4KBMA

Structure of the mtb card/rnap beta subunit b1-b2 domains complex
Total Genus 122
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
122
sequence length
386
structure length
386
Chain Sequence
RGSHMMLLDVQTDSFEWLIGSPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase/transcription
source organism Mycobacterium tuberculosis
publication title Structure of the Mtb CarD/RNAP beta-Lobes Complex Reveals the Molecular Basis of Interaction and Presents a Distinct DNA-Binding Domain for Mtb CarD.
pubmed doi rcsb
molecule keywords DNA-directed RNA polymerase subunit beta
total genus 122
structure length 386
sequence length 386
ec nomenclature ec 2.7.7.6: DNA-directed RNA polymerase.
pdb deposition date 2013-04-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04561 RNA_pol_Rpb2_2 RNA polymerase Rpb2, domain 2
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1110.10 Alpha Beta Alpha-Beta Complex Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 RNA polymerase Rpb2, domain 2 4kbmA02
1Y1VB 3S1MB 1YNJC 2A68C 3I4MB 3S2DB 2E2JB 5M5YB 3H3VC 2JA6B 4A3MB 3I4NB 3GTQB 4G7HC 2YU9B 2NVQB 1Y1WB 3GTLB 4BBRB 4A3JB 2VUMB 3CQZB 4QIWB 5M3FB 2JA8B 2A6HC 1HQMC 4A3GB 3GTJB 1WCMB 4A3FB 4C3IB 3DXJC 4Y7NB 2O5JC 5M5WB 2R7ZB 4A3DB 3EQLC 3S1QB 3PO2B 3GTMB 4A3BB 5C4JB 2A6EC 4A3KB 1YNNC 4A93B 3RZOB 4C3JB 3HOWB 3HKZB 3S16B 2JA7B 4BY7B 1I6VC 4BY1B 2CW0C 2A69C 5C4XB 2E2IB 2B63B 1I50B 2PMZB 3GTGB 2Y0SB 1SMYC 1TWFB 3HOYB 2PPBC 3M4OB 3S1NB 3HOZB 2WB1B 4LK1C 1IW7C 4BBSB 3S17B 4AYBB 3GTOB 1K83B 3FKIB 2NVTB 1TWHB 5M5XB 4A3IB 1TWGB 5C3EB 4GZYC 1ZYRC 5C44B 2E2HB 4G7OC 1TWCB 4A3EB 3S14B 2NVYB 3S2HB 3GTPB 2R92B 3HOUB 3H0GB 4KBMA 4G7ZC 1I6HB 2JA5B 1I3QB 2WAQB 5M3MB 2R93B 1TWAB 4C3HB 3GTKB 3S15B 3K7AB 2O5IC 4C2MB 3RZDB 2BE5C 3LTIA 3PO3B 3M3YB 3HOXB 4LJZC 3HOVB 3S1RB 2NVXB 4KBJA 1SFOB 1R9TB
chains in the Genus database with same CATH superfamily
1Y1VB 3S1MB 1YNJC 2A68C 3I4MB 3S2DB 2E2JB 5M5YB 3H3VC 2JA6B 4A3MB 3I4NB 3GTQB 4G7HC 2YU9B 2NVQB 1Y1WB 3GTLB 4BBRB 4A3JB 2VUMB 3CQZB 4QIWB 5M3FB 2JA8B 2A6HC 1HQMC 4A3GB 3GTJB 1WCMB 4A3FB 4C3IB 3DXJC 4Y7NB 2O5JC 5M5WB 2R7ZB 4A3DB 3EQLC 3S1QB 3PO2B 3GTMB 4A3BB 5C4JB 2A6EC 4A3KB 1YNNC 4A93B 3RZOB 4C3JB 3HOWB 3HKZB 3S16B 2JA7B 4BY7B 1I6VC 4BY1B 2CW0C 2A69C 5C4XB 2E2IB 2B63B 1I50B 2PMZB 3GTGB 2Y0SB 1SMYC 1TWFB 3HOYB 2PPBC 3M4OB 3S1NB 3HOZB 2WB1B 4LK1C 1IW7C 4BBSB 3S17B 4AYBB 3GTOB 1K83B 3FKIB 2NVTB 1TWHB 5M5XB 4A3IB 1TWGB 5C3EB 4GZYC 1ZYRC 5C44B 2E2HB 4G7OC 1TWCB 4A3EB 3S14B 2NVYB 3S2HB 3GTPB 2R92B 3HOUB 3H0GB 4KBMA 4G7ZC 1I6HB 2JA5B 1I3QB 2WAQB 5M3MB 2R93B 1TWAB 4C3HB 3GTKB 3S15B 3K7AB 2O5IC 4C2MB 3RZDB 2BE5C 3LTIA 3PO3B 3M3YB 3HOXB 4LJZC 3HOVB 3S1RB 2NVXB 4KBJA 1SFOB 1R9TB
chains in the Genus database with same CATH topology
1Y1VB 3S1MB 1YNJC 2A68C 3I4MB 3S2DB 2E2JB 5M5YB 3H3VC 2JA6B 4A3MB 3I4NB 3GTQB 4G7HC 2YU9B 2NVQB 1Y1WB 3GTLB 4BBRB 4A3JB 2VUMB 3CQZB 4QIWB 5M3FB 2JA8B 2A6HC 1HQMC 4A3GB 3GTJB 1WCMB 4A3FB 4C3IB 3DXJC 4Y7NB 2O5JC 5M5WB 2R7ZB 4A3DB 3EQLC 3S1QB 3PO2B 3GTMB 4A3BB 5C4JB 2A6EC 4A3KB 1YNNC 4A93B 3RZOB 4C3JB 3HOWB 3HKZB 3S16B 2JA7B 4BY7B 1I6VC 4BY1B 2CW0C 2A69C 5C4XB 2E2IB 2B63B 1I50B 2PMZB 3GTGB 2Y0SB 1SMYC 1TWFB 3HOYB 2PPBC 3M4OB 3S1NB 3HOZB 2WB1B 4LK1C 1IW7C 4BBSB 3S17B 4AYBB 3GTOB 1K83B 3FKIB 2NVTB 1TWHB 5M5XB 4A3IB 1TWGB 5C3EB 4GZYC 1ZYRC 5C44B 2E2HB 4G7OC 1TWCB 4A3EB 3S14B 2NVYB 3S2HB 3GTPB 2R92B 3HOUB 3H0GB 4KBMA 4G7ZC 1I6HB 2JA5B 1I3QB 2WAQB 5M3MB 2R93B 1TWAB 4C3HB 3GTKB 3S15B 3K7AB 2O5IC 4C2MB 3RZDB 2BE5C 3LTIA 3PO3B 3M3YB 3HOXB 4LJZC 3HOVB 3S1RB 2NVXB 4KBJA 1SFOB 1R9TB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Y1V B;  3S1M B;  1YNJ C;  2A68 C;  3I4M B;  3S2D B;  2E2J B;  5M5Y B;  3H3V C;  2JA6 B;  4A3M B;  3I4N B;  3GTQ B;  4G7H C;  2YU9 B;  2NVQ B;  1Y1W B;  3GTL B;  4BBR B;  4A3J B;  2VUM B;  3CQZ B;  4QIW B;  5M3F B;  2JA8 B;  2A6H C;  1HQM C;  4A3G B;  3GTJ B;  1WCM B;  4A3F B;  4C3I B;  3DXJ C;  4Y7N B;  2O5J C;  5M5W B;  2R7Z B;  4A3D B;  3EQL C;  3S1Q B;  3PO2 B;  3GTM B;  4A3B B;  5C4J B;  2A6E C;  4A3K B;  1YNN C;  4A93 B;  3RZO B;  4C3J B;  3HOW B;  3HKZ B;  3S16 B;  2JA7 B;  4BY7 B;  1I6V C;  4BY1 B;  2CW0 C;  2A69 C;  5C4X B;  2E2I B;  2B63 B;  1I50 B;  2PMZ B;  3GTG B;  2Y0S B;  1SMY C;  1TWF B;  3HOY B;  2PPB C;  3M4O B;  3S1N B;  3HOZ B;  2WB1 B;  4LK1 C;  1IW7 C;  4BBS B;  3S17 B;  4AYB B;  3GTO B;  1K83 B;  3FKI B;  2NVT B;  1TWH B;  5M5X B;  4A3I B;  1TWG B;  5C3E B;  4GZY C;  1ZYR C;  5C44 B;  2E2H B;  4G7O C;  1TWC B;  4A3E B;  3S14 B;  2NVY B;  3S2H B;  3GTP B;  2R92 B;  3HOU B;  3H0G B;  4KBM A;  4G7Z C;  1I6H B;  2JA5 B;  1I3Q B;  2WAQ B;  5M3M B;  2R93 B;  1TWA B;  4C3H B;  3GTK B;  3S15 B;  3K7A B;  2O5I C;  4C2M B;  3RZD B;  2BE5 C;  3LTI A;  3PO3 B;  3M3Y B;  3HOX B;  4LJZ C;  3HOV B;  3S1R B;  2NVX B;  4KBJ A;  1SFO B;  1R9T B; 
#chains in the Genus database with same CATH topology
 1Y1V B;  3S1M B;  1YNJ C;  2A68 C;  3I4M B;  3S2D B;  2E2J B;  5M5Y B;  3H3V C;  2JA6 B;  4A3M B;  3I4N B;  3GTQ B;  4G7H C;  2YU9 B;  2NVQ B;  1Y1W B;  3GTL B;  4BBR B;  4A3J B;  2VUM B;  3CQZ B;  4QIW B;  5M3F B;  2JA8 B;  2A6H C;  1HQM C;  4A3G B;  3GTJ B;  1WCM B;  4A3F B;  4C3I B;  3DXJ C;  4Y7N B;  2O5J C;  5M5W B;  2R7Z B;  4A3D B;  3EQL C;  3S1Q B;  3PO2 B;  3GTM B;  4A3B B;  5C4J B;  2A6E C;  4A3K B;  1YNN C;  4A93 B;  3RZO B;  4C3J B;  3HOW B;  3HKZ B;  3S16 B;  2JA7 B;  4BY7 B;  1I6V C;  4BY1 B;  2CW0 C;  2A69 C;  5C4X B;  2E2I B;  2B63 B;  1I50 B;  2PMZ B;  3GTG B;  2Y0S B;  1SMY C;  1TWF B;  3HOY B;  2PPB C;  3M4O B;  3S1N B;  3HOZ B;  2WB1 B;  4LK1 C;  1IW7 C;  4BBS B;  3S17 B;  4AYB B;  3GTO B;  1K83 B;  3FKI B;  2NVT B;  1TWH B;  5M5X B;  4A3I B;  1TWG B;  5C3E B;  4GZY C;  1ZYR C;  5C44 B;  2E2H B;  4G7O C;  1TWC B;  4A3E B;  3S14 B;  2NVY B;  3S2H B;  3GTP B;  2R92 B;  3HOU B;  3H0G B;  4KBM A;  4G7Z C;  1I6H B;  2JA5 B;  1I3Q B;  2WAQ B;  5M3M B;  2R93 B;  1TWA B;  4C3H B;  3GTK B;  3S15 B;  3K7A B;  2O5I C;  4C2M B;  3RZD B;  2BE5 C;  3LTI A;  3PO3 B;  3M3Y B;  3HOX B;  4LJZ C;  3HOV B;  3S1R B;  2NVX B;  4KBJ A;  1SFO B;  1R9T B; 
#chains in the Genus database with same CATH homology
 1Y1V B;  3S1M B;  1YNJ C;  2A68 C;  3I4M B;  3S2D B;  2E2J B;  5M5Y B;  3H3V C;  2JA6 B;  4A3M B;  3I4N B;  3GTQ B;  4G7H C;  2YU9 B;  2NVQ B;  1Y1W B;  3GTL B;  4BBR B;  4A3J B;  2VUM B;  3CQZ B;  4QIW B;  5M3F B;  2JA8 B;  2A6H C;  1HQM C;  4A3G B;  3GTJ B;  1WCM B;  4A3F B;  4C3I B;  3DXJ C;  4Y7N B;  2O5J C;  5M5W B;  2R7Z B;  4A3D B;  3EQL C;  3S1Q B;  3PO2 B;  3GTM B;  4A3B B;  5C4J B;  2A6E C;  4A3K B;  1YNN C;  4A93 B;  3RZO B;  4C3J B;  3HOW B;  3HKZ B;  3S16 B;  2JA7 B;  4BY7 B;  1I6V C;  4BY1 B;  2CW0 C;  2A69 C;  5C4X B;  2E2I B;  2B63 B;  1I50 B;  2PMZ B;  3GTG B;  2Y0S B;  1SMY C;  1TWF B;  3HOY B;  2PPB C;  3M4O B;  3S1N B;  3HOZ B;  2WB1 B;  4LK1 C;  1IW7 C;  4BBS B;  3S17 B;  4AYB B;  3GTO B;  1K83 B;  3FKI B;  2NVT B;  1TWH B;  5M5X B;  4A3I B;  1TWG B;  5C3E B;  4GZY C;  1ZYR C;  5C44 B;  2E2H B;  4G7O C;  1TWC B;  4A3E B;  3S14 B;  2NVY B;  3S2H B;  3GTP B;  2R92 B;  3HOU B;  3H0G B;  4KBM A;  4G7Z C;  1I6H B;  2JA5 B;  1I3Q B;  2WAQ B;  5M3M B;  2R93 B;  1TWA B;  4C3H B;  3GTK B;  3S15 B;  3K7A B;  2O5I C;  4C2M B;  3RZD B;  2BE5 C;  3LTI A;  3PO3 B;  3M3Y B;  3HOX B;  4LJZ C;  3HOV B;  3S1R B;  2NVX B;  4KBJ A;  1SFO B;  1R9T B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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