4KDLA

Crystal structure of p97/vcp n in complex with otu1 ubxl
Total Genus 53
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
53
sequence length
174
structure length
174
Chain Sequence
PNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Signaling protein/hydrolase
source organism Homo sapiens
publication title Structural Basis for Ovarian Tumor Domain-containing Protein 1 (OTU1) Binding to p97/Valosin-containing Protein (VCP).
pubmed doi rcsb
molecule keywords Transitional endoplasmic reticulum ATPase
total genus 53
structure length 174
sequence length 174
ec nomenclature ec 3.6.4.6: Vesicle-fusing ATPase.
pdb deposition date 2013-04-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02359 CDC48_N Cell division protein 48 (CDC48), N-terminal domain
A PF02933 CDC48_2 Cell division protein 48 (CDC48), domain 2
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 4kdlA01
3.10.330.10 Alpha Beta Roll Vcp-like ATPase; Chain A, domain 2 Vcp-like ATPase; Chain A, domain 2 4kdlA02
2E7ZA 1PPYA 2JIOA 1WCMA 4GA6A 1CZ4A 1QCSA 2VPZA 3QQ8A 3GTGA 2E2IA 2JIRA 4AOKB 2R92A 4KDIA 1ZC1A 1DMSA 2WAQA 5FTNA 5FTLA 1IW7D 3GTMA 3GTPA 5T5ID 1E5VA 4D7ZB 2C45A 1R27A 1H0HA 2JA5A 2VUMA 3TIWA 1TWHA 1KQFA 1PYQA 1QDNA 1YLEA 1Y1WA 1VC3B 4AYBA 1UHEA 3GTQA 1SFOA 2JA6A 1Q16A 1KQGA 1PYUB 1CZ5A 2JIMA 1H5NA 2NVYA 1Y4ZA 3QQ7A 2EEOB 2DMRA 2Y0SA 3HU2A 2JIPA 3HU3A 4KODA 3HKZA 2NVXA 3H0GA 1FDOA 3DMRA 1PT0A 2PMZA 1EU1A 2VPYA 1TWGA 1TWCA 3IR5A 3QWZA 4KO8A 2YU9A 5DYGA 2B63A 1UHDA 2KI8A 2V45A 1PQEA 5FTMA 2YUJA 1I50A 4AAYA 1TWAA 3GTOA 4DMRA 1CR5A 1E32A 1TMOA 5EPPA 1I3QA 4AZDA 2JIQA 2R7ZA 3IR6A 2VPXA 3O5AA 3GTLA 2V3VA 5T5MD 4C2MA 1AA6A 2E2HA 3PLXB 3QC8A 1DMRA 5C18A 5FTKA 1OGYA 4AONB 4CRZA 1R9TA 3GTKA 2JV2A 1S3SA 5GLFA 1WLFA 2R93A 1FDIA 1PQFA 3HU1A 4RV0A 1E60A 2WB1A 4CS0A 5FTJA 3FKIA 3CQZA 3GTJA 1PT1A 3ML1A 2NAPA 4KLNA 1G8JA 5DYIA 1PQHA 3OUGA 4GA5A 2IV2X 5C1BA 1K83A 2NYAA 3IR7A 2JA7A 3CF2A 4KDLA 4QIWA 3TM7B 1TWFA 4CRYG 1R7RA 1Y5IA 2PJHB 1E61A 5B6CA 1E18A 2VPWA 1Y1VA 1SIWA 1AW8B 1G8KA
chains in the Genus database with same CATH superfamily
2E7ZA 2A69D 1PPYA 2JIOA 1WCMA 4GA6A 1CZ4A 1QCSA 2VPZA 3QQ8A 3GTGA 2E2IA 2LW6A 2JIRA 4AOKB 2R92A 3X2NA 4KDIA 1ZC1A 3X2LA 3ZGZA 1DMSA 2WAQA 5FTNA 5FTLA 1IW7D 3GTMA 1OA7A 4ARIA 3GTPA 2A68D 1E5VA 5T5ID 4D7ZB 1I9GA 2C45A 1WC2A 1R27A 1H0HA 2G6GA 4FERA 2GFAA 4JS7A 3X2GA 2JA5A 2VUMA 1HD5A 3TIWA 3X2MA 1BW3A 4FG4A 2O5JD 2Q1AX 3SUKA 3LGAA 1TWHA 5D6XA 5CD1A 3ZJTA 3X2PA 2HCZX 1KQFA 3SULA 1PYQA 1QDNA 1YLEA 2Q18X 4FIBA 2A6ED 2B25A 3BQBA 1Y1WA 3LHDA 1VC3B 4AYBA 3CZBA 4ZM7A 5CCXA 1BW4A 1UHEA 3GTQA 1SFOA 2JA6A 1Q16A 3FPTA 3MB5A 1KQGA 5GLYA 1PYUB 1CZ5A 2JIMA 1H5NA 1N10A 3X2JA 2BE5D 2QQRA 2NVYA 1Y4ZA 4L48A 2PI8A 3QQ7A 2EEOB 2DMRA 2Y0SA 5CCBA 3HU2A 4FFTA 2Q1DX 2KQAA 2JIPA 3HU3A 4KODA 4UC4A 3HKZA 2G5DA 3X2HA 2NVXA 3ZJUA 3H0GA 1FDOA 3DMRA 1PT0A 3ENGA 2PMZA 3M3GA 1EU1A 3ZJVA 2VPYA 1TWGA 1TWCA 3IR5A 3QWZA 4KO8A 1OA9A 5DYGA 2YU9A 4JCWA 2B63A 4AQ7A 2PWYA 1UHDA 2KI8A 2V45A 1PQEA 2YUJA 5FTMA 2CW0D 1O54A 1I50A 3FPRA 4AAYA 1TWAA 4NOHA 4JP7A 3GTOA 4DMRA 1CR5A 1E32A 1TMOA 5EPPA 1I3QA 4AZDA 2JIQA 2R7ZA 5D6WA 3IR6A 2VPXA 3O5AA 3GTLA 2V3VA 2PICA 5T5MD 4C2MA 1AA6A 3FPUA 4ARCA 2E2HA 3PLXB 3QC8A 1DMRA 2Q1CX 5C18A 5FTKA 1OGYA 3X2IA 4AONB 3X2OA 4CRZA 1R9TA 3GTKA 5ERGB 2JV2A 1S3SA 5GLFA 2GF7A 4AVRA 1WLFA 5GLXA 2R93A 2Q19X 1FDIA 1PQFA 2QQSA 3HU1A 4RV0A 4ENGA 2MM0A 4AS1A 1E60A 2PNWA 2WB1A 4CS0A 4FG2A 5FTJA 3FKIA 2PJJA 3CQZA 3GTJA 2KY9A 2YVLA 1PT1A 3ML1A 1ZYRD 2NAPA 4KLNA 3SUJA 1G8JA 2AE0X 5DYIA 1SMYD 4JP6A 1PQHA 4CQNA 3OUGA 4GA5A 2IV2X 5C1BA 1K83A 2NYAA 3IR7A 3X2KA 2JA7A 5D6YA 3CF2A 2A6HD 4KDLA 5EQJB 4QIWA 5GM9A 3TM7B 1TWFA 4CRYG 3SUMA 1YNND 1R7RA 1L8FA 1Y5IA 5H4UA 2BH0A 2MM2A 2PJHB 1E61A 5B6CA 1YNJD 1E18A 3D30A 2VPWA 2ENGA 1Y1VA 2GAEA 4JJOA 2XDPA 1SIWA 1AW8B 1G8KA
chains in the Genus database with same CATH topology
2E7ZA 2A69D 1PPYA 2JIOA 1WCMA 4GA6A 1CZ4A 1QCSA 2VPZA 3QQ8A 3GTGA 2E2IA 2LW6A 2JIRA 4AOKB 2R92A 4KDIA 1ZC1A 3ZGZA 1DMSA 2WAQA 5FTNA 5FTLA 1IW7D 3GTMA 4ARIA 3GTPA 2A68D 1E5VA 5T5ID 4D7ZB 1I9GA 2C45A 2G6GA 1R27A 1H0HA 2GFAA 2JA5A 2VUMA 3TIWA 2O5JD 2Q1AX 3LGAA 5D6XA 1TWHA 5CD1A 3ZJTA 1KQFA 1PYQA 1QDNA 1YLEA 2Q18X 4FIBA 2A6ED 2B25A 3BQBA 1Y1WA 3LHDA 1VC3B 4AYBA 3CZBA 5CCXA 1UHEA 3GTQA 1SFOA 2JA6A 1Q16A 3FPTA 3MB5A 1KQGA 1PYUB 1CZ5A 2JIMA 1H5NA 2BE5D 2QQRA 2NVYA 1Y4ZA 2PI8A 3QQ7A 2EEOB 2DMRA 2Y0SA 5CCBA 3HU2A 2Q1DX 2JIPA 3HU3A 4KODA 4UC4A 3HKZA 2G5DA 2NVXA 3ZJUA 3H0GA 1FDOA 3DMRA 1PT0A 2PMZA 1EU1A 3ZJVA 2VPYA 1TWGA 1TWCA 3IR5A 3QWZA 4KO8A 2YU9A 5DYGA 2B63A 4AQ7A 2PWYA 1UHDA 2KI8A 2V45A 1PQEA 2YUJA 5FTMA 2CW0D 1O54A 1I50A 3FPRA 4AAYA 1TWAA 4NOHA 3GTOA 4DMRA 1CR5A 1E32A 1TMOA 5EPPA 1I3QA 4AZDA 2JIQA 2R7ZA 5D6WA 3IR6A 2VPXA 3O5AA 3GTLA 2V3VA 2PICA 5T5MD 4C2MA 1AA6A 3FPUA 4ARCA 2E2HA 3PLXB 3QC8A 1DMRA 2Q1CX 5C18A 5FTKA 1OGYA 4AONB 4CRZA 1R9TA 3GTKA 5ERGB 2JV2A 1S3SA 5GLFA 2GF7A 1WLFA 2Q19X 2R93A 2QQSA 1FDIA 1PQFA 3HU1A 4RV0A 2MM0A 4AS1A 1E60A 2PNWA 2WB1A 4CS0A 5FTJA 3FKIA 2PJJA 3CQZA 3GTJA 2KY9A 2YVLA 1PT1A 3ML1A 1ZYRD 2NAPA 4KLNA 1G8JA 2AE0X 5DYIA 1SMYD 1PQHA 4CQNA 3OUGA 4GA5A 2IV2X 5C1BA 1K83A 2NYAA 3IR7A 2JA7A 5D6YA 3CF2A 2A6HD 4KDLA 5EQJB 4QIWA 3TM7B 1TWFA 4CRYG 1YNND 1R7RA 1Y5IA 2MM2A 2PJHB 1E61A 5B6CA 1YNJD 1E18A 2VPWA 1Y1VA 2GAEA 2XDPA 1SIWA 1AW8B 1G8KA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2E7Z A;  1PPY A;  2JIO A;  1WCM A;  4GA6 A;  1CZ4 A;  1QCS A;  2VPZ A;  3QQ8 A;  3GTG A;  2E2I A;  2JIR A;  4AOK B;  2R92 A;  4KDI A;  1ZC1 A;  1DMS A;  2WAQ A;  5FTN A;  5FTL A;  1IW7 D;  3GTM A;  3GTP A;  5T5I D;  1E5V A;  4D7Z B;  2C45 A;  1R27 A;  1H0H A;  2JA5 A;  2VUM A;  3TIW A;  1TWH A;  1KQF A;  1PYQ A;  1QDN A;  1YLE A;  1Y1W A;  1VC3 B;  4AYB A;  1UHE A;  3GTQ A;  1SFO A;  2JA6 A;  1Q16 A;  1KQG A;  1PYU B;  1CZ5 A;  2JIM A;  1H5N A;  2NVY A;  1Y4Z A;  3QQ7 A;  2EEO B;  2DMR A;  2Y0S A;  3HU2 A;  2JIP A;  3HU3 A;  4KOD A;  3HKZ A;  2NVX A;  3H0G A;  1FDO A;  3DMR A;  1PT0 A;  2PMZ A;  1EU1 A;  2VPY A;  1TWG A;  1TWC A;  3IR5 A;  3QWZ A;  4KO8 A;  2YU9 A;  5DYG A;  2B63 A;  1UHD A;  2KI8 A;  2V45 A;  1PQE A;  5FTM A;  2YUJ A;  1I50 A;  4AAY A;  1TWA A;  3GTO A;  4DMR A;  1CR5 A;  1E32 A;  1TMO A;  5EPP A;  1I3Q A;  4AZD A;  2JIQ A;  2R7Z A;  3IR6 A;  2VPX A;  3O5A A;  3GTL A;  2V3V A;  5T5M D;  4C2M A;  1AA6 A;  2E2H A;  3PLX B;  3QC8 A;  1DMR A;  5C18 A;  5FTK A;  1OGY A;  4AON B;  4CRZ A;  1R9T A;  3GTK A;  2JV2 A;  1S3S A;  5GLF A;  1WLF A;  2R93 A;  1FDI A;  1PQF A;  3HU1 A;  4RV0 A;  1E60 A;  2WB1 A;  4CS0 A;  5FTJ A;  3FKI A;  3CQZ A;  3GTJ A;  1PT1 A;  3ML1 A;  2NAP A;  4KLN A;  1G8J A;  5DYI A;  1PQH A;  3OUG A;  4GA5 A;  2IV2 X;  5C1B A;  1K83 A;  2NYA A;  3IR7 A;  2JA7 A;  3CF2 A;  4KDL A;  4QIW A;  3TM7 B;  1TWF A;  4CRY G;  1R7R A;  1Y5I A;  2PJH B;  1E61 A;  5B6C A;  1E18 A;  2VPW A;  1Y1V A;  1SIW A;  1AW8 B;  1G8K A; 
#chains in the Genus database with same CATH topology
 2E7Z A;  2A69 D;  1PPY A;  2JIO A;  1WCM A;  4GA6 A;  1CZ4 A;  1QCS A;  2VPZ A;  3QQ8 A;  3GTG A;  2E2I A;  2LW6 A;  2JIR A;  4AOK B;  2R92 A;  3X2N A;  4KDI A;  1ZC1 A;  3X2L A;  3ZGZ A;  1DMS A;  2WAQ A;  5FTN A;  5FTL A;  1IW7 D;  3GTM A;  1OA7 A;  4ARI A;  3GTP A;  2A68 D;  1E5V A;  5T5I D;  4D7Z B;  1I9G A;  2C45 A;  1WC2 A;  1R27 A;  1H0H A;  2G6G A;  4FER A;  2GFA A;  4JS7 A;  3X2G A;  2JA5 A;  2VUM A;  1HD5 A;  3TIW A;  3X2M A;  1BW3 A;  4FG4 A;  2O5J D;  2Q1A X;  3SUK A;  3LGA A;  1TWH A;  5D6X A;  5CD1 A;  3ZJT A;  3X2P A;  2HCZ X;  1KQF A;  3SUL A;  1PYQ A;  1QDN A;  1YLE A;  2Q18 X;  4FIB A;  2A6E D;  2B25 A;  3BQB A;  1Y1W A;  3LHD A;  1VC3 B;  4AYB A;  3CZB A;  4ZM7 A;  5CCX A;  1BW4 A;  1UHE A;  3GTQ A;  1SFO A;  2JA6 A;  1Q16 A;  3FPT A;  3MB5 A;  1KQG A;  5GLY A;  1PYU B;  1CZ5 A;  2JIM A;  1H5N A;  1N10 A;  3X2J A;  2BE5 D;  2QQR A;  2NVY A;  1Y4Z A;  4L48 A;  2PI8 A;  3QQ7 A;  2EEO B;  2DMR A;  2Y0S A;  5CCB A;  3HU2 A;  4FFT A;  2Q1D X;  2KQA A;  2JIP A;  3HU3 A;  4KOD A;  4UC4 A;  3HKZ A;  2G5D A;  3X2H A;  2NVX A;  3ZJU A;  3H0G A;  1FDO A;  3DMR A;  1PT0 A;  3ENG A;  2PMZ A;  3M3G A;  1EU1 A;  3ZJV A;  2VPY A;  1TWG A;  1TWC A;  3IR5 A;  3QWZ A;  4KO8 A;  1OA9 A;  5DYG A;  2YU9 A;  4JCW A;  2B63 A;  4AQ7 A;  2PWY A;  1UHD A;  2KI8 A;  2V45 A;  1PQE A;  2YUJ A;  5FTM A;  2CW0 D;  1O54 A;  1I50 A;  3FPR A;  4AAY A;  1TWA A;  4NOH A;  4JP7 A;  3GTO A;  4DMR A;  1CR5 A;  1E32 A;  1TMO A;  5EPP A;  1I3Q A;  4AZD A;  2JIQ A;  2R7Z A;  5D6W A;  3IR6 A;  2VPX A;  3O5A A;  3GTL A;  2V3V A;  2PIC A;  5T5M D;  4C2M A;  1AA6 A;  3FPU A;  4ARC A;  2E2H A;  3PLX B;  3QC8 A;  1DMR A;  2Q1C X;  5C18 A;  5FTK A;  1OGY A;  3X2I A;  4AON B;  3X2O A;  4CRZ A;  1R9T A;  3GTK A;  5ERG B;  2JV2 A;  1S3S A;  5GLF A;  2GF7 A;  4AVR A;  1WLF A;  5GLX A;  2R93 A;  2Q19 X;  1FDI A;  1PQF A;  2QQS A;  3HU1 A;  4RV0 A;  4ENG A;  2MM0 A;  4AS1 A;  1E60 A;  2PNW A;  2WB1 A;  4CS0 A;  4FG2 A;  5FTJ A;  3FKI A;  2PJJ A;  3CQZ A;  3GTJ A;  2KY9 A;  2YVL A;  1PT1 A;  3ML1 A;  1ZYR D;  2NAP A;  4KLN A;  3SUJ A;  1G8J A;  2AE0 X;  5DYI A;  1SMY D;  4JP6 A;  1PQH A;  4CQN A;  3OUG A;  4GA5 A;  2IV2 X;  5C1B A;  1K83 A;  2NYA A;  3IR7 A;  3X2K A;  2JA7 A;  5D6Y A;  3CF2 A;  2A6H D;  4KDL A;  5EQJ B;  4QIW A;  5GM9 A;  3TM7 B;  1TWF A;  4CRY G;  3SUM A;  1YNN D;  1R7R A;  1L8F A;  1Y5I A;  5H4U A;  2BH0 A;  2MM2 A;  2PJH B;  1E61 A;  5B6C A;  1YNJ D;  1E18 A;  3D30 A;  2VPW A;  2ENG A;  1Y1V A;  2GAE A;  4JJO A;  2XDP A;  1SIW A;  1AW8 B;  1G8K A; 
#chains in the Genus database with same CATH homology
 2E7Z A;  2A69 D;  1PPY A;  2JIO A;  1WCM A;  4GA6 A;  1CZ4 A;  1QCS A;  2VPZ A;  3QQ8 A;  3GTG A;  2E2I A;  2LW6 A;  2JIR A;  4AOK B;  2R92 A;  4KDI A;  1ZC1 A;  3ZGZ A;  1DMS A;  2WAQ A;  5FTN A;  5FTL A;  1IW7 D;  3GTM A;  4ARI A;  3GTP A;  2A68 D;  1E5V A;  5T5I D;  4D7Z B;  1I9G A;  2C45 A;  2G6G A;  1R27 A;  1H0H A;  2GFA A;  2JA5 A;  2VUM A;  3TIW A;  2O5J D;  2Q1A X;  3LGA A;  5D6X A;  1TWH A;  5CD1 A;  3ZJT A;  1KQF A;  1PYQ A;  1QDN A;  1YLE A;  2Q18 X;  4FIB A;  2A6E D;  2B25 A;  3BQB A;  1Y1W A;  3LHD A;  1VC3 B;  4AYB A;  3CZB A;  5CCX A;  1UHE A;  3GTQ A;  1SFO A;  2JA6 A;  1Q16 A;  3FPT A;  3MB5 A;  1KQG A;  1PYU B;  1CZ5 A;  2JIM A;  1H5N A;  2BE5 D;  2QQR A;  2NVY A;  1Y4Z A;  2PI8 A;  3QQ7 A;  2EEO B;  2DMR A;  2Y0S A;  5CCB A;  3HU2 A;  2Q1D X;  2JIP A;  3HU3 A;  4KOD A;  4UC4 A;  3HKZ A;  2G5D A;  2NVX A;  3ZJU A;  3H0G A;  1FDO A;  3DMR A;  1PT0 A;  2PMZ A;  1EU1 A;  3ZJV A;  2VPY A;  1TWG A;  1TWC A;  3IR5 A;  3QWZ A;  4KO8 A;  2YU9 A;  5DYG A;  2B63 A;  4AQ7 A;  2PWY A;  1UHD A;  2KI8 A;  2V45 A;  1PQE A;  2YUJ A;  5FTM A;  2CW0 D;  1O54 A;  1I50 A;  3FPR A;  4AAY A;  1TWA A;  4NOH A;  3GTO A;  4DMR A;  1CR5 A;  1E32 A;  1TMO A;  5EPP A;  1I3Q A;  4AZD A;  2JIQ A;  2R7Z A;  5D6W A;  3IR6 A;  2VPX A;  3O5A A;  3GTL A;  2V3V A;  2PIC A;  5T5M D;  4C2M A;  1AA6 A;  3FPU A;  4ARC A;  2E2H A;  3PLX B;  3QC8 A;  1DMR A;  2Q1C X;  5C18 A;  5FTK A;  1OGY A;  4AON B;  4CRZ A;  1R9T A;  3GTK A;  5ERG B;  2JV2 A;  1S3S A;  5GLF A;  2GF7 A;  1WLF A;  2Q19 X;  2R93 A;  2QQS A;  1FDI A;  1PQF A;  3HU1 A;  4RV0 A;  2MM0 A;  4AS1 A;  1E60 A;  2PNW A;  2WB1 A;  4CS0 A;  5FTJ A;  3FKI A;  2PJJ A;  3CQZ A;  3GTJ A;  2KY9 A;  2YVL A;  1PT1 A;  3ML1 A;  1ZYR D;  2NAP A;  4KLN A;  1G8J A;  2AE0 X;  5DYI A;  1SMY D;  1PQH A;  4CQN A;  3OUG A;  4GA5 A;  2IV2 X;  5C1B A;  1K83 A;  2NYA A;  3IR7 A;  2JA7 A;  5D6Y A;  3CF2 A;  2A6H D;  4KDL A;  5EQJ B;  4QIW A;  3TM7 B;  1TWF A;  4CRY G;  1YNN D;  1R7R A;  1Y5I A;  2MM2 A;  2PJH B;  1E61 A;  5B6C A;  1YNJ D;  1E18 A;  2VPW A;  1Y1V A;  2GAE A;  2XDP A;  1SIW A;  1AW8 B;  1G8K A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...