4KDLA

Crystal structure of p97/vcp n in complex with otu1 ubxl
Total Genus 53
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
53
sequence length
174
structure length
174
Chain Sequence
PNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein/hydrolase
molecule keywords Transitional endoplasmic reticulum ATPase
publication title Structural Basis for Ovarian Tumor Domain-containing Protein 1 (OTU1) Binding to p97/Valosin-containing Protein (VCP).
pubmed doi rcsb
source organism Homo sapiens
total genus 53
structure length 174
sequence length 174
ec nomenclature ec 3.6.4.6: Vesicle-fusing ATPase.
pdb deposition date 2013-04-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02359 CDC48_N Cell division protein 48 (CDC48), N-terminal domain
A PF02933 CDC48_2 Cell division protein 48 (CDC48), domain 2
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 4kdlA01
3.10.330.10 Alpha Beta Roll Vcp-like ATPase; Chain A, domain 2 Vcp-like ATPase; Chain A, domain 2 4kdlA02
2KI8A 1OGYA 2B63A 2JIRA 2VPXA 1QCSA 2JA6A 5C18A 5B6CA 3PLXB 4RV0A 3O5AA 3H0GA 1AW8B 4GA6A 1TMOA 1Q16A 2DMRA 4QIWA 5DYGA 5T5MD 2YUJA 3GTMA 1SFOA 3HU2A 2E2HA 1FDIA 3HKZA 2C45A 5DYIA 4D7ZB 1VC3B 1Y1WA 1SIWA 1G8KA 1EU1A 2JIOA 2JIPA 2JIQA 2NVXA 2NAPA 5GLFA 3GTJA 2R93A 1UHDA 2WB1A 3TIWA 5FTJA 1ZC1A 2EEOB 4AZDA 3GTGA 1E5VA 5C1BA 2YU9A 4KO8A 2VPWA 1IW7D 3GTPA 3HU1A 4C2MA 1I50A 3OUGA 1YLEA 3QQ8A 1R7RA 1DMSA 2VPYA 1H0HA 5FTNA 3QWZA 1QDNA 1FDOA 1PQFA 3FKIA 1CZ4A 2V3VA 2Y0SA 2R7ZA 4KDLA 1PYUB 5FTMA 4DMRA 4AONB 4KODA 2WAQA 1UHEA 2NYAA 3DMRA 2PMZA 3GTQA 1DMRA 3ML1A 1I3QA 2VPZA 5FTKA 4CRYG 1PPYA 3IR7A 3QQ7A 3QC8A 4KDIA 1PQEA 1TWCA 1H5NA 1Y1VA 1E60A 1KQGA 1CZ5A 2R92A 1TWAA 2PJHB 3GTLA 2E2IA 4AOKB 4CRZA 2JA7A 2NVYA 1KQFA 5T5ID 3IR6A 2VUMA 1TWHA 1E32A 1PQHA 1R27A 5FTLA 1R9TA 4AYBA 4AAYA 3CQZA 4CS0A 3GTKA 2IV2X 1TWGA 1S3SA 1WCMA 3HU3A 2V45A 1PYQA 3CF2A 1G8JA 1E18A 1PT1A 4GA5A 4KLNA 3GTOA 3TM7B 1Y5IA 3IR5A 1WLFA 2E7ZA 1AA6A 1CR5A 1Y4ZA 1E61A 5EPPA 2JV2A 1TWFA 2JIMA 1K83A 2JA5A 1PT0A
chains in the Genus database with same CATH superfamily
2KI8A 1OGYA 2AE0X 2A69D 4JCWA 2B63A 2JIRA 3X2JA 3ZJTA 2VPXA 1QCSA 2JA6A 5C18A 5B6CA 3PLXB 4RV0A 4UC4A 3O5AA 3H0GA 2LW6A 4AQ7A 3FPTA 2ENGA 1AW8B 2CW0D 4GA6A 3ZGZA 1TMOA 2G6GA 1Q16A 2DMRA 4QIWA 5DYGA 5T5MD 2YUJA 2GFAA 2GAEA 3GTMA 1SFOA 3HU2A 2E2HA 1WC2A 1FDIA 3HKZA 2C45A 5DYIA 2HCZX 1YNJD 2Q1AX 4D7ZB 1HD5A 1VC3B 1Y1WA 4FFTA 2Q1CX 1SIWA 1G8KA 1EU1A 1OA9A 4L48A 3X2PA 5CD1A 2JIOA 3X2NA 2JIPA 2PNWA 3X2MA 2JIQA 2NVXA 2PJJA 2NAPA 5GLFA 3X2KA 1ZYRD 3GTJA 4FG4A 2R93A 1UHDA 1ZC1A 2WB1A 5FTJA 2KQAA 2EEOB 3TIWA 5CCBA 2MM0A 2Q19X 4JJOA 4AZDA 5CCXA 3GTGA 1BW3A 1E5VA 3X2IA 2A6HD 5C1BA 3SUMA 2YU9A 5EQJB 5GLXA 4KO8A 2VPWA 3MB5A 3LHDA 1IW7D 1N10A 3GTPA 4ARCA 2B25A 2A6ED 3HU1A 4JS7A 4C2MA 1I50A 3OUGA 5GLYA 1BW4A 3FPRA 1YLEA 3QQ8A 2XDPA 3M3GA 2BH0A 1R7RA 2GF7A 1DMSA 2VPYA 1H0HA 5FTNA 3QWZA 5D6YA 1QDNA 3X2LA 1FDOA 1PQFA 4AS1A 3FKIA 1CZ4A 2V3VA 2PWYA 2Y0SA 2R7ZA 3FPUA 4FIBA 4NOHA 4KDLA 1PYUB 5FTMA 4DMRA 4AONB 3CZBA 2YVLA 5D6XA 4KODA 2WAQA 3ZJUA 1UHEA 2NYAA 2Q18X 3DMRA 2PMZA 1OA7A 3GTQA 1DMRA 3ML1A 1I3QA 2VPZA 5FTKA 4CRYG 1PPYA 3IR7A 3QQ7A 3QC8A 4KDIA 1PQEA 1TWCA 1H5NA 3ZJVA 1Y1VA 2A68D 1E60A 4ENGA 1KQGA 1CZ5A 1SMYD 3SUKA 2PICA 2R92A 1TWAA 2PJHB 3GTLA 4JP7A 4AOKB 4CRZA 2E2IA 5GM9A 2JA7A 1O54A 2Q1DX 2NVYA 1KQFA 5T5ID 3IR6A 2VUMA 2PI8A 2QQRA 1TWHA 2O5JD 1E32A 1PQHA 2G5DA 1R27A 1I9GA 5FTLA 2BE5D 4AVRA 1R9TA 4AYBA 4AAYA 3CQZA 2MM2A 5ERGB 4CS0A 3GTKA 2IV2X 1TWGA 1L8FA 1S3SA 1WCMA 1YNND 3D30A 3HU3A 5D6WA 2V45A 1PYQA 4FERA 3CF2A 1G8JA 1E18A 1PT1A 4GA5A 4KLNA 3X2GA 3GTOA 2KY9A 2QQSA 4CQNA 3TM7B 1Y5IA 5H4UA 3IR5A 4ZM7A 4ARIA 1WLFA 2E7ZA 1AA6A 1CR5A 1Y4ZA 1E61A 5EPPA 2JV2A 3BQBA 3ENGA 1TWFA 4JP6A 2JIMA 4FG2A 1K83A 3X2HA 3X2OA 3LGAA 3SULA 2JA5A 3SUJA 1PT0A
chains in the Genus database with same CATH topology
2KI8A 1OGYA 2AE0X 2A69D 2B63A 2JIRA 3ZJTA 2VPXA 1QCSA 2JA6A 5C18A 5B6CA 3PLXB 4RV0A 4UC4A 3O5AA 3H0GA 2LW6A 4AQ7A 3FPTA 3ZGZA 1AW8B 2CW0D 4GA6A 1TMOA 2G6GA 1Q16A 2DMRA 4QIWA 5DYGA 5T5MD 2YUJA 2GFAA 2GAEA 3GTMA 1SFOA 3HU2A 2E2HA 1FDIA 3HKZA 2C45A 5DYIA 1YNJD 2Q1AX 4D7ZB 1VC3B 1Y1WA 2Q1CX 1SIWA 1G8KA 1EU1A 5CD1A 2JIOA 2JIPA 2PNWA 2JIQA 2NVXA 2PJJA 2NAPA 5GLFA 1ZYRD 3GTJA 2R93A 1UHDA 1ZC1A 2WB1A 5FTJA 3TIWA 2EEOB 5CCBA 2MM0A 2Q19X 4AZDA 5CCXA 3GTGA 1E5VA 2A6HD 5C1BA 2YU9A 5EQJB 4KO8A 2VPWA 3MB5A 3LHDA 1IW7D 3GTPA 4ARCA 2B25A 2A6ED 3HU1A 4C2MA 1I50A 3OUGA 3FPRA 1YLEA 3QQ8A 2XDPA 1R7RA 1DMSA 2VPYA 1H0HA 5FTNA 3QWZA 5D6YA 1QDNA 1FDOA 1PQFA 4AS1A 3FKIA 1CZ4A 2V3VA 2PWYA 2Y0SA 2R7ZA 3FPUA 4FIBA 4NOHA 4KDLA 1PYUB 5FTMA 4DMRA 4AONB 3CZBA 2YVLA 5D6XA 4KODA 2WAQA 3ZJUA 1UHEA 2NYAA 2Q18X 3DMRA 2PMZA 3GTQA 1DMRA 3ML1A 1I3QA 2VPZA 5FTKA 4CRYG 1PPYA 3IR7A 3QQ7A 3QC8A 4KDIA 1PQEA 1TWCA 1H5NA 3ZJVA 1Y1VA 2A68D 1E60A 1KQGA 1CZ5A 1SMYD 2PICA 2R92A 1TWAA 2PJHB 3GTLA 2E2IA 4AOKB 4CRZA 2JA7A 1O54A 2GF7A 2Q1DX 2NVYA 1KQFA 5T5ID 3IR6A 2VUMA 2PI8A 2QQRA 1TWHA 2O5JD 1E32A 1PQHA 2G5DA 1R27A 1I9GA 5FTLA 2BE5D 1R9TA 4AYBA 4AAYA 3CQZA 2MM2A 5ERGB 4CS0A 3GTKA 2IV2X 1TWGA 1S3SA 1WCMA 1YNND 3HU3A 5D6WA 2V45A 1PYQA 3CF2A 1G8JA 1E18A 1PT1A 4GA5A 4KLNA 2KY9A 3GTOA 2QQSA 4CQNA 3TM7B 1Y5IA 3IR5A 4ARIA 1WLFA 2E7ZA 1AA6A 1CR5A 1Y4ZA 1E61A 5EPPA 2JV2A 3BQBA 1TWFA 2JIMA 1K83A 3LGAA 2JA5A 1PT0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KI8 A;  1OGY A;  2B63 A;  2JIR A;  2VPX A;  1QCS A;  2JA6 A;  5C18 A;  5B6C A;  3PLX B;  4RV0 A;  3O5A A;  3H0G A;  1AW8 B;  4GA6 A;  1TMO A;  1Q16 A;  2DMR A;  4QIW A;  5DYG A;  5T5M D;  2YUJ A;  3GTM A;  1SFO A;  3HU2 A;  2E2H A;  1FDI A;  3HKZ A;  2C45 A;  5DYI A;  4D7Z B;  1VC3 B;  1Y1W A;  1SIW A;  1G8K A;  1EU1 A;  2JIO A;  2JIP A;  2JIQ A;  2NVX A;  2NAP A;  5GLF A;  3GTJ A;  2R93 A;  1UHD A;  2WB1 A;  3TIW A;  5FTJ A;  1ZC1 A;  2EEO B;  4AZD A;  3GTG A;  1E5V A;  5C1B A;  2YU9 A;  4KO8 A;  2VPW A;  1IW7 D;  3GTP A;  3HU1 A;  4C2M A;  1I50 A;  3OUG A;  1YLE A;  3QQ8 A;  1R7R A;  1DMS A;  2VPY A;  1H0H A;  5FTN A;  3QWZ A;  1QDN A;  1FDO A;  1PQF A;  3FKI A;  1CZ4 A;  2V3V A;  2Y0S A;  2R7Z A;  4KDL A;  1PYU B;  5FTM A;  4DMR A;  4AON B;  4KOD A;  2WAQ A;  1UHE A;  2NYA A;  3DMR A;  2PMZ A;  3GTQ A;  1DMR A;  3ML1 A;  1I3Q A;  2VPZ A;  5FTK A;  4CRY G;  1PPY A;  3IR7 A;  3QQ7 A;  3QC8 A;  4KDI A;  1PQE A;  1TWC A;  1H5N A;  1Y1V A;  1E60 A;  1KQG A;  1CZ5 A;  2R92 A;  1TWA A;  2PJH B;  3GTL A;  2E2I A;  4AOK B;  4CRZ A;  2JA7 A;  2NVY A;  1KQF A;  5T5I D;  3IR6 A;  2VUM A;  1TWH A;  1E32 A;  1PQH A;  1R27 A;  5FTL A;  1R9T A;  4AYB A;  4AAY A;  3CQZ A;  4CS0 A;  3GTK A;  2IV2 X;  1TWG A;  1S3S A;  1WCM A;  3HU3 A;  2V45 A;  1PYQ A;  3CF2 A;  1G8J A;  1E18 A;  1PT1 A;  4GA5 A;  4KLN A;  3GTO A;  3TM7 B;  1Y5I A;  3IR5 A;  1WLF A;  2E7Z A;  1AA6 A;  1CR5 A;  1Y4Z A;  1E61 A;  5EPP A;  2JV2 A;  1TWF A;  2JIM A;  1K83 A;  2JA5 A;  1PT0 A; 
#chains in the Genus database with same CATH topology
 2KI8 A;  1OGY A;  2AE0 X;  2A69 D;  4JCW A;  2B63 A;  2JIR A;  3X2J A;  3ZJT A;  2VPX A;  1QCS A;  2JA6 A;  5C18 A;  5B6C A;  3PLX B;  4RV0 A;  4UC4 A;  3O5A A;  3H0G A;  2LW6 A;  4AQ7 A;  3FPT A;  2ENG A;  1AW8 B;  2CW0 D;  4GA6 A;  3ZGZ A;  1TMO A;  2G6G A;  1Q16 A;  2DMR A;  4QIW A;  5DYG A;  5T5M D;  2YUJ A;  2GFA A;  2GAE A;  3GTM A;  1SFO A;  3HU2 A;  2E2H A;  1WC2 A;  1FDI A;  3HKZ A;  2C45 A;  5DYI A;  2HCZ X;  1YNJ D;  2Q1A X;  4D7Z B;  1HD5 A;  1VC3 B;  1Y1W A;  4FFT A;  2Q1C X;  1SIW A;  1G8K A;  1EU1 A;  1OA9 A;  4L48 A;  3X2P A;  5CD1 A;  2JIO A;  3X2N A;  2JIP A;  2PNW A;  3X2M A;  2JIQ A;  2NVX A;  2PJJ A;  2NAP A;  5GLF A;  3X2K A;  1ZYR D;  3GTJ A;  4FG4 A;  2R93 A;  1UHD A;  1ZC1 A;  2WB1 A;  5FTJ A;  2KQA A;  2EEO B;  3TIW A;  5CCB A;  2MM0 A;  2Q19 X;  4JJO A;  4AZD A;  5CCX A;  3GTG A;  1BW3 A;  1E5V A;  3X2I A;  2A6H D;  5C1B A;  3SUM A;  2YU9 A;  5EQJ B;  5GLX A;  4KO8 A;  2VPW A;  3MB5 A;  3LHD A;  1IW7 D;  1N10 A;  3GTP A;  4ARC A;  2B25 A;  2A6E D;  3HU1 A;  4JS7 A;  4C2M A;  1I50 A;  3OUG A;  5GLY A;  1BW4 A;  3FPR A;  1YLE A;  3QQ8 A;  2XDP A;  3M3G A;  2BH0 A;  1R7R A;  2GF7 A;  1DMS A;  2VPY A;  1H0H A;  5FTN A;  3QWZ A;  5D6Y A;  1QDN A;  3X2L A;  1FDO A;  1PQF A;  4AS1 A;  3FKI A;  1CZ4 A;  2V3V A;  2PWY A;  2Y0S A;  2R7Z A;  3FPU A;  4FIB A;  4NOH A;  4KDL A;  1PYU B;  5FTM A;  4DMR A;  4AON B;  3CZB A;  2YVL A;  5D6X A;  4KOD A;  2WAQ A;  3ZJU A;  1UHE A;  2NYA A;  2Q18 X;  3DMR A;  2PMZ A;  1OA7 A;  3GTQ A;  1DMR A;  3ML1 A;  1I3Q A;  2VPZ A;  5FTK A;  4CRY G;  1PPY A;  3IR7 A;  3QQ7 A;  3QC8 A;  4KDI A;  1PQE A;  1TWC A;  1H5N A;  3ZJV A;  1Y1V A;  2A68 D;  1E60 A;  4ENG A;  1KQG A;  1CZ5 A;  1SMY D;  3SUK A;  2PIC A;  2R92 A;  1TWA A;  2PJH B;  3GTL A;  4JP7 A;  4AOK B;  4CRZ A;  2E2I A;  5GM9 A;  2JA7 A;  1O54 A;  2Q1D X;  2NVY A;  1KQF A;  5T5I D;  3IR6 A;  2VUM A;  2PI8 A;  2QQR A;  1TWH A;  2O5J D;  1E32 A;  1PQH A;  2G5D A;  1R27 A;  1I9G A;  5FTL A;  2BE5 D;  4AVR A;  1R9T A;  4AYB A;  4AAY A;  3CQZ A;  2MM2 A;  5ERG B;  4CS0 A;  3GTK A;  2IV2 X;  1TWG A;  1L8F A;  1S3S A;  1WCM A;  1YNN D;  3D30 A;  3HU3 A;  5D6W A;  2V45 A;  1PYQ A;  4FER A;  3CF2 A;  1G8J A;  1E18 A;  1PT1 A;  4GA5 A;  4KLN A;  3X2G A;  3GTO A;  2KY9 A;  2QQS A;  4CQN A;  3TM7 B;  1Y5I A;  5H4U A;  3IR5 A;  4ZM7 A;  4ARI A;  1WLF A;  2E7Z A;  1AA6 A;  1CR5 A;  1Y4Z A;  1E61 A;  5EPP A;  2JV2 A;  3BQB A;  3ENG A;  1TWF A;  4JP6 A;  2JIM A;  4FG2 A;  1K83 A;  3X2H A;  3X2O A;  3LGA A;  3SUL A;  2JA5 A;  3SUJ A;  1PT0 A; 
#chains in the Genus database with same CATH homology
 2KI8 A;  1OGY A;  2AE0 X;  2A69 D;  2B63 A;  2JIR A;  3ZJT A;  2VPX A;  1QCS A;  2JA6 A;  5C18 A;  5B6C A;  3PLX B;  4RV0 A;  4UC4 A;  3O5A A;  3H0G A;  2LW6 A;  4AQ7 A;  3FPT A;  3ZGZ A;  1AW8 B;  2CW0 D;  4GA6 A;  1TMO A;  2G6G A;  1Q16 A;  2DMR A;  4QIW A;  5DYG A;  5T5M D;  2YUJ A;  2GFA A;  2GAE A;  3GTM A;  1SFO A;  3HU2 A;  2E2H A;  1FDI A;  3HKZ A;  2C45 A;  5DYI A;  1YNJ D;  2Q1A X;  4D7Z B;  1VC3 B;  1Y1W A;  2Q1C X;  1SIW A;  1G8K A;  1EU1 A;  5CD1 A;  2JIO A;  2JIP A;  2PNW A;  2JIQ A;  2NVX A;  2PJJ A;  2NAP A;  5GLF A;  1ZYR D;  3GTJ A;  2R93 A;  1UHD A;  1ZC1 A;  2WB1 A;  5FTJ A;  3TIW A;  2EEO B;  5CCB A;  2MM0 A;  2Q19 X;  4AZD A;  5CCX A;  3GTG A;  1E5V A;  2A6H D;  5C1B A;  2YU9 A;  5EQJ B;  4KO8 A;  2VPW A;  3MB5 A;  3LHD A;  1IW7 D;  3GTP A;  4ARC A;  2B25 A;  2A6E D;  3HU1 A;  4C2M A;  1I50 A;  3OUG A;  3FPR A;  1YLE A;  3QQ8 A;  2XDP A;  1R7R A;  1DMS A;  2VPY A;  1H0H A;  5FTN A;  3QWZ A;  5D6Y A;  1QDN A;  1FDO A;  1PQF A;  4AS1 A;  3FKI A;  1CZ4 A;  2V3V A;  2PWY A;  2Y0S A;  2R7Z A;  3FPU A;  4FIB A;  4NOH A;  4KDL A;  1PYU B;  5FTM A;  4DMR A;  4AON B;  3CZB A;  2YVL A;  5D6X A;  4KOD A;  2WAQ A;  3ZJU A;  1UHE A;  2NYA A;  2Q18 X;  3DMR A;  2PMZ A;  3GTQ A;  1DMR A;  3ML1 A;  1I3Q A;  2VPZ A;  5FTK A;  4CRY G;  1PPY A;  3IR7 A;  3QQ7 A;  3QC8 A;  4KDI A;  1PQE A;  1TWC A;  1H5N A;  3ZJV A;  1Y1V A;  2A68 D;  1E60 A;  1KQG A;  1CZ5 A;  1SMY D;  2PIC A;  2R92 A;  1TWA A;  2PJH B;  3GTL A;  2E2I A;  4AOK B;  4CRZ A;  2JA7 A;  1O54 A;  2GF7 A;  2Q1D X;  2NVY A;  1KQF A;  5T5I D;  3IR6 A;  2VUM A;  2PI8 A;  2QQR A;  1TWH A;  2O5J D;  1E32 A;  1PQH A;  2G5D A;  1R27 A;  1I9G A;  5FTL A;  2BE5 D;  1R9T A;  4AYB A;  4AAY A;  3CQZ A;  2MM2 A;  5ERG B;  4CS0 A;  3GTK A;  2IV2 X;  1TWG A;  1S3S A;  1WCM A;  1YNN D;  3HU3 A;  5D6W A;  2V45 A;  1PYQ A;  3CF2 A;  1G8J A;  1E18 A;  1PT1 A;  4GA5 A;  4KLN A;  2KY9 A;  3GTO A;  2QQS A;  4CQN A;  3TM7 B;  1Y5I A;  3IR5 A;  4ARI A;  1WLF A;  2E7Z A;  1AA6 A;  1CR5 A;  1Y4Z A;  1E61 A;  5EPP A;  2JV2 A;  3BQB A;  1TWF A;  2JIM A;  1K83 A;  3LGA A;  2JA5 A;  1PT0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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