4KCFA

X-ray structure of a kijd3 in complex with fmn and dtdp-3-amino-2,3,6-trideoxy-4-keto-3-methyl-d-glucose
Total Genus 155
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
155
sequence length
407
structure length
407
Chain Sequence
DSTTGLYAPVTPAGRVLLDRLAAHLPRIRSTAAEHDRDGTFPTDTFDALRKDGLMGATVPAELGGLGVDRLYDVAVALLAVARADASTALALHMQLSRGLTLGYEWRHGDERARTLAERILRGMVAGDAVVCSGIKDHHTAVTTLRPDGAGGWLLSGRKTLVSMAPVGTHFVINARTDGTDGPPRLASPVVTRDTPGFTVLDNWDGLGMRASGTVDIVFDDCPIPADHVLMRDPVGARNDAVLAGQTVSSVSVLGVYVGVAQAAYDTAVAALERRPEPPQAAALTLVAEIDSRLYALRATAGSALTAADALSADLSGDMDERGRQMMRHFQCAKLAVNRLAPEIVSDCLSLVGGASYTAGHPLARLLRDVQAGRFMQPYAYVDAVDFLSAQALGIERDNNYMSTWAK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords FAD-dependent oxidoreductase
publication title Active site architecture of a sugar N-oxygenase.
pubmed doi rcsb
source organism Actinomadura kijaniata
molecule tags Oxidoreductase
total genus 155
structure length 407
sequence length 407
ec nomenclature
pdb deposition date 2013-04-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 4kcfA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 4kcfA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 4kcfA02
3BNGA 2OR0A 4N5FA 2DVLA 2R0MA 4JEKA 1QDBA 3BNJA 3TORA 2YYIA 2A1TA 5K3IA 3BNHA 3OIBA 2PG0A 2JBRA 4ZYJA 2YYKA 4XVXA 4L38A 3EONA 3MKHA 2OT4A 2IX5A 3NF4A 2ZO5A 4IV6A 4L1FA 4M9AA 3SF6A 1U8VA 1R2JA 1JQIA 3BNFA 3LGQA 4NXLA 2YYGA 1EGEA 3GQTA 3EOMA 1FS9A 2DDHA 2JIFA 3AFFA 4KTOA 3HWCA 4O5MA 1W07A 4OO2A 3OWMA 3FCJA 2JBSA 2WBIA 1RX0A 4L3YA 4P13A 4IRNA 3FO3A 4Q0TA 1BUCA 2E80A 4Q4UA 2EBAA 2E81A 4RM7A 2UXWA 3R7KA 1IVHA 3B96A 3SWOA 3SXQA 1IS2A 2JBTA 2RFQA 3MDDA 3UU9A 2FONA 3D9DA 3MMOA 3D6BA 2YYMA 1SIRA 3F29A 4Q1OA 1OAHA 4Q5CA 3PFDA 3D1IA 2ZAFA 3X0YA 3S7WA 2D29A 1EGCA 3P4TA 4X28A 3TTBA 3MPIA 1UKWA 3II9A 1T9GA 4HR3A 4Q5BA 2C12A 3SCEA 2YYLA 3RKHA 2VIGA 4G5EA 2Z1QA 4Q17A 3MXLA 3LG1A 2IX6A 4U83A 4L3ZA 3M9VA 3GM6A 2J7AA 4ZXVA 2YYJA 4L3XA 5K3HA 4KCFA 3UBRA 3MPJA 3D9EA 3D9FA 1SIQA 2VR0A 2R0NA 3L1TA 5K3GA 2C0UA 4WJYA 1FS7A 2RF7A 3D9GA 4W9UA 1GU6A 3MDEA 3GNCA 1EGDA 1UDYA 2REHA 3OWAA 2CX9A 2RDZA 3AFEA 3X0XA 1WS9A 4DOYA 1FS8A 5K3JA 4X28C
chains in the Genus database with same CATH superfamily
3BNGA 3Q23A 2Q8HA 5J6AA 3VKGA 2OR0A 3DJLA 4N5FA 5GJWE 2DVLA 2R0MA 4JEKA 1QDBA 2AZEA 2GBBA 4H85A 2Q8IA 2XQRB 3BNJA 3TORA 4AKHA 4FF1A 2YYIA 2A1TA 5K3IA 3BNHA 3OIBA 2PG0A 2JBRA 3TZ5A 2CJ5A 5B6BA 2Q8GA 4ZYJA 2YYKA 4J1VA 4XVXA 4L38A 2OEVA 3EONA 3MKHA 2E0AA 2EBFX 2OT4A 2IX5A 3NF4A 2CJ6A 2ZO5A 4IV6A 1RJ4A 4L1FA 4M9AA 2R03A 5BRMA 1GKZA 3SF6A 3Q24A 4MP2A 1U8VA 4H7QA 1R2JA 1JQIA 3BNFA 3LGQA 4JIZA 4NXLA 2YYGA 1EGEA 3GQTA 4V25A 5B5VA 3EOMA 1FS9A 1XFZA 1K90A 2DDHA 4V26A 2JIFA 3AFFA 4KTOA 1RP3A 3HWCA 4DZYA 3CE2A 5J71A 4O5MA 4AKGA 2BTZA 2PO4A 1W07A 4MPCA 2OEXA 1Y8NA 4HKSA 2R05A 3OWMA 4OO2A 4E01A 3FCJA 3VKHA 3U33A 2JBSA 4FZ4A 2WBIA 2XS8A 1RX0A 2CJ8A 4L3YA 3N0RA 4MP7A 4P13A 2BU7A 4IRNA 2HJNA 3FO3A 4HKRA 2PNRA 2EBHX 4MPNA 4E02A 4Q0TA 1BUCA 2E80A 5M4PA 4Q4UA 2EBAA 2E81A 4RM7A 2UXWA 3R7KA 1IVHA 3CRKA 3B96A 3SWOA 3SXQA 1R3BA 1Y0VA 1IS2A 2JBTA 2R02A 2VF1A 2Q8FA 1K8TA 3TZ4A 2RFQA 1GJVA 3MDDA 1X90A 1XFUA 2BU6A 2AO2A 1GKXA 3UU9A 4E00A 2FONA 3D9DA 1LVCA 1X91A 3MMOA 3D6BA 3X29A 2FP2A 3TZ2A 3Q22A 2ZDYA 4KSAA 5GJVE 1Y8PA 2YYMA 1X8ZA 4KSFA 2BU2A 1SIRA 4JIOA 3TZ0A 5BRKA 5M4NA 2CJ7A 2FP1A 3F29A 4Q1OA 1OAHA 4Q5CA 3PFDA 3D1IA 2ZAFA 2F6LA 3X0YA 5B5WA 3S7WA 2D29A 1EGCA 2QR4A 5EZ3A 1SC5A 3P4TA 4X28A 4LQQB 1XFXA 3TTBA 3MPIA 4F0XA 1UKWA 3II9A 1Y8OA 1T9GA 4HR3A 2LFWA 2YGWA 2C12A 4Q5BA 3SCEA 4FF2A 1PI1A 2YYLA 4AI6A 3C3LA 2BU5A 1XFVA 2VIGA 4G5EA 3RKHA 2XS1A 4LQSB 4P79A 4AKIA 2Z1QA 4Q17A 3MXLA 3LG1A 2IX6A 4QICA 2EC5A 4U83A 4L3ZA 3M9VA 1K93A 2BU8A 3GM6A 2J7AA 4G97A 4ZXVA 3C2PA 2ZKJA 2YYJA 4L3XA 5K3HA 1XFWA 4FF4A 3D2RA 4KCFA 3UBRA 4H81A 3MPJA 3D9EA 3Q0AA 4KS9A 3D9FA 1SIQA 1S26A 2R0NA 2VR0A 1XG2B 3CRLA 3L1TA 5K3GA 2C0UA 5M4MA 4WJYA 2ZDXA 2OJQA 4MPEA 1FS7A 2RF7A 3D9GA 4W9UA 5M4KA 1GU6A 3MDEA 3GNCA 1EGDA 1UDYA 2REHA 3OWAA 2CX9A 2RDZA 3VADA 1XFYA 3AFEA 3X0XA 1WS9A 1RJ1A 4DOYA 2CJ4A 3KMLA 3C46A 1JM6A 1FS8A 4FF3A 1SK6A 5K3JA 1PK0A 4X28C
chains in the Genus database with same CATH topology
3BNGA 2OR0A 4N5FA 2DVLA 2R0MA 4JEKA 1QDBA 3BNJA 3TORA 2YYIA 2A1TA 5K3IA 3BNHA 3OIBA 2PG0A 2JBRA 4ZYJA 2YYKA 4XVXA 4L38A 3EONA 3MKHA 2OT4A 2IX5A 3NF4A 2ZO5A 4IV6A 4L1FA 4M9AA 3SF6A 1U8VA 1R2JA 1JQIA 3BNFA 3LGQA 4NXLA 2YYGA 1EGEA 3GQTA 3EOMA 1FS9A 2DDHA 2JIFA 3AFFA 4KTOA 3HWCA 4O5MA 1W07A 4OO2A 3OWMA 3FCJA 2JBSA 2WBIA 1RX0A 4L3YA 4P13A 4IRNA 3FO3A 4Q0TA 1BUCA 2E80A 4Q4UA 2EBAA 2E81A 4RM7A 2UXWA 3R7KA 1IVHA 3B96A 3SWOA 3SXQA 1IS2A 2JBTA 2RFQA 3MDDA 3UU9A 2FONA 3D9DA 3MMOA 3D6BA 2YYMA 1SIRA 3F29A 4Q1OA 1OAHA 4Q5CA 3PFDA 3D1IA 2ZAFA 3X0YA 3S7WA 2D29A 1EGCA 3P4TA 4X28A 3TTBA 3MPIA 1UKWA 3II9A 1T9GA 4HR3A 4Q5BA 2C12A 3SCEA 2YYLA 3RKHA 2VIGA 4G5EA 2Z1QA 4Q17A 3MXLA 3LG1A 2IX6A 4U83A 4L3ZA 3M9VA 3GM6A 2J7AA 4ZXVA 2YYJA 4L3XA 5K3HA 4KCFA 3UBRA 3MPJA 3D9EA 3D9FA 1SIQA 2VR0A 2R0NA 3L1TA 5K3GA 2C0UA 4WJYA 1FS7A 2RF7A 3D9GA 4W9UA 1GU6A 3MDEA 3GNCA 1EGDA 1UDYA 2REHA 3OWAA 2CX9A 2RDZA 3AFEA 3X0XA 1WS9A 4DOYA 1FS8A 5K3JA 4X28C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BNG A;  2OR0 A;  4N5F A;  2DVL A;  2R0M A;  4JEK A;  1QDB A;  3BNJ A;  3TOR A;  2YYI A;  2A1T A;  5K3I A;  3BNH A;  3OIB A;  2PG0 A;  2JBR A;  4ZYJ A;  2YYK A;  4XVX A;  4L38 A;  3EON A;  3MKH A;  2OT4 A;  2IX5 A;  3NF4 A;  2ZO5 A;  4IV6 A;  4L1F A;  4M9A A;  3SF6 A;  1U8V A;  1R2J A;  1JQI A;  3BNF A;  3LGQ A;  4NXL A;  2YYG A;  1EGE A;  3GQT A;  3EOM A;  1FS9 A;  2DDH A;  2JIF A;  3AFF A;  4KTO A;  3HWC A;  4O5M A;  1W07 A;  4OO2 A;  3OWM A;  3FCJ A;  2JBS A;  2WBI A;  1RX0 A;  4L3Y A;  4P13 A;  4IRN A;  3FO3 A;  4Q0T A;  1BUC A;  2E80 A;  4Q4U A;  2EBA A;  2E81 A;  4RM7 A;  2UXW A;  3R7K A;  1IVH A;  3B96 A;  3SWO A;  3SXQ A;  1IS2 A;  2JBT A;  2RFQ A;  3MDD A;  3UU9 A;  2FON A;  3D9D A;  3MMO A;  3D6B A;  2YYM A;  1SIR A;  3F29 A;  4Q1O A;  1OAH A;  4Q5C A;  3PFD A;  3D1I A;  2ZAF A;  3X0Y A;  3S7W A;  2D29 A;  1EGC A;  3P4T A;  4X28 A;  3TTB A;  3MPI A;  1UKW A;  3II9 A;  1T9G A;  4HR3 A;  4Q5B A;  2C12 A;  3SCE A;  2YYL A;  3RKH A;  2VIG A;  4G5E A;  2Z1Q A;  4Q17 A;  3MXL A;  3LG1 A;  2IX6 A;  4U83 A;  4L3Z A;  3M9V A;  3GM6 A;  2J7A A;  4ZXV A;  2YYJ A;  4L3X A;  5K3H A;  4KCF A;  3UBR A;  3MPJ A;  3D9E A;  3D9F A;  1SIQ A;  2VR0 A;  2R0N A;  3L1T A;  5K3G A;  2C0U A;  4WJY A;  1FS7 A;  2RF7 A;  3D9G A;  4W9U A;  1GU6 A;  3MDE A;  3GNC A;  1EGD A;  1UDY A;  2REH A;  3OWA A;  2CX9 A;  2RDZ A;  3AFE A;  3X0X A;  1WS9 A;  4DOY A;  1FS8 A;  5K3J A;  4X28 C; 
#chains in the Genus database with same CATH topology
 3BNG A;  3Q23 A;  2Q8H A;  5J6A A;  3VKG A;  2OR0 A;  3DJL A;  4N5F A;  5GJW E;  2DVL A;  2R0M A;  4JEK A;  1QDB A;  2AZE A;  2GBB A;  4H85 A;  2Q8I A;  2XQR B;  3BNJ A;  3TOR A;  4AKH A;  4FF1 A;  2YYI A;  2A1T A;  5K3I A;  3BNH A;  3OIB A;  2PG0 A;  2JBR A;  3TZ5 A;  2CJ5 A;  5B6B A;  2Q8G A;  4ZYJ A;  2YYK A;  4J1V A;  4XVX A;  4L38 A;  2OEV A;  3EON A;  3MKH A;  2E0A A;  2EBF X;  2OT4 A;  2IX5 A;  3NF4 A;  2CJ6 A;  2ZO5 A;  4IV6 A;  1RJ4 A;  4L1F A;  4M9A A;  2R03 A;  5BRM A;  1GKZ A;  3SF6 A;  3Q24 A;  4MP2 A;  1U8V A;  4H7Q A;  1R2J A;  1JQI A;  3BNF A;  3LGQ A;  4JIZ A;  4NXL A;  2YYG A;  1EGE A;  3GQT A;  4V25 A;  5B5V A;  3EOM A;  1FS9 A;  1XFZ A;  1K90 A;  2DDH A;  4V26 A;  2JIF A;  3AFF A;  4KTO A;  1RP3 A;  3HWC A;  4DZY A;  3CE2 A;  5J71 A;  4O5M A;  4AKG A;  2BTZ A;  2PO4 A;  1W07 A;  4MPC A;  2OEX A;  1Y8N A;  4HKS A;  2R05 A;  3OWM A;  4OO2 A;  4E01 A;  3FCJ A;  3VKH A;  3U33 A;  2JBS A;  4FZ4 A;  2WBI A;  2XS8 A;  1RX0 A;  2CJ8 A;  4L3Y A;  3N0R A;  4MP7 A;  4P13 A;  2BU7 A;  4IRN A;  2HJN A;  3FO3 A;  4HKR A;  2PNR A;  2EBH X;  4MPN A;  4E02 A;  4Q0T A;  1BUC A;  2E80 A;  5M4P A;  4Q4U A;  2EBA A;  2E81 A;  4RM7 A;  2UXW A;  3R7K A;  1IVH A;  3CRK A;  3B96 A;  3SWO A;  3SXQ A;  1R3B A;  1Y0V A;  1IS2 A;  2JBT A;  2R02 A;  2VF1 A;  2Q8F A;  1K8T A;  3TZ4 A;  2RFQ A;  1GJV A;  3MDD A;  1X90 A;  1XFU A;  2BU6 A;  2AO2 A;  1GKX A;  3UU9 A;  4E00 A;  2FON A;  3D9D A;  1LVC A;  1X91 A;  3MMO A;  3D6B A;  3X29 A;  2FP2 A;  3TZ2 A;  3Q22 A;  2ZDY A;  4KSA A;  5GJV E;  1Y8P A;  2YYM A;  1X8Z A;  4KSF A;  2BU2 A;  1SIR A;  4JIO A;  3TZ0 A;  5BRK A;  5M4N A;  2CJ7 A;  2FP1 A;  3F29 A;  4Q1O A;  1OAH A;  4Q5C A;  3PFD A;  3D1I A;  2ZAF A;  2F6L A;  3X0Y A;  5B5W A;  3S7W A;  2D29 A;  1EGC A;  2QR4 A;  5EZ3 A;  1SC5 A;  3P4T A;  4X28 A;  4LQQ B;  1XFX A;  3TTB A;  3MPI A;  4F0X A;  1UKW A;  3II9 A;  1Y8O A;  1T9G A;  4HR3 A;  2LFW A;  2YGW A;  2C12 A;  4Q5B A;  3SCE A;  4FF2 A;  1PI1 A;  2YYL A;  4AI6 A;  3C3L A;  2BU5 A;  1XFV A;  2VIG A;  4G5E A;  3RKH A;  2XS1 A;  4LQS B;  4P79 A;  4AKI A;  2Z1Q A;  4Q17 A;  3MXL A;  3LG1 A;  2IX6 A;  4QIC A;  2EC5 A;  4U83 A;  4L3Z A;  3M9V A;  1K93 A;  2BU8 A;  3GM6 A;  2J7A A;  4G97 A;  4ZXV A;  3C2P A;  2ZKJ A;  2YYJ A;  4L3X A;  5K3H A;  1XFW A;  4FF4 A;  3D2R A;  4KCF A;  3UBR A;  4H81 A;  3MPJ A;  3D9E A;  3Q0A A;  4KS9 A;  3D9F A;  1SIQ A;  1S26 A;  2R0N A;  2VR0 A;  1XG2 B;  3CRL A;  3L1T A;  5K3G A;  2C0U A;  5M4M A;  4WJY A;  2ZDX A;  2OJQ A;  4MPE A;  1FS7 A;  2RF7 A;  3D9G A;  4W9U A;  5M4K A;  1GU6 A;  3MDE A;  3GNC A;  1EGD A;  1UDY A;  2REH A;  3OWA A;  2CX9 A;  2RDZ A;  3VAD A;  1XFY A;  3AFE A;  3X0X A;  1WS9 A;  1RJ1 A;  4DOY A;  2CJ4 A;  3KML A;  3C46 A;  1JM6 A;  1FS8 A;  4FF3 A;  1SK6 A;  5K3J A;  1PK0 A;  4X28 C; 
#chains in the Genus database with same CATH homology
 3BNG A;  2OR0 A;  4N5F A;  2DVL A;  2R0M A;  4JEK A;  1QDB A;  3BNJ A;  3TOR A;  2YYI A;  2A1T A;  5K3I A;  3BNH A;  3OIB A;  2PG0 A;  2JBR A;  4ZYJ A;  2YYK A;  4XVX A;  4L38 A;  3EON A;  3MKH A;  2OT4 A;  2IX5 A;  3NF4 A;  2ZO5 A;  4IV6 A;  4L1F A;  4M9A A;  3SF6 A;  1U8V A;  1R2J A;  1JQI A;  3BNF A;  3LGQ A;  4NXL A;  2YYG A;  1EGE A;  3GQT A;  3EOM A;  1FS9 A;  2DDH A;  2JIF A;  3AFF A;  4KTO A;  3HWC A;  4O5M A;  1W07 A;  4OO2 A;  3OWM A;  3FCJ A;  2JBS A;  2WBI A;  1RX0 A;  4L3Y A;  4P13 A;  4IRN A;  3FO3 A;  4Q0T A;  1BUC A;  2E80 A;  4Q4U A;  2EBA A;  2E81 A;  4RM7 A;  2UXW A;  3R7K A;  1IVH A;  3B96 A;  3SWO A;  3SXQ A;  1IS2 A;  2JBT A;  2RFQ A;  3MDD A;  3UU9 A;  2FON A;  3D9D A;  3MMO A;  3D6B A;  2YYM A;  1SIR A;  3F29 A;  4Q1O A;  1OAH A;  4Q5C A;  3PFD A;  3D1I A;  2ZAF A;  3X0Y A;  3S7W A;  2D29 A;  1EGC A;  3P4T A;  4X28 A;  3TTB A;  3MPI A;  1UKW A;  3II9 A;  1T9G A;  4HR3 A;  4Q5B A;  2C12 A;  3SCE A;  2YYL A;  3RKH A;  2VIG A;  4G5E A;  2Z1Q A;  4Q17 A;  3MXL A;  3LG1 A;  2IX6 A;  4U83 A;  4L3Z A;  3M9V A;  3GM6 A;  2J7A A;  4ZXV A;  2YYJ A;  4L3X A;  5K3H A;  4KCF A;  3UBR A;  3MPJ A;  3D9E A;  3D9F A;  1SIQ A;  2VR0 A;  2R0N A;  3L1T A;  5K3G A;  2C0U A;  4WJY A;  1FS7 A;  2RF7 A;  3D9G A;  4W9U A;  1GU6 A;  3MDE A;  3GNC A;  1EGD A;  1UDY A;  2REH A;  3OWA A;  2CX9 A;  2RDZ A;  3AFE A;  3X0X A;  1WS9 A;  4DOY A;  1FS8 A;  5K3J A;  4X28 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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