4KDLA

Crystal structure of p97/vcp n in complex with otu1 ubxl
Total Genus 53
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
53
sequence length
174
structure length
174
Chain Sequence
b'PNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEE'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Transitional endoplasmic reticulum ATPase
publication title Structural Basis for Ovarian Tumor Domain-containing Protein 1 (OTU1) Binding to p97/Valosin-containing Protein (VCP).
pubmed doi rcsb
source organism Homo sapiens
molecule tags Signaling protein/hydrolase
total genus 53
structure length 174
sequence length 174
ec nomenclature ec 3.6.4.6: Vesicle-fusing ATPase.
pdb deposition date 2013-04-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02359 CDC48_N Cell division protein 48 (CDC48), N-terminal domain
A PF02933 CDC48_2 Cell division protein 48 (CDC48), domain 2
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 4kdlA01
3.10.330.10 Alpha Beta Roll Vcp-like ATPase; Chain A, domain 2 Vcp-like ATPase; Chain A, domain 2 4kdlA02
5C18A 3GTOA 4KO8A 2R7ZA 3GTPA 1DMSA 4AOKB 4AONB 5EPPA 2JA5A 2NYAA 3IR6A 1KQGA 5FTNA 4CRYG 1TWFA 1SIWA 1TWAA 1KQFA 2V3VA 1E60A 2NAPA 3H0GA 1Y1WA 2YU9A 5FTLA 4AYBA 1TWCA 1WCMA 2NVXA 4D7ZB 4KODA 5C1BA 1PT0A 2WB1A 1Q16A 1TWHA 1G8JA 4DMRA 2B63A 5B6CA 2JIRA 1TMOA 1CZ5A 1YLEA 3HKZA 2WAQA 1SFOA 2VUMA 2C45A 3IR5A 2NVYA 3O5AA 3IR7A 1AW8B 1PYQA 2IV2X 1FDOA 2VPXA 3HU3A 2VPZA 3FKIA 2JV2A 1H0HA 5DYIA 1EU1A 1OGYA 4GA6A 1PT1A 5GLFA 2VPYA 1S3SA 3CF2A 1E61A 1E5VA 4KLNA 5FTMA 3QWZA 1K83A 5T5MD 2VPWA 1CZ4A 1E18A 3GTLA 2DMRA 3OUGA 3HU2A 1VC3B 5DYGA 1R7RA 1PQFA 2EEOB 3CQZA 4KDLA 3QQ7A 1Y4ZA 4CS0A 2YUJA 1CR5A 4QIWA 1I50A 3QQ8A 2JA7A 1FDIA 1UHEA 2R92A 1IW7D 3ML1A 3TIWA 2E7ZA 2R93A 3HU1A 4KDIA 1QDNA 2JIQA 1R27A 3TM7B 1QCSA 3GTMA 1G8KA 2E2IA 3QC8A 4AAYA 2Y0SA 2PMZA 1PPYA 1TWGA 4CRZA 3PLXB 2JA6A 3GTGA 5T5ID 4RV0A 5FTJA 2V45A 1PQHA 1ZC1A 1PQEA 2JIPA 2JIMA 1DMRA 2KI8A 4C2MA 1R9TA 1Y1VA 2JIOA 5FTKA 1E32A 1I3QA 2E2HA 1Y5IA 1UHDA 4AZDA 1H5NA 3GTQA 1PYUB 3GTKA 3DMRA 2PJHB 4GA5A 1AA6A 3GTJA 1WLFA
chains in the Genus database with same CATH superfamily
5C18A 1OA7A 3GTOA 4KO8A 1HD5A 2PWYA 1O54A 2R7ZA 3GTPA 1DMSA 4AOKB 4AONB 3ZJTA 2QQSA 2HCZX 5CCBA 3ZGZA 5EPPA 2JA5A 3LGAA 2NYAA 3IR6A 1KQGA 3BQBA 5FTNA 4CRYG 1TWFA 1SIWA 2A68D 3D30A 1TWAA 1KQFA 2V3VA 4NOHA 1E60A 2NAPA 4FFTA 5D6WA 3H0GA 2G6GA 2YU9A 1Y1WA 3SUJA 1I9GA 2KY9A 5FTLA 4AYBA 1TWCA 1WCMA 2NVXA 4JCWA 3CZBA 4D7ZB 3SUKA 4KODA 5C1BA 3X2HA 1PT0A 2WB1A 1WC2A 1Q16A 1TWHA 1SMYD 1G8JA 4DMRA 2B63A 1ZYRD 5B6CA 1TMOA 2JIRA 1CZ5A 1L8FA 1YLEA 3HKZA 4AS1A 2WAQA 1SFOA 2VUMA 2C45A 4JP7A 3IR5A 3X2NA 5D6YA 3X2GA 2NVYA 3O5AA 3IR7A 1AW8B 1PYQA 3FPUA 2IV2X 1FDOA 4ENGA 2VPXA 2PNWA 4ZM7A 2QQRA 4ARCA 4JS7A 3HU3A 2VPZA 3X2KA 3FKIA 5D6XA 2JV2A 1H0HA 5DYIA 1EU1A 1OGYA 4GA6A 1PT1A 5GLFA 4FERA 2VPYA 2KQAA 1S3SA 3CF2A 3MB5A 1E61A 1E5VA 2Q19X 4JP6A 4KLNA 5FTMA 3M3GA 5GLYA 3QWZA 1K83A 5T5MD 3X2LA 1YNND 1OA9A 4FG4A 3ZJUA 2VPWA 2A6ED 1E18A 3X2MA 3GTLA 2AE0X 2DMRA 3OUGA 2Q18X 3X2OA 3HU2A 1VC3B 5DYGA 5EQJB 1R7RA 1PQFA 2EEOB 5CCXA 3CQZA 2PJJA 4KDLA 2MM2A 3QQ7A 1Y4ZA 4CS0A 3X2IA 2YUJA 5CD1A 2PICA 2MM0A 5GM9A 1CR5A 4QIWA 2Q1CX 5GLXA 1I50A 3QQ8A 2JA7A 1FDIA 3ENGA 2O5JD 2GAEA 1UHEA 3SULA 2R92A 1IW7D 1BW4A 3ML1A 3TIWA 4UC4A 2E7ZA 2R93A 3SUMA 4AVRA 3LHDA 3HU1A 4L48A 4KDIA 3X2PA 3X2JA 1QDNA 2JIQA 1R27A 3FPRA 4AQ7A 3TM7B 1QCSA 3GTMA 2GFAA 2A69D 1G8KA 2E2IA 3QC8A 4AAYA 2Y0SA 2PMZA 1PPYA 1TWGA 4CRZA 3PLXB 2ENGA 5H4UA 2JA6A 3GTGA 2YVLA 5T5ID 3ZJVA 2CW0D 4RV0A 5FTJA 1BW3A 2GF7A 2V45A 1PQHA 1ZC1A 1N10A 4JJOA 1PQEA 1YNJD 2A6HD 2JIPA 2JIMA 4FIBA 1DMRA 2KI8A 4C2MA 1R9TA 2BE5D 1Y1VA 2JIOA 4FG2A 2B25A 5FTKA 1E32A 1I3QA 4ARIA 2LW6A 2Q1DX 2E2HA 1Y5IA 3FPTA 2PJHB 1UHDA 2XDPA 4AZDA 2Q1AX 1H5NA 5ERGB 3GTQA 1PYUB 2PI8A 4CQNA 2BH0A 2G5DA 3GTKA 3DMRA 1CZ4A 4GA5A 1AA6A 3GTJA 1WLFA
chains in the Genus database with same CATH topology
5C18A 3GTOA 4KO8A 2PWYA 1O54A 2R7ZA 3GTPA 1DMSA 4AOKB 4AONB 3ZJTA 2QQSA 5CCBA 3ZGZA 5EPPA 2JA5A 3LGAA 2NYAA 3IR6A 1KQGA 3BQBA 5FTNA 4CRYG 1TWFA 1SIWA 2A68D 1TWAA 1KQFA 2V3VA 4NOHA 1E60A 2NAPA 5D6WA 3H0GA 2G6GA 2YU9A 1Y1WA 2KY9A 1I9GA 5FTLA 4AYBA 1TWCA 1WCMA 2NVXA 3CZBA 4D7ZB 4KODA 5C1BA 1PT0A 2WB1A 1Q16A 1TWHA 1SMYD 1G8JA 4DMRA 2B63A 1ZYRD 5B6CA 2JIRA 1TMOA 1CZ5A 1YLEA 4AS1A 3HKZA 2WAQA 1SFOA 2VUMA 2C45A 5D6YA 3IR5A 2NVYA 3O5AA 3IR7A 1AW8B 1PYQA 3FPUA 2IV2X 1FDOA 2VPXA 2PNWA 2QQRA 4ARCA 3HU3A 2VPZA 5D6XA 3FKIA 2JV2A 1H0HA 5DYIA 1EU1A 1OGYA 4GA6A 1PT1A 5GLFA 2VPYA 1S3SA 3CF2A 3MB5A 1E61A 1E5VA 2Q19X 4KLNA 5FTMA 3QWZA 1K83A 5T5MD 1YNND 3ZJUA 2VPWA 2A6ED 1E18A 3GTLA 2AE0X 2DMRA 3OUGA 2Q18X 3HU2A 1VC3B 5DYGA 5EQJB 1R7RA 1PQFA 2EEOB 5CCXA 3CQZA 2PJJA 4KDLA 2MM2A 3QQ7A 1Y4ZA 4CS0A 2YUJA 5CD1A 2PICA 2MM0A 1CR5A 4QIWA 2Q1CX 1I50A 3QQ8A 2JA7A 1FDIA 2O5JD 2GAEA 1UHEA 2R92A 1IW7D 3ML1A 3TIWA 4UC4A 2E7ZA 2R93A 3LHDA 3HU1A 4KDIA 3FPRA 1QDNA 2JIQA 1R27A 4AQ7A 3TM7B 1QCSA 3GTMA 2GFAA 2A69D 1G8KA 2E2IA 3QC8A 4AAYA 2Y0SA 2PMZA 1PPYA 1TWGA 4CRZA 3PLXB 2JA6A 3GTGA 2YVLA 5T5ID 3ZJVA 2CW0D 4RV0A 5FTJA 2GF7A 2V45A 1PQHA 1ZC1A 1PQEA 1YNJD 2A6HD 2JIPA 2JIMA 4FIBA 1DMRA 2KI8A 4C2MA 1R9TA 2BE5D 1Y1VA 2JIOA 2B25A 5FTKA 1E32A 1I3QA 4ARIA 2LW6A 2Q1DX 2E2HA 1Y5IA 3FPTA 2PJHB 1UHDA 2XDPA 4AZDA 2Q1AX 1H5NA 5ERGB 3GTQA 1PYUB 2PI8A 4CQNA 2G5DA 3GTKA 3DMRA 1CZ4A 4GA5A 1AA6A 3GTJA 1WLFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5C18 A;  3GTO A;  4KO8 A;  2R7Z A;  3GTP A;  1DMS A;  4AOK B;  4AON B;  5EPP A;  2JA5 A;  2NYA A;  3IR6 A;  1KQG A;  5FTN A;  4CRY G;  1TWF A;  1SIW A;  1TWA A;  1KQF A;  2V3V A;  1E60 A;  2NAP A;  3H0G A;  1Y1W A;  2YU9 A;  5FTL A;  4AYB A;  1TWC A;  1WCM A;  2NVX A;  4D7Z B;  4KOD A;  5C1B A;  1PT0 A;  2WB1 A;  1Q16 A;  1TWH A;  1G8J A;  4DMR A;  2B63 A;  5B6C A;  2JIR A;  1TMO A;  1CZ5 A;  1YLE A;  3HKZ A;  2WAQ A;  1SFO A;  2VUM A;  2C45 A;  3IR5 A;  2NVY A;  3O5A A;  3IR7 A;  1AW8 B;  1PYQ A;  2IV2 X;  1FDO A;  2VPX A;  3HU3 A;  2VPZ A;  3FKI A;  2JV2 A;  1H0H A;  5DYI A;  1EU1 A;  1OGY A;  4GA6 A;  1PT1 A;  5GLF A;  2VPY A;  1S3S A;  3CF2 A;  1E61 A;  1E5V A;  4KLN A;  5FTM A;  3QWZ A;  1K83 A;  5T5M D;  2VPW A;  1CZ4 A;  1E18 A;  3GTL A;  2DMR A;  3OUG A;  3HU2 A;  1VC3 B;  5DYG A;  1R7R A;  1PQF A;  2EEO B;  3CQZ A;  4KDL A;  3QQ7 A;  1Y4Z A;  4CS0 A;  2YUJ A;  1CR5 A;  4QIW A;  1I50 A;  3QQ8 A;  2JA7 A;  1FDI A;  1UHE A;  2R92 A;  1IW7 D;  3ML1 A;  3TIW A;  2E7Z A;  2R93 A;  3HU1 A;  4KDI A;  1QDN A;  2JIQ A;  1R27 A;  3TM7 B;  1QCS A;  3GTM A;  1G8K A;  2E2I A;  3QC8 A;  4AAY A;  2Y0S A;  2PMZ A;  1PPY A;  1TWG A;  4CRZ A;  3PLX B;  2JA6 A;  3GTG A;  5T5I D;  4RV0 A;  5FTJ A;  2V45 A;  1PQH A;  1ZC1 A;  1PQE A;  2JIP A;  2JIM A;  1DMR A;  2KI8 A;  4C2M A;  1R9T A;  1Y1V A;  2JIO A;  5FTK A;  1E32 A;  1I3Q A;  2E2H A;  1Y5I A;  1UHD A;  4AZD A;  1H5N A;  3GTQ A;  1PYU B;  3GTK A;  3DMR A;  2PJH B;  4GA5 A;  1AA6 A;  3GTJ A;  1WLF A; 
#chains in the Genus database with same CATH topology
 5C18 A;  1OA7 A;  3GTO A;  4KO8 A;  1HD5 A;  2PWY A;  1O54 A;  2R7Z A;  3GTP A;  1DMS A;  4AOK B;  4AON B;  3ZJT A;  2QQS A;  2HCZ X;  5CCB A;  3ZGZ A;  5EPP A;  2JA5 A;  3LGA A;  2NYA A;  3IR6 A;  1KQG A;  3BQB A;  5FTN A;  4CRY G;  1TWF A;  1SIW A;  2A68 D;  3D30 A;  1TWA A;  1KQF A;  2V3V A;  4NOH A;  1E60 A;  2NAP A;  4FFT A;  5D6W A;  3H0G A;  2G6G A;  2YU9 A;  1Y1W A;  3SUJ A;  1I9G A;  2KY9 A;  5FTL A;  4AYB A;  1TWC A;  1WCM A;  2NVX A;  4JCW A;  3CZB A;  4D7Z B;  3SUK A;  4KOD A;  5C1B A;  3X2H A;  1PT0 A;  2WB1 A;  1WC2 A;  1Q16 A;  1TWH A;  1SMY D;  1G8J A;  4DMR A;  2B63 A;  1ZYR D;  5B6C A;  1TMO A;  2JIR A;  1CZ5 A;  1L8F A;  1YLE A;  3HKZ A;  4AS1 A;  2WAQ A;  1SFO A;  2VUM A;  2C45 A;  4JP7 A;  3IR5 A;  3X2N A;  5D6Y A;  3X2G A;  2NVY A;  3O5A A;  3IR7 A;  1AW8 B;  1PYQ A;  3FPU A;  2IV2 X;  1FDO A;  4ENG A;  2VPX A;  2PNW A;  4ZM7 A;  2QQR A;  4ARC A;  4JS7 A;  3HU3 A;  2VPZ A;  3X2K A;  3FKI A;  5D6X A;  2JV2 A;  1H0H A;  5DYI A;  1EU1 A;  1OGY A;  4GA6 A;  1PT1 A;  5GLF A;  4FER A;  2VPY A;  2KQA A;  1S3S A;  3CF2 A;  3MB5 A;  1E61 A;  1E5V A;  2Q19 X;  4JP6 A;  4KLN A;  5FTM A;  3M3G A;  5GLY A;  3QWZ A;  1K83 A;  5T5M D;  3X2L A;  1YNN D;  1OA9 A;  4FG4 A;  3ZJU A;  2VPW A;  2A6E D;  1E18 A;  3X2M A;  3GTL A;  2AE0 X;  2DMR A;  3OUG A;  2Q18 X;  3X2O A;  3HU2 A;  1VC3 B;  5DYG A;  5EQJ B;  1R7R A;  1PQF A;  2EEO B;  5CCX A;  3CQZ A;  2PJJ A;  4KDL A;  2MM2 A;  3QQ7 A;  1Y4Z A;  4CS0 A;  3X2I A;  2YUJ A;  5CD1 A;  2PIC A;  2MM0 A;  5GM9 A;  1CR5 A;  4QIW A;  2Q1C X;  5GLX A;  1I50 A;  3QQ8 A;  2JA7 A;  1FDI A;  3ENG A;  2O5J D;  2GAE A;  1UHE A;  3SUL A;  2R92 A;  1IW7 D;  1BW4 A;  3ML1 A;  3TIW A;  4UC4 A;  2E7Z A;  2R93 A;  3SUM A;  4AVR A;  3LHD A;  3HU1 A;  4L48 A;  4KDI A;  3X2P A;  3X2J A;  1QDN A;  2JIQ A;  1R27 A;  3FPR A;  4AQ7 A;  3TM7 B;  1QCS A;  3GTM A;  2GFA A;  2A69 D;  1G8K A;  2E2I A;  3QC8 A;  4AAY A;  2Y0S A;  2PMZ A;  1PPY A;  1TWG A;  4CRZ A;  3PLX B;  2ENG A;  5H4U A;  2JA6 A;  3GTG A;  2YVL A;  5T5I D;  3ZJV A;  2CW0 D;  4RV0 A;  5FTJ A;  1BW3 A;  2GF7 A;  2V45 A;  1PQH A;  1ZC1 A;  1N10 A;  4JJO A;  1PQE A;  1YNJ D;  2A6H D;  2JIP A;  2JIM A;  4FIB A;  1DMR A;  2KI8 A;  4C2M A;  1R9T A;  2BE5 D;  1Y1V A;  2JIO A;  4FG2 A;  2B25 A;  5FTK A;  1E32 A;  1I3Q A;  4ARI A;  2LW6 A;  2Q1D X;  2E2H A;  1Y5I A;  3FPT A;  2PJH B;  1UHD A;  2XDP A;  4AZD A;  2Q1A X;  1H5N A;  5ERG B;  3GTQ A;  1PYU B;  2PI8 A;  4CQN A;  2BH0 A;  2G5D A;  3GTK A;  3DMR A;  1CZ4 A;  4GA5 A;  1AA6 A;  3GTJ A;  1WLF A; 
#chains in the Genus database with same CATH homology
 5C18 A;  3GTO A;  4KO8 A;  2PWY A;  1O54 A;  2R7Z A;  3GTP A;  1DMS A;  4AOK B;  4AON B;  3ZJT A;  2QQS A;  5CCB A;  3ZGZ A;  5EPP A;  2JA5 A;  3LGA A;  2NYA A;  3IR6 A;  1KQG A;  3BQB A;  5FTN A;  4CRY G;  1TWF A;  1SIW A;  2A68 D;  1TWA A;  1KQF A;  2V3V A;  4NOH A;  1E60 A;  2NAP A;  5D6W A;  3H0G A;  2G6G A;  2YU9 A;  1Y1W A;  2KY9 A;  1I9G A;  5FTL A;  4AYB A;  1TWC A;  1WCM A;  2NVX A;  3CZB A;  4D7Z B;  4KOD A;  5C1B A;  1PT0 A;  2WB1 A;  1Q16 A;  1TWH A;  1SMY D;  1G8J A;  4DMR A;  2B63 A;  1ZYR D;  5B6C A;  2JIR A;  1TMO A;  1CZ5 A;  1YLE A;  4AS1 A;  3HKZ A;  2WAQ A;  1SFO A;  2VUM A;  2C45 A;  5D6Y A;  3IR5 A;  2NVY A;  3O5A A;  3IR7 A;  1AW8 B;  1PYQ A;  3FPU A;  2IV2 X;  1FDO A;  2VPX A;  2PNW A;  2QQR A;  4ARC A;  3HU3 A;  2VPZ A;  5D6X A;  3FKI A;  2JV2 A;  1H0H A;  5DYI A;  1EU1 A;  1OGY A;  4GA6 A;  1PT1 A;  5GLF A;  2VPY A;  1S3S A;  3CF2 A;  3MB5 A;  1E61 A;  1E5V A;  2Q19 X;  4KLN A;  5FTM A;  3QWZ A;  1K83 A;  5T5M D;  1YNN D;  3ZJU A;  2VPW A;  2A6E D;  1E18 A;  3GTL A;  2AE0 X;  2DMR A;  3OUG A;  2Q18 X;  3HU2 A;  1VC3 B;  5DYG A;  5EQJ B;  1R7R A;  1PQF A;  2EEO B;  5CCX A;  3CQZ A;  2PJJ A;  4KDL A;  2MM2 A;  3QQ7 A;  1Y4Z A;  4CS0 A;  2YUJ A;  5CD1 A;  2PIC A;  2MM0 A;  1CR5 A;  4QIW A;  2Q1C X;  1I50 A;  3QQ8 A;  2JA7 A;  1FDI A;  2O5J D;  2GAE A;  1UHE A;  2R92 A;  1IW7 D;  3ML1 A;  3TIW A;  4UC4 A;  2E7Z A;  2R93 A;  3LHD A;  3HU1 A;  4KDI A;  3FPR A;  1QDN A;  2JIQ A;  1R27 A;  4AQ7 A;  3TM7 B;  1QCS A;  3GTM A;  2GFA A;  2A69 D;  1G8K A;  2E2I A;  3QC8 A;  4AAY A;  2Y0S A;  2PMZ A;  1PPY A;  1TWG A;  4CRZ A;  3PLX B;  2JA6 A;  3GTG A;  2YVL A;  5T5I D;  3ZJV A;  2CW0 D;  4RV0 A;  5FTJ A;  2GF7 A;  2V45 A;  1PQH A;  1ZC1 A;  1PQE A;  1YNJ D;  2A6H D;  2JIP A;  2JIM A;  4FIB A;  1DMR A;  2KI8 A;  4C2M A;  1R9T A;  2BE5 D;  1Y1V A;  2JIO A;  2B25 A;  5FTK A;  1E32 A;  1I3Q A;  4ARI A;  2LW6 A;  2Q1D X;  2E2H A;  1Y5I A;  3FPT A;  2PJH B;  1UHD A;  2XDP A;  4AZD A;  2Q1A X;  1H5N A;  5ERG B;  3GTQ A;  1PYU B;  2PI8 A;  4CQN A;  2G5D A;  3GTK A;  3DMR A;  1CZ4 A;  4GA5 A;  1AA6 A;  3GTJ A;  1WLF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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