4KBJA

Structure of mtb rnap beta subunit b1 and b2 domains
Total Genus 119
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
119
sequence length
386
structure length
384
Chain Sequence
b'PRGSHMMLLDVQTDSFEWLIGSPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVETDDIDHNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFF'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords DNA-directed RNA polymerase subunit beta
publication title Structure of the Mtb CarD/RNAP beta-Lobes Complex Reveals the Molecular Basis of Interaction and Presents a Distinct DNA-Binding Domain for Mtb CarD.
pubmed doi rcsb
source organism Mycobacterium tuberculosis
molecule tags Transferase
total genus 119
structure length 384
sequence length 386
chains with identical sequence B
ec nomenclature ec 2.7.7.6: DNA-directed RNA polymerase.
pdb deposition date 2013-04-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04561 RNA_pol_Rpb2_2 RNA polymerase Rpb2, domain 2
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1110.10 Alpha Beta Alpha-Beta Complex Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 RNA polymerase Rpb2, domain 2 4kbjA02
3FKIB 1SFOB 3HKZB 4C3IB 3RZDB 1R9TB 3GTJB 4BBSB 3S2HB 1I6HB 2NVYB 3S1MB 4A3MB 1Y1WB 3HOVB 2WAQB 4A3KB 4G7HC 1YNNC 2CW0C 2BE5C 3PO2B 3S17B 5C3EB 2O5IC 4A3BB 5C44B 4A3EB 3HOWB 3S14B 4G7ZC 1TWFB 4A3DB 2E2HB 2A69C 5C4XB 4A3JB 3S1QB 3S2DB 1SMYC 2R92B 4LJZC 3PO3B 3CQZB 4A3FB 1ZYRC 2Y0SB 3H0GB 4A3IB 3GTMB 1I50B 4QIWB 2PMZB 5M3FB 1Y1VB 2NVXB 1I6VC 2A68C 3S15B 4BY7B 5M3MB 3M4OB 1WCMB 3I4NB 4A93B 2YU9B 3EQLC 4BBRB 3I4MB 2WB1B 5M5WB 3HOUB 3GTOB 2VUMB 1HQMC 1TWCB 2NVTB 1YNJC 3GTGB 5C4JB 4A3GB 3M3YB 1K83B 1I3QB 3GTPB 2E2JB 4KBMA 2A6HC 3RZOB 3GTLB 3DXJC 2JA8B 3GTKB 4C3HB 5M5YB 4C2MB 4GZYC 3LTIA 2JA5B 3GTQB 2E2IB 4C3JB 3HOZB 2B63B 2NVQB 4G7OC 4LK1C 3S1NB 2A6EC 1TWHB 2PPBC 4BY1B 1TWAB 1TWGB 5M5XB 1IW7C 4KBJA 3H3VC 2R93B 3HOYB 2JA6B 2JA7B 4Y7NB 4AYBB 3S16B 2R7ZB 3K7AB 3HOXB 2O5JC 3S1RB
chains in the Genus database with same CATH superfamily
3FKIB 1SFOB 3HKZB 4C3IB 3RZDB 1R9TB 3GTJB 4BBSB 3S2HB 1I6HB 2NVYB 3S1MB 4A3MB 1Y1WB 3HOVB 2WAQB 4A3KB 4G7HC 1YNNC 2CW0C 2BE5C 3PO2B 3S17B 5C3EB 2O5IC 4A3BB 5C44B 4A3EB 3HOWB 3S14B 4G7ZC 1TWFB 4A3DB 2E2HB 2A69C 5C4XB 4A3JB 3S1QB 3S2DB 1SMYC 2R92B 4LJZC 3PO3B 3CQZB 4A3FB 1ZYRC 2Y0SB 3H0GB 4A3IB 3GTMB 1I50B 4QIWB 2PMZB 5M3FB 1Y1VB 2NVXB 1I6VC 2A68C 3S15B 4BY7B 5M3MB 3M4OB 1WCMB 3I4NB 4A93B 2YU9B 3EQLC 4BBRB 3I4MB 2WB1B 5M5WB 3HOUB 3GTOB 2VUMB 1HQMC 1TWCB 2NVTB 1YNJC 3GTGB 5C4JB 4A3GB 3M3YB 1K83B 1I3QB 3GTPB 2E2JB 4KBMA 2A6HC 3RZOB 3GTLB 3DXJC 2JA8B 3GTKB 4C3HB 5M5YB 4C2MB 4GZYC 3LTIA 2JA5B 3GTQB 2E2IB 4C3JB 3HOZB 2B63B 2NVQB 4G7OC 4LK1C 3S1NB 2A6EC 1TWHB 2PPBC 4BY1B 1TWAB 1TWGB 5M5XB 1IW7C 4KBJA 3H3VC 2R93B 3HOYB 2JA6B 2JA7B 4Y7NB 4AYBB 3S16B 2R7ZB 3K7AB 3HOXB 2O5JC 3S1RB
chains in the Genus database with same CATH topology
3FKIB 1SFOB 3HKZB 4C3IB 3RZDB 1R9TB 3GTJB 4BBSB 3S2HB 1I6HB 2NVYB 3S1MB 4A3MB 1Y1WB 3HOVB 2WAQB 4A3KB 4G7HC 1YNNC 2CW0C 2BE5C 3PO2B 3S17B 5C3EB 2O5IC 4A3BB 5C44B 4A3EB 3HOWB 3S14B 4G7ZC 1TWFB 4A3DB 2E2HB 2A69C 5C4XB 4A3JB 3S1QB 3S2DB 1SMYC 2R92B 4LJZC 3PO3B 3CQZB 4A3FB 1ZYRC 2Y0SB 3H0GB 4A3IB 3GTMB 1I50B 4QIWB 2PMZB 5M3FB 1Y1VB 2NVXB 1I6VC 2A68C 3S15B 4BY7B 5M3MB 3M4OB 1WCMB 3I4NB 4A93B 2YU9B 3EQLC 4BBRB 3I4MB 2WB1B 5M5WB 3HOUB 3GTOB 2VUMB 1HQMC 1TWCB 2NVTB 1YNJC 3GTGB 5C4JB 4A3GB 3M3YB 1K83B 1I3QB 3GTPB 2E2JB 4KBMA 2A6HC 3RZOB 3GTLB 3DXJC 2JA8B 3GTKB 4C3HB 5M5YB 4C2MB 4GZYC 3LTIA 2JA5B 3GTQB 2E2IB 4C3JB 3HOZB 2B63B 2NVQB 4G7OC 4LK1C 3S1NB 2A6EC 1TWHB 2PPBC 4BY1B 1TWAB 1TWGB 5M5XB 1IW7C 4KBJA 3H3VC 2R93B 3HOYB 2JA6B 2JA7B 4Y7NB 4AYBB 3S16B 2R7ZB 3K7AB 3HOXB 2O5JC 3S1RB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FKI B;  1SFO B;  3HKZ B;  4C3I B;  3RZD B;  1R9T B;  3GTJ B;  4BBS B;  3S2H B;  1I6H B;  2NVY B;  3S1M B;  4A3M B;  1Y1W B;  3HOV B;  2WAQ B;  4A3K B;  4G7H C;  1YNN C;  2CW0 C;  2BE5 C;  3PO2 B;  3S17 B;  5C3E B;  2O5I C;  4A3B B;  5C44 B;  4A3E B;  3HOW B;  3S14 B;  4G7Z C;  1TWF B;  4A3D B;  2E2H B;  2A69 C;  5C4X B;  4A3J B;  3S1Q B;  3S2D B;  1SMY C;  2R92 B;  4LJZ C;  3PO3 B;  3CQZ B;  4A3F B;  1ZYR C;  2Y0S B;  3H0G B;  4A3I B;  3GTM B;  1I50 B;  4QIW B;  2PMZ B;  5M3F B;  1Y1V B;  2NVX B;  1I6V C;  2A68 C;  3S15 B;  4BY7 B;  5M3M B;  3M4O B;  1WCM B;  3I4N B;  4A93 B;  2YU9 B;  3EQL C;  4BBR B;  3I4M B;  2WB1 B;  5M5W B;  3HOU B;  3GTO B;  2VUM B;  1HQM C;  1TWC B;  2NVT B;  1YNJ C;  3GTG B;  5C4J B;  4A3G B;  3M3Y B;  1K83 B;  1I3Q B;  3GTP B;  2E2J B;  4KBM A;  2A6H C;  3RZO B;  3GTL B;  3DXJ C;  2JA8 B;  3GTK B;  4C3H B;  5M5Y B;  4C2M B;  4GZY C;  3LTI A;  2JA5 B;  3GTQ B;  2E2I B;  4C3J B;  3HOZ B;  2B63 B;  2NVQ B;  4G7O C;  4LK1 C;  3S1N B;  2A6E C;  1TWH B;  2PPB C;  4BY1 B;  1TWA B;  1TWG B;  5M5X B;  1IW7 C;  4KBJ A;  3H3V C;  2R93 B;  3HOY B;  2JA6 B;  2JA7 B;  4Y7N B;  4AYB B;  3S16 B;  2R7Z B;  3K7A B;  3HOX B;  2O5J C;  3S1R B; 
#chains in the Genus database with same CATH topology
 3FKI B;  1SFO B;  3HKZ B;  4C3I B;  3RZD B;  1R9T B;  3GTJ B;  4BBS B;  3S2H B;  1I6H B;  2NVY B;  3S1M B;  4A3M B;  1Y1W B;  3HOV B;  2WAQ B;  4A3K B;  4G7H C;  1YNN C;  2CW0 C;  2BE5 C;  3PO2 B;  3S17 B;  5C3E B;  2O5I C;  4A3B B;  5C44 B;  4A3E B;  3HOW B;  3S14 B;  4G7Z C;  1TWF B;  4A3D B;  2E2H B;  2A69 C;  5C4X B;  4A3J B;  3S1Q B;  3S2D B;  1SMY C;  2R92 B;  4LJZ C;  3PO3 B;  3CQZ B;  4A3F B;  1ZYR C;  2Y0S B;  3H0G B;  4A3I B;  3GTM B;  1I50 B;  4QIW B;  2PMZ B;  5M3F B;  1Y1V B;  2NVX B;  1I6V C;  2A68 C;  3S15 B;  4BY7 B;  5M3M B;  3M4O B;  1WCM B;  3I4N B;  4A93 B;  2YU9 B;  3EQL C;  4BBR B;  3I4M B;  2WB1 B;  5M5W B;  3HOU B;  3GTO B;  2VUM B;  1HQM C;  1TWC B;  2NVT B;  1YNJ C;  3GTG B;  5C4J B;  4A3G B;  3M3Y B;  1K83 B;  1I3Q B;  3GTP B;  2E2J B;  4KBM A;  2A6H C;  3RZO B;  3GTL B;  3DXJ C;  2JA8 B;  3GTK B;  4C3H B;  5M5Y B;  4C2M B;  4GZY C;  3LTI A;  2JA5 B;  3GTQ B;  2E2I B;  4C3J B;  3HOZ B;  2B63 B;  2NVQ B;  4G7O C;  4LK1 C;  3S1N B;  2A6E C;  1TWH B;  2PPB C;  4BY1 B;  1TWA B;  1TWG B;  5M5X B;  1IW7 C;  4KBJ A;  3H3V C;  2R93 B;  3HOY B;  2JA6 B;  2JA7 B;  4Y7N B;  4AYB B;  3S16 B;  2R7Z B;  3K7A B;  3HOX B;  2O5J C;  3S1R B; 
#chains in the Genus database with same CATH homology
 3FKI B;  1SFO B;  3HKZ B;  4C3I B;  3RZD B;  1R9T B;  3GTJ B;  4BBS B;  3S2H B;  1I6H B;  2NVY B;  3S1M B;  4A3M B;  1Y1W B;  3HOV B;  2WAQ B;  4A3K B;  4G7H C;  1YNN C;  2CW0 C;  2BE5 C;  3PO2 B;  3S17 B;  5C3E B;  2O5I C;  4A3B B;  5C44 B;  4A3E B;  3HOW B;  3S14 B;  4G7Z C;  1TWF B;  4A3D B;  2E2H B;  2A69 C;  5C4X B;  4A3J B;  3S1Q B;  3S2D B;  1SMY C;  2R92 B;  4LJZ C;  3PO3 B;  3CQZ B;  4A3F B;  1ZYR C;  2Y0S B;  3H0G B;  4A3I B;  3GTM B;  1I50 B;  4QIW B;  2PMZ B;  5M3F B;  1Y1V B;  2NVX B;  1I6V C;  2A68 C;  3S15 B;  4BY7 B;  5M3M B;  3M4O B;  1WCM B;  3I4N B;  4A93 B;  2YU9 B;  3EQL C;  4BBR B;  3I4M B;  2WB1 B;  5M5W B;  3HOU B;  3GTO B;  2VUM B;  1HQM C;  1TWC B;  2NVT B;  1YNJ C;  3GTG B;  5C4J B;  4A3G B;  3M3Y B;  1K83 B;  1I3Q B;  3GTP B;  2E2J B;  4KBM A;  2A6H C;  3RZO B;  3GTL B;  3DXJ C;  2JA8 B;  3GTK B;  4C3H B;  5M5Y B;  4C2M B;  4GZY C;  3LTI A;  2JA5 B;  3GTQ B;  2E2I B;  4C3J B;  3HOZ B;  2B63 B;  2NVQ B;  4G7O C;  4LK1 C;  3S1N B;  2A6E C;  1TWH B;  2PPB C;  4BY1 B;  1TWA B;  1TWG B;  5M5X B;  1IW7 C;  4KBJ A;  3H3V C;  2R93 B;  3HOY B;  2JA6 B;  2JA7 B;  4Y7N B;  4AYB B;  3S16 B;  2R7Z B;  3K7A B;  3HOX B;  2O5J C;  3S1R B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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