4KAYA

Structure of the soluble domain of lipooligosaccharide phosphoethanolamine transferase a from neisseria meningitidis - complex with zn
Total Genus 121
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
121
Knots found
sequence length
333
structure length
331
Chain Sequence
NIPYTQLDMAVVQNRPAGSLRRFVVLVVGETTRAANWGLNGYSRQTTPLLAARGDEIVNFPQVRSCGTSAHSLPCMFSTFDRTDYDEIKAEHQDNLLDIVQRAGVEVTWLENDSGCKGVCGKVPNTDVTSLNLPEYCRNGECLDNILLTKFDEVLNKNDKDAVLILHTIGSHGPTYYERYTEAERKFTPTCDTNEINKCTATLVNTYDNTVLYVDQFIDKVIRKLENRDDLESVVHYVSDHGESLGENGMYLHAAPYAIAPSGQTHIPMVMWFSKAFRQHGGIDFQCLKQKAAENEYSHDHYFSTVLGLMDISNSQTYRKEMDILAACRRP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords YhbX/YhjW/YijP/YjdB family protein
publication title The Structure of the Neisserial Lipooligosaccharide Phosphoethanolamine Transferase A (LptA) Required for Resistance to Polymyxin.
pubmed doi rcsb
source organism Neisseria meningitidis
molecule tags Transferase
total genus 121
structure length 331
sequence length 333
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.27: Phosphatidylglycerophosphatase.
pdb deposition date 2013-04-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00884 Sulfatase Sulfatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 4kayA00
4UORA 1Y6VA 1EW9A 3MK0A 4KM4A 1ALIA 1E1ZP 3NKMA 4LRFA 2VQRA 4UOPA 3WAWA 3BDFA 1ALJA 2W8SA 5AJ9A 4YR1A 4LRCA 5LQQA 3M8WA 5INHA 4N7TA 1KH7A 1P49A 3BDGB 2IFYA 1ANJA 4MY4A 5LIAA 3UN3A 2GSNA 3WBHA 1EJJA 3TG0A 5KXAA 1KH9A 2GA3A 3WAXA 5L0EA 4ZG6A 1HDHA 1AUKA 3T00A 3UN2A 2W5RA 1O99A 4UPHA 4ZG7A 2GLQA 4KJGA 5DLVA 5EGHA 3NKQA 1SHQA 3MK1A 1ALKA 4LR2A 1URAA 2W5VA 2IUCA 2W5SA 3SZYA 1HJKA 2ANHA 1ZEBA 4UOOA 5LRNA 2W5XA 3NVLA 4LRDA 1E2SP 1E33P 4LR9A 4LRAA 1KHKA 3ED4A 3NKOA 3LXQA 4KAVA 3IGYB 4UPIA 4CXUA 4LREA 3T02A 4ZG9A 4TN0A 3Q3QA 1KHLA 4NWXA 1EQJA 1EI6A 1N2LA 3NKNA 3UO0A 3MK2A 1SHNA 3KD8A 1ANIA 3BDGA 4GTYA 4MHXA 3UNYA 1EW2A 2ZKTA 1AJCA 5HRTA 3M8YA 2QZUA 1AJBA 1N2KA 1ED8A 3DYCA 2X98A 3IGZB 1ZEDA 4LR7A 3B5QA 5LRMA 3M8ZA 1KH5A 3WAYA 3WAVA 1ELZA 1HQAA 2XRGA 1AJAA 3M7VA 4FDIA 4FDJA 4KJDA 3IDDA 2W5TA 4CXKA 2GSUA 3TX0A 2W5QA 4NWJA 2W5WA 3NKRA 5TJ3A 5GOVA 4GTZA 4UPKA 1KHJA 1ED9A 3OT9A 5C66A 1KH4A 1KHNA 3BDHA 4LRBA 4UPLA 5L0BA 2W8DA 4CXSA 5DLTA 2RH6A 1K7HA 4GTXA 4CYSA 5GRRA 1B8JA 4QAXA 1ZEFA 4B56A 4CYRA 5EGEA 3T01A 5K4PA 5IJQA 3SZZA 2G9YA 1URBA 4LR8A 4MIVA 3CMRA 2GSOA 3E2DA 5DLWA 5L0KA 1ELYA 1ELXA 3NKPA 1AJDA 3A52A 3DPCA 2XR9A 1Y7AA 4ZGAA 2IUCB 1ALHA 1E3CP 1FSUA 2D1GA 3UN5A 5IJSA 1O98A 3TWZA 4LQYA 1EW8A 4KAYA 4GTWA
chains in the Genus database with same CATH superfamily
4UORA 1Y6VA 1EW9A 3MK0A 4KM4A 1ALIA 1E1ZP 3NKMA 4LRFA 2VQRA 4UOPA 3WAWA 3BDFA 1ALJA 2W8SA 5AJ9A 4YR1A 4LRCA 5LQQA 3M8WA 5INHA 4N7TA 1KH7A 1P49A 3BDGB 2IFYA 1ANJA 4MY4A 5LIAA 3UN3A 2GSNA 3WBHA 1EJJA 3TG0A 5KXAA 1KH9A 2GA3A 3WAXA 5L0EA 4ZG6A 1HDHA 1AUKA 3T00A 3UN2A 2W5RA 1O99A 4UPHA 4ZG7A 2GLQA 4KJGA 5DLVA 5EGHA 3NKQA 1SHQA 3MK1A 1ALKA 4LR2A 1URAA 2W5VA 2IUCA 2W5SA 3SZYA 1HJKA 2ANHA 1ZEBA 4UOOA 5LRNA 2W5XA 3NVLA 4LRDA 1E2SP 1E33P 4LR9A 4LRAA 1KHKA 3ED4A 3NKOA 3LXQA 4KAVA 3IGYB 4UPIA 4CXUA 4LREA 3T02A 4ZG9A 4TN0A 3Q3QA 1KHLA 4NWXA 1EQJA 1EI6A 1N2LA 3NKNA 3UO0A 3MK2A 1SHNA 3KD8A 1ANIA 3BDGA 4GTYA 4MHXA 3UNYA 1EW2A 2ZKTA 1AJCA 5HRTA 3M8YA 2QZUA 1AJBA 1N2KA 1ED8A 3DYCA 2X98A 3IGZB 1ZEDA 4LR7A 3B5QA 5LRMA 3M8ZA 1KH5A 3WAYA 3WAVA 1ELZA 1HQAA 2XRGA 1AJAA 3M7VA 4FDIA 4FDJA 4KJDA 3IDDA 2W5TA 4CXKA 2GSUA 3TX0A 2W5QA 4NWJA 2W5WA 3NKRA 5TJ3A 5GOVA 4GTZA 4UPKA 1KHJA 1ED9A 3OT9A 5C66A 1KH4A 1KHNA 3BDHA 4LRBA 4UPLA 5L0BA 2W8DA 4CXSA 5DLTA 2RH6A 1K7HA 4GTXA 4CYSA 5GRRA 1B8JA 4QAXA 1ZEFA 4B56A 4CYRA 5EGEA 3T01A 5K4PA 5IJQA 3SZZA 2G9YA 1URBA 4LR8A 4MIVA 3CMRA 2GSOA 3E2DA 5DLWA 5L0KA 1ELYA 1ELXA 3NKPA 1AJDA 3A52A 3DPCA 2XR9A 1Y7AA 4ZGAA 2IUCB 1ALHA 1E3CP 1FSUA 2D1GA 3UN5A 5IJSA 1O98A 3TWZA 4LQYA 1EW8A 4KAYA 4GTWA
chains in the Genus database with same CATH topology
4UORA 1Y6VA 1EW9A 3MK0A 4KM4A 1ALIA 1E1ZP 3NKMA 4LRFA 2VQRA 4UOPA 3WAWA 3BDFA 1ALJA 2W8SA 5AJ9A 4YR1A 4LRCA 5LQQA 3M8WA 5INHA 4N7TA 1KH7A 1P49A 3BDGB 2IFYA 1ANJA 4MY4A 5LIAA 3UN3A 2GSNA 3WBHA 1EJJA 3TG0A 5KXAA 1KH9A 2GA3A 3WAXA 5L0EA 4ZG6A 1HDHA 1AUKA 3T00A 3UN2A 2W5RA 1O99A 4UPHA 4ZG7A 2GLQA 4KJGA 5DLVA 5EGHA 3NKQA 1SHQA 3MK1A 1ALKA 4LR2A 1URAA 2W5VA 2IUCA 2W5SA 3SZYA 1HJKA 2ANHA 1ZEBA 4UOOA 5LRNA 2W5XA 3NVLA 4LRDA 1E2SP 1E33P 4LR9A 4LRAA 1KHKA 3ED4A 3NKOA 3LXQA 4KAVA 3IGYB 4UPIA 4CXUA 4LREA 3T02A 4ZG9A 4TN0A 3Q3QA 1KHLA 4NWXA 1EQJA 1EI6A 1N2LA 3NKNA 3UO0A 3MK2A 1SHNA 3KD8A 1ANIA 3BDGA 4GTYA 4MHXA 3UNYA 1EW2A 2ZKTA 1AJCA 5HRTA 3M8YA 2QZUA 1AJBA 1N2KA 1ED8A 3DYCA 2X98A 3IGZB 1ZEDA 4LR7A 3B5QA 5LRMA 3M8ZA 1KH5A 3WAYA 3WAVA 1ELZA 1HQAA 2XRGA 1AJAA 3M7VA 4FDIA 4FDJA 4KJDA 3IDDA 2W5TA 4CXKA 2GSUA 3TX0A 2W5QA 4NWJA 2W5WA 3NKRA 5TJ3A 5GOVA 4GTZA 4UPKA 1KHJA 1ED9A 3OT9A 5C66A 1KH4A 1KHNA 3BDHA 4LRBA 4UPLA 5L0BA 2W8DA 4CXSA 5DLTA 2RH6A 1K7HA 4GTXA 4CYSA 5GRRA 1B8JA 4QAXA 1ZEFA 4B56A 4CYRA 5EGEA 3T01A 5K4PA 5IJQA 3SZZA 2G9YA 1URBA 4LR8A 4MIVA 3CMRA 2GSOA 3E2DA 5DLWA 5L0KA 1ELYA 1ELXA 3NKPA 1AJDA 3A52A 3DPCA 2XR9A 1Y7AA 4ZGAA 2IUCB 1ALHA 1E3CP 1FSUA 2D1GA 3UN5A 5IJSA 1O98A 3TWZA 4LQYA 1EW8A 4KAYA 4GTWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4UOR A;  1Y6V A;  1EW9 A;  3MK0 A;  4KM4 A;  1ALI A;  1E1Z P;  3NKM A;  4LRF A;  2VQR A;  4UOP A;  3WAW A;  3BDF A;  1ALJ A;  2W8S A;  5AJ9 A;  4YR1 A;  4LRC A;  5LQQ A;  3M8W A;  5INH A;  4N7T A;  1KH7 A;  1P49 A;  3BDG B;  2IFY A;  1ANJ A;  4MY4 A;  5LIA A;  3UN3 A;  2GSN A;  3WBH A;  1EJJ A;  3TG0 A;  5KXA A;  1KH9 A;  2GA3 A;  3WAX A;  5L0E A;  4ZG6 A;  1HDH A;  1AUK A;  3T00 A;  3UN2 A;  2W5R A;  1O99 A;  4UPH A;  4ZG7 A;  2GLQ A;  4KJG A;  5DLV A;  5EGH A;  3NKQ A;  1SHQ A;  3MK1 A;  1ALK A;  4LR2 A;  1URA A;  2W5V A;  2IUC A;  2W5S A;  3SZY A;  1HJK A;  2ANH A;  1ZEB A;  4UOO A;  5LRN A;  2W5X A;  3NVL A;  4LRD A;  1E2S P;  1E33 P;  4LR9 A;  4LRA A;  1KHK A;  3ED4 A;  3NKO A;  3LXQ A;  4KAV A;  3IGY B;  4UPI A;  4CXU A;  4LRE A;  3T02 A;  4ZG9 A;  4TN0 A;  3Q3Q A;  1KHL A;  4NWX A;  1EQJ A;  1EI6 A;  1N2L A;  3NKN A;  3UO0 A;  3MK2 A;  1SHN A;  3KD8 A;  1ANI A;  3BDG A;  4GTY A;  4MHX A;  3UNY A;  1EW2 A;  2ZKT A;  1AJC A;  5HRT A;  3M8Y A;  2QZU A;  1AJB A;  1N2K A;  1ED8 A;  3DYC A;  2X98 A;  3IGZ B;  1ZED A;  4LR7 A;  3B5Q A;  5LRM A;  3M8Z A;  1KH5 A;  3WAY A;  3WAV A;  1ELZ A;  1HQA A;  2XRG A;  1AJA A;  3M7V A;  4FDI A;  4FDJ A;  4KJD A;  3IDD A;  2W5T A;  4CXK A;  2GSU A;  3TX0 A;  2W5Q A;  4NWJ A;  2W5W A;  3NKR A;  5TJ3 A;  5GOV A;  4GTZ A;  4UPK A;  1KHJ A;  1ED9 A;  3OT9 A;  5C66 A;  1KH4 A;  1KHN A;  3BDH A;  4LRB A;  4UPL A;  5L0B A;  2W8D A;  4CXS A;  5DLT A;  2RH6 A;  1K7H A;  4GTX A;  4CYS A;  5GRR A;  1B8J A;  4QAX A;  1ZEF A;  4B56 A;  4CYR A;  5EGE A;  3T01 A;  5K4P A;  5IJQ A;  3SZZ A;  2G9Y A;  1URB A;  4LR8 A;  4MIV A;  3CMR A;  2GSO A;  3E2D A;  5DLW A;  5L0K A;  1ELY A;  1ELX A;  3NKP A;  1AJD A;  3A52 A;  3DPC A;  2XR9 A;  1Y7A A;  4ZGA A;  2IUC B;  1ALH A;  1E3C P;  1FSU A;  2D1G A;  3UN5 A;  5IJS A;  1O98 A;  3TWZ A;  4LQY A;  1EW8 A;  4KAY A;  4GTW A; 
#chains in the Genus database with same CATH topology
 4UOR A;  1Y6V A;  1EW9 A;  3MK0 A;  4KM4 A;  1ALI A;  1E1Z P;  3NKM A;  4LRF A;  2VQR A;  4UOP A;  3WAW A;  3BDF A;  1ALJ A;  2W8S A;  5AJ9 A;  4YR1 A;  4LRC A;  5LQQ A;  3M8W A;  5INH A;  4N7T A;  1KH7 A;  1P49 A;  3BDG B;  2IFY A;  1ANJ A;  4MY4 A;  5LIA A;  3UN3 A;  2GSN A;  3WBH A;  1EJJ A;  3TG0 A;  5KXA A;  1KH9 A;  2GA3 A;  3WAX A;  5L0E A;  4ZG6 A;  1HDH A;  1AUK A;  3T00 A;  3UN2 A;  2W5R A;  1O99 A;  4UPH A;  4ZG7 A;  2GLQ A;  4KJG A;  5DLV A;  5EGH A;  3NKQ A;  1SHQ A;  3MK1 A;  1ALK A;  4LR2 A;  1URA A;  2W5V A;  2IUC A;  2W5S A;  3SZY A;  1HJK A;  2ANH A;  1ZEB A;  4UOO A;  5LRN A;  2W5X A;  3NVL A;  4LRD A;  1E2S P;  1E33 P;  4LR9 A;  4LRA A;  1KHK A;  3ED4 A;  3NKO A;  3LXQ A;  4KAV A;  3IGY B;  4UPI A;  4CXU A;  4LRE A;  3T02 A;  4ZG9 A;  4TN0 A;  3Q3Q A;  1KHL A;  4NWX A;  1EQJ A;  1EI6 A;  1N2L A;  3NKN A;  3UO0 A;  3MK2 A;  1SHN A;  3KD8 A;  1ANI A;  3BDG A;  4GTY A;  4MHX A;  3UNY A;  1EW2 A;  2ZKT A;  1AJC A;  5HRT A;  3M8Y A;  2QZU A;  1AJB A;  1N2K A;  1ED8 A;  3DYC A;  2X98 A;  3IGZ B;  1ZED A;  4LR7 A;  3B5Q A;  5LRM A;  3M8Z A;  1KH5 A;  3WAY A;  3WAV A;  1ELZ A;  1HQA A;  2XRG A;  1AJA A;  3M7V A;  4FDI A;  4FDJ A;  4KJD A;  3IDD A;  2W5T A;  4CXK A;  2GSU A;  3TX0 A;  2W5Q A;  4NWJ A;  2W5W A;  3NKR A;  5TJ3 A;  5GOV A;  4GTZ A;  4UPK A;  1KHJ A;  1ED9 A;  3OT9 A;  5C66 A;  1KH4 A;  1KHN A;  3BDH A;  4LRB A;  4UPL A;  5L0B A;  2W8D A;  4CXS A;  5DLT A;  2RH6 A;  1K7H A;  4GTX A;  4CYS A;  5GRR A;  1B8J A;  4QAX A;  1ZEF A;  4B56 A;  4CYR A;  5EGE A;  3T01 A;  5K4P A;  5IJQ A;  3SZZ A;  2G9Y A;  1URB A;  4LR8 A;  4MIV A;  3CMR A;  2GSO A;  3E2D A;  5DLW A;  5L0K A;  1ELY A;  1ELX A;  3NKP A;  1AJD A;  3A52 A;  3DPC A;  2XR9 A;  1Y7A A;  4ZGA A;  2IUC B;  1ALH A;  1E3C P;  1FSU A;  2D1G A;  3UN5 A;  5IJS A;  1O98 A;  3TWZ A;  4LQY A;  1EW8 A;  4KAY A;  4GTW A; 
#chains in the Genus database with same CATH homology
 4UOR A;  1Y6V A;  1EW9 A;  3MK0 A;  4KM4 A;  1ALI A;  1E1Z P;  3NKM A;  4LRF A;  2VQR A;  4UOP A;  3WAW A;  3BDF A;  1ALJ A;  2W8S A;  5AJ9 A;  4YR1 A;  4LRC A;  5LQQ A;  3M8W A;  5INH A;  4N7T A;  1KH7 A;  1P49 A;  3BDG B;  2IFY A;  1ANJ A;  4MY4 A;  5LIA A;  3UN3 A;  2GSN A;  3WBH A;  1EJJ A;  3TG0 A;  5KXA A;  1KH9 A;  2GA3 A;  3WAX A;  5L0E A;  4ZG6 A;  1HDH A;  1AUK A;  3T00 A;  3UN2 A;  2W5R A;  1O99 A;  4UPH A;  4ZG7 A;  2GLQ A;  4KJG A;  5DLV A;  5EGH A;  3NKQ A;  1SHQ A;  3MK1 A;  1ALK A;  4LR2 A;  1URA A;  2W5V A;  2IUC A;  2W5S A;  3SZY A;  1HJK A;  2ANH A;  1ZEB A;  4UOO A;  5LRN A;  2W5X A;  3NVL A;  4LRD A;  1E2S P;  1E33 P;  4LR9 A;  4LRA A;  1KHK A;  3ED4 A;  3NKO A;  3LXQ A;  4KAV A;  3IGY B;  4UPI A;  4CXU A;  4LRE A;  3T02 A;  4ZG9 A;  4TN0 A;  3Q3Q A;  1KHL A;  4NWX A;  1EQJ A;  1EI6 A;  1N2L A;  3NKN A;  3UO0 A;  3MK2 A;  1SHN A;  3KD8 A;  1ANI A;  3BDG A;  4GTY A;  4MHX A;  3UNY A;  1EW2 A;  2ZKT A;  1AJC A;  5HRT A;  3M8Y A;  2QZU A;  1AJB A;  1N2K A;  1ED8 A;  3DYC A;  2X98 A;  3IGZ B;  1ZED A;  4LR7 A;  3B5Q A;  5LRM A;  3M8Z A;  1KH5 A;  3WAY A;  3WAV A;  1ELZ A;  1HQA A;  2XRG A;  1AJA A;  3M7V A;  4FDI A;  4FDJ A;  4KJD A;  3IDD A;  2W5T A;  4CXK A;  2GSU A;  3TX0 A;  2W5Q A;  4NWJ A;  2W5W A;  3NKR A;  5TJ3 A;  5GOV A;  4GTZ A;  4UPK A;  1KHJ A;  1ED9 A;  3OT9 A;  5C66 A;  1KH4 A;  1KHN A;  3BDH A;  4LRB A;  4UPL A;  5L0B A;  2W8D A;  4CXS A;  5DLT A;  2RH6 A;  1K7H A;  4GTX A;  4CYS A;  5GRR A;  1B8J A;  4QAX A;  1ZEF A;  4B56 A;  4CYR A;  5EGE A;  3T01 A;  5K4P A;  5IJQ A;  3SZZ A;  2G9Y A;  1URB A;  4LR8 A;  4MIV A;  3CMR A;  2GSO A;  3E2D A;  5DLW A;  5L0K A;  1ELY A;  1ELX A;  3NKP A;  1AJD A;  3A52 A;  3DPC A;  2XR9 A;  1Y7A A;  4ZGA A;  2IUC B;  1ALH A;  1E3C P;  1FSU A;  2D1G A;  3UN5 A;  5IJS A;  1O98 A;  3TWZ A;  4LQY A;  1EW8 A;  4KAY A;  4GTW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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