4KBMA

Structure of the mtb card/rnap beta subunit b1-b2 domains complex
Total Genus 122
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
122
sequence length
386
structure length
386
Chain Sequence
b'RGSHMMLLDVQTDSFEWLIGSPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFG'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords DNA-directed RNA polymerase subunit beta
publication title Structure of the Mtb CarD/RNAP beta-Lobes Complex Reveals the Molecular Basis of Interaction and Presents a Distinct DNA-Binding Domain for Mtb CarD.
pubmed doi rcsb
source organism Mycobacterium tuberculosis
molecule tags Transferase/transcription
total genus 122
structure length 386
sequence length 386
ec nomenclature ec 2.7.7.6: DNA-directed RNA polymerase.
pdb deposition date 2013-04-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04561 RNA_pol_Rpb2_2 RNA polymerase Rpb2, domain 2
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1110.10 Alpha Beta Alpha-Beta Complex Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 RNA polymerase Rpb2, domain 2 4kbmA02
2PMZB 3HOZB 2A69C 2PPBC 3HOVB 1YNJC 2WAQB 3S14B 1ZYRC 3S16B 4BY7B 3S2DB 2Y0SB 2JA7B 2O5IC 1IW7C 1SMYC 4A3JB 2E2HB 3GTOB 4LJZC 2JA5B 3S15B 2O5JC 3HOXB 2R92B 4GZYC 2CW0C 5C4XB 1WCMB 3GTJB 2B63B 3I4MB 5M3MB 4G7OC 3I4NB 3S17B 4G7HC 5C44B 4A93B 2VUMB 4A3IB 4C3IB 4A3FB 5M3FB 2A6HC 1TWCB 1TWFB 4LK1C 1Y1VB 2NVYB 2A6EC 1SFOB 1I3QB 3DXJC 3GTPB 3GTLB 2WB1B 3S2HB 2JA8B 4QIWB 3S1QB 3CQZB 4Y7NB 2BE5C 2NVTB 4BBRB 2R93B 3RZOB 1TWHB 4A3DB 2R7ZB 2NVQB 4C2MB 4A3MB 1Y1WB 4BBSB 1I6VC 4KBMA 2E2JB 1TWGB 4AYBB 1YNNC 1R9TB 4A3GB 3EQLC 3GTKB 3LTIA 4G7ZC 3PO2B 2NVXB 3FKIB 5M5WB 2JA6B 3M3YB 4C3HB 3HOYB 3S1RB 1I6HB 3HKZB 3HOWB 4C3JB 3PO3B 5M5XB 5M5YB 3H0GB 1HQMC 3H3VC 3GTQB 3M4OB 3GTMB 3K7AB 4A3BB 3GTGB 4KBJA 3RZDB 3HOUB 4A3KB 5C3EB 4BY1B 3S1MB 1TWAB 3S1NB 2YU9B 2E2IB 5C4JB 2A68C 1K83B 4A3EB 1I50B
chains in the Genus database with same CATH superfamily
2PMZB 3HOZB 2A69C 2PPBC 3HOVB 1YNJC 2WAQB 3S14B 1ZYRC 3S16B 4BY7B 3S2DB 2Y0SB 2JA7B 2O5IC 1IW7C 1SMYC 4A3JB 2E2HB 3GTOB 4LJZC 2JA5B 3S15B 2O5JC 3HOXB 2R92B 4GZYC 2CW0C 5C4XB 1WCMB 3GTJB 2B63B 3I4MB 5M3MB 4G7OC 3I4NB 3S17B 4G7HC 5C44B 4A93B 2VUMB 4A3IB 4C3IB 4A3FB 5M3FB 2A6HC 1TWCB 1TWFB 4LK1C 1Y1VB 2NVYB 2A6EC 1SFOB 1I3QB 3DXJC 3GTPB 3GTLB 2WB1B 3S2HB 2JA8B 4QIWB 3S1QB 3CQZB 4Y7NB 2BE5C 2NVTB 4BBRB 2R93B 3RZOB 1TWHB 4A3DB 2R7ZB 2NVQB 4C2MB 4A3MB 1Y1WB 4BBSB 1I6VC 4KBMA 2E2JB 1TWGB 4AYBB 1YNNC 1R9TB 4A3GB 3EQLC 3GTKB 3LTIA 4G7ZC 3PO2B 2NVXB 3FKIB 5M5WB 2JA6B 3M3YB 4C3HB 3HOYB 3S1RB 1I6HB 3HKZB 3HOWB 4C3JB 3PO3B 5M5XB 5M5YB 3H0GB 1HQMC 3H3VC 3GTQB 3M4OB 3GTMB 3K7AB 4A3BB 3GTGB 4KBJA 3RZDB 3HOUB 4A3KB 5C3EB 4BY1B 3S1MB 1TWAB 3S1NB 2YU9B 2E2IB 5C4JB 2A68C 1K83B 4A3EB 1I50B
chains in the Genus database with same CATH topology
2PMZB 3HOZB 2A69C 2PPBC 3HOVB 1YNJC 2WAQB 3S14B 1ZYRC 3S16B 4BY7B 3S2DB 2Y0SB 2JA7B 2O5IC 1IW7C 1SMYC 4A3JB 2E2HB 3GTOB 4LJZC 2JA5B 3S15B 2O5JC 3HOXB 2R92B 4GZYC 2CW0C 5C4XB 1WCMB 3GTJB 2B63B 3I4MB 5M3MB 4G7OC 3I4NB 3S17B 4G7HC 5C44B 4A93B 2VUMB 4A3IB 4C3IB 4A3FB 5M3FB 2A6HC 1TWCB 1TWFB 4LK1C 1Y1VB 2NVYB 2A6EC 1SFOB 1I3QB 3DXJC 3GTPB 3GTLB 2WB1B 3S2HB 2JA8B 4QIWB 3S1QB 3CQZB 4Y7NB 2BE5C 2NVTB 4BBRB 2R93B 3RZOB 1TWHB 4A3DB 2R7ZB 2NVQB 4C2MB 4A3MB 1Y1WB 4BBSB 1I6VC 4KBMA 2E2JB 1TWGB 4AYBB 1YNNC 1R9TB 4A3GB 3EQLC 3GTKB 3LTIA 4G7ZC 3PO2B 2NVXB 3FKIB 5M5WB 2JA6B 3M3YB 4C3HB 3HOYB 3S1RB 1I6HB 3HKZB 3HOWB 4C3JB 3PO3B 5M5XB 5M5YB 3H0GB 1HQMC 3H3VC 3GTQB 3M4OB 3GTMB 3K7AB 4A3BB 3GTGB 4KBJA 3RZDB 3HOUB 4A3KB 5C3EB 4BY1B 3S1MB 1TWAB 3S1NB 2YU9B 2E2IB 5C4JB 2A68C 1K83B 4A3EB 1I50B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PMZ B;  3HOZ B;  2A69 C;  2PPB C;  3HOV B;  1YNJ C;  2WAQ B;  3S14 B;  1ZYR C;  3S16 B;  4BY7 B;  3S2D B;  2Y0S B;  2JA7 B;  2O5I C;  1IW7 C;  1SMY C;  4A3J B;  2E2H B;  3GTO B;  4LJZ C;  2JA5 B;  3S15 B;  2O5J C;  3HOX B;  2R92 B;  4GZY C;  2CW0 C;  5C4X B;  1WCM B;  3GTJ B;  2B63 B;  3I4M B;  5M3M B;  4G7O C;  3I4N B;  3S17 B;  4G7H C;  5C44 B;  4A93 B;  2VUM B;  4A3I B;  4C3I B;  4A3F B;  5M3F B;  2A6H C;  1TWC B;  1TWF B;  4LK1 C;  1Y1V B;  2NVY B;  2A6E C;  1SFO B;  1I3Q B;  3DXJ C;  3GTP B;  3GTL B;  2WB1 B;  3S2H B;  2JA8 B;  4QIW B;  3S1Q B;  3CQZ B;  4Y7N B;  2BE5 C;  2NVT B;  4BBR B;  2R93 B;  3RZO B;  1TWH B;  4A3D B;  2R7Z B;  2NVQ B;  4C2M B;  4A3M B;  1Y1W B;  4BBS B;  1I6V C;  4KBM A;  2E2J B;  1TWG B;  4AYB B;  1YNN C;  1R9T B;  4A3G B;  3EQL C;  3GTK B;  3LTI A;  4G7Z C;  3PO2 B;  2NVX B;  3FKI B;  5M5W B;  2JA6 B;  3M3Y B;  4C3H B;  3HOY B;  3S1R B;  1I6H B;  3HKZ B;  3HOW B;  4C3J B;  3PO3 B;  5M5X B;  5M5Y B;  3H0G B;  1HQM C;  3H3V C;  3GTQ B;  3M4O B;  3GTM B;  3K7A B;  4A3B B;  3GTG B;  4KBJ A;  3RZD B;  3HOU B;  4A3K B;  5C3E B;  4BY1 B;  3S1M B;  1TWA B;  3S1N B;  2YU9 B;  2E2I B;  5C4J B;  2A68 C;  1K83 B;  4A3E B;  1I50 B; 
#chains in the Genus database with same CATH topology
 2PMZ B;  3HOZ B;  2A69 C;  2PPB C;  3HOV B;  1YNJ C;  2WAQ B;  3S14 B;  1ZYR C;  3S16 B;  4BY7 B;  3S2D B;  2Y0S B;  2JA7 B;  2O5I C;  1IW7 C;  1SMY C;  4A3J B;  2E2H B;  3GTO B;  4LJZ C;  2JA5 B;  3S15 B;  2O5J C;  3HOX B;  2R92 B;  4GZY C;  2CW0 C;  5C4X B;  1WCM B;  3GTJ B;  2B63 B;  3I4M B;  5M3M B;  4G7O C;  3I4N B;  3S17 B;  4G7H C;  5C44 B;  4A93 B;  2VUM B;  4A3I B;  4C3I B;  4A3F B;  5M3F B;  2A6H C;  1TWC B;  1TWF B;  4LK1 C;  1Y1V B;  2NVY B;  2A6E C;  1SFO B;  1I3Q B;  3DXJ C;  3GTP B;  3GTL B;  2WB1 B;  3S2H B;  2JA8 B;  4QIW B;  3S1Q B;  3CQZ B;  4Y7N B;  2BE5 C;  2NVT B;  4BBR B;  2R93 B;  3RZO B;  1TWH B;  4A3D B;  2R7Z B;  2NVQ B;  4C2M B;  4A3M B;  1Y1W B;  4BBS B;  1I6V C;  4KBM A;  2E2J B;  1TWG B;  4AYB B;  1YNN C;  1R9T B;  4A3G B;  3EQL C;  3GTK B;  3LTI A;  4G7Z C;  3PO2 B;  2NVX B;  3FKI B;  5M5W B;  2JA6 B;  3M3Y B;  4C3H B;  3HOY B;  3S1R B;  1I6H B;  3HKZ B;  3HOW B;  4C3J B;  3PO3 B;  5M5X B;  5M5Y B;  3H0G B;  1HQM C;  3H3V C;  3GTQ B;  3M4O B;  3GTM B;  3K7A B;  4A3B B;  3GTG B;  4KBJ A;  3RZD B;  3HOU B;  4A3K B;  5C3E B;  4BY1 B;  3S1M B;  1TWA B;  3S1N B;  2YU9 B;  2E2I B;  5C4J B;  2A68 C;  1K83 B;  4A3E B;  1I50 B; 
#chains in the Genus database with same CATH homology
 2PMZ B;  3HOZ B;  2A69 C;  2PPB C;  3HOV B;  1YNJ C;  2WAQ B;  3S14 B;  1ZYR C;  3S16 B;  4BY7 B;  3S2D B;  2Y0S B;  2JA7 B;  2O5I C;  1IW7 C;  1SMY C;  4A3J B;  2E2H B;  3GTO B;  4LJZ C;  2JA5 B;  3S15 B;  2O5J C;  3HOX B;  2R92 B;  4GZY C;  2CW0 C;  5C4X B;  1WCM B;  3GTJ B;  2B63 B;  3I4M B;  5M3M B;  4G7O C;  3I4N B;  3S17 B;  4G7H C;  5C44 B;  4A93 B;  2VUM B;  4A3I B;  4C3I B;  4A3F B;  5M3F B;  2A6H C;  1TWC B;  1TWF B;  4LK1 C;  1Y1V B;  2NVY B;  2A6E C;  1SFO B;  1I3Q B;  3DXJ C;  3GTP B;  3GTL B;  2WB1 B;  3S2H B;  2JA8 B;  4QIW B;  3S1Q B;  3CQZ B;  4Y7N B;  2BE5 C;  2NVT B;  4BBR B;  2R93 B;  3RZO B;  1TWH B;  4A3D B;  2R7Z B;  2NVQ B;  4C2M B;  4A3M B;  1Y1W B;  4BBS B;  1I6V C;  4KBM A;  2E2J B;  1TWG B;  4AYB B;  1YNN C;  1R9T B;  4A3G B;  3EQL C;  3GTK B;  3LTI A;  4G7Z C;  3PO2 B;  2NVX B;  3FKI B;  5M5W B;  2JA6 B;  3M3Y B;  4C3H B;  3HOY B;  3S1R B;  1I6H B;  3HKZ B;  3HOW B;  4C3J B;  3PO3 B;  5M5X B;  5M5Y B;  3H0G B;  1HQM C;  3H3V C;  3GTQ B;  3M4O B;  3GTM B;  3K7A B;  4A3B B;  3GTG B;  4KBJ A;  3RZD B;  3HOU B;  4A3K B;  5C3E B;  4BY1 B;  3S1M B;  1TWA B;  3S1N B;  2YU9 B;  2E2I B;  5C4J B;  2A68 C;  1K83 B;  4A3E B;  1I50 B; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...