  1AUK A;  5LRM A;  2W5X A;  5K4P A;  2W5W A;  1Y6V A;  4LR2 A;  2IFY A;  3M8W A;  4LR9 A;  4MY4 A;  5TJ3 A;  4CXU A;  5KXA A;  4UOR A;  1P49 A;  1KH5 A;  4CXS A;  3NKQ A;  1ED8 A;  3IDD A;  3Q3Q A;  1E1Z P;  1KH9 A;  5INH A; 
#chains in the Genus database with same CATH homology
 3SZY A;  1URB A;  5LRN A;  5LQQ A;  1ZEF A;  1HJK A;  2GLQ A;  3UO0 A;  1URA A;  1Y7A A;  1AJB A;  5DLV A;  1N2L A;  3WAW A;  4UPK A;  5EGH A;  3MK1 A;  4QAX A;  1KH4 A;  4KAV A;  4LRF A;  2W8D A;  1EW2 A;  1N2K A;  3M8Z A;  4UPL A;  2GSN A;  3MK0 A;  2GA3 A;  2W5T A;  4CYR A;  4CXK A;  1ALI A;  3NKM A;  3MK2 A;  4B56 A;  3T02 A;  1SHN A;  1ANI A;  3OT9 A;  3BDF A;  2QZU A;  3SZZ A;  1ALH A;  1EJJ A;  2RH6 A;  4LR7 A;  2W5R A;  3M7V A;  4LR8 A;  5DLW A;  3IGZ B;  5IJQ A;  3WAX A;  4TN0 A;  4ZG9 A;  2W8S A;  1B8J A;  1O99 A;  4KJG A;  4ZG6 A;  4CYS A;  3KD8 A;  4KJD A;  1SHQ A;  3BDH A;  1ZEB A;  3UN5 A;  3NKP A;  1KHK A;  5HRT A;  2GSO A;  4LRD A;  1KHL A;  3LXQ A;  4GTY A;  4KAY A;  5GRR A;  1EQJ A;  2G9Y A;  4N7T A;  4UPI A;  4NWJ A;  1ALJ A;  5DLT A;  3UN3 A;  3UNY A;  2IUC A;  4UOP A;  1ANJ A;  1ELX A;  1O98 A;  2XRG A;  3E2D A;  4FDI A;  4NWX A;  3TWZ A;  1ELZ A;  5L0B A;  4ZG7 A;  3IGY B;  2X98 A;  2GSU A;  3DPC A;  3TG0 A;  1EW8 A;  3T01 A;  2IUC B;  3UN2 A;  3BDG A;  5LIA A;  4ZGA A;  2ANH A;  4LRB A;  4LRA A;  2XR9 A;  4LRC A;  4LRE A;  3NVL A;  1ED9 A;  2W5Q A;  3NKR A;  4LQY A;  1EW9 A;  5AJ9 A;  1HDH A;  5L0K A;  2W5V A;  5L0E A;  1HQA A;  3BDG B;  1E3C P;  1FSU A;  4FDJ A;  3DYC A;  3WAY A;  1AJA A;  2W5S A;  3NKN A;  4UPH A;  1E2S P;  5C66 A;  4GTX A;  2ZKT A;  1KHN A;  1EI6 A;  1K7H A;  2D1G A;  3T00 A;  4MIV A;  2VQR A;  4GTZ A;  1AJC A;  4UOO A;  4GTW A;  4YR1 A;  3WBH A;  3M8Y A;  1AJD A;  4MHX A;  3NKO A;  4KM4 A;  5GOV A;  1ALK A;  1ELY A;  3TX0 A;  3WAV A;  3B5Q A;  1KHJ A;  1ZED A;  1E33 P;  5EGE A;  3ED4 A;  3A52 A;  3CMR A;  5IJS A;  1KH7 A;  1AUK A;  5LRM A;  2W5X A;  5K4P A;  2W5W A;  1Y6V A;  4LR2 A;  2IFY A;  3M8W A;  4LR9 A;  4MY4 A;  5TJ3 A;  4CXU A;  5KXA A;  4UOR A;  1P49 A;  1KH5 A;  4CXS A;  3NKQ A;  1ED8 A;  3IDD A;  3Q3Q A;  1E1Z P;  1KH9 A;  5INH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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