4KDLA

Crystal structure of p97/vcp n in complex with otu1 ubxl
Total Genus 53
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
53
sequence length
174
structure length
174
Chain Sequence
PNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords Transitional endoplasmic reticulum ATPase
publication title Structural Basis for Ovarian Tumor Domain-containing Protein 1 (OTU1) Binding to p97/Valosin-containing Protein (VCP).
pubmed doi rcsb
source organism Homo sapiens
molecule tags Signaling protein/hydrolase
total genus 53
structure length 174
sequence length 174
ec nomenclature ec 3.6.4.6: Vesicle-fusing ATPase.
pdb deposition date 2013-04-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02359 CDC48_N Cell division protein 48 (CDC48), N-terminal domain
A PF02933 CDC48_2 Cell division protein 48 (CDC48), domain 2
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 4kdlA01
3.10.330.10 Alpha Beta Roll Vcp-like ATPase; Chain A, domain 2 Vcp-like ATPase; Chain A, domain 2 4kdlA02
1TWGA 1H0HA 1QCSA 2NVXA 1I3QA 1QDNA 3FKIA 2E7ZA 4DMRA 1Y5IA 2V45A 5FTJA 1PT1A 2JIMA 5DYGA 2IV2X 2YU9A 1E32A 2Y0SA 4CRYG 1TMOA 1PQEA 1E5VA 1ZC1A 1R9TA 4C2MA 3QQ8A 1H5NA 4AAYA 2E2IA 1Y1VA 2YUJA 1IW7D 2JIQA 1FDOA 3ML1A 3GTLA 1Y1WA 2VUMA 1AA6A 1KQGA 1E60A 3GTGA 1FDIA 1Q16A 1I50A 2JV2A 4AOKB 2VPWA 2NAPA 4AONB 1EU1A 2PJHB 1TWFA 2R92A 1CR5A 2JIOA 5FTLA 3GTMA 1KQFA 1CZ4A 1OGYA 5FTNA 1R27A 4KDLA 5C1BA 1WLFA 3O5AA 1PYQA 2JA6A 3GTJA 3DMRA 1PPYA 1PQHA 3OUGA 1K83A 3GTQA 2R93A 2B63A 3QC8A 2JA5A 4CS0A 1PQFA 2V3VA 3IR7A 3QQ7A 1E18A 2C45A 4KO8A 1UHDA 1G8KA 2NVYA 2VPZA 3TIWA 4RV0A 1TWHA 5C18A 3TM7B 4CRZA 1VC3B 1AW8B 1SIWA 4KODA 1Y4ZA 2PMZA 1YLEA 3HU1A 5FTKA 2KI8A 3H0GA 2JIPA 4KLNA 2WB1A 3IR5A 1TWAA 1S3SA 2NYAA 3PLXB 4QIWA 4AYBA 5T5ID 5B6CA 3GTPA 3IR6A 4D7ZB 5T5MD 1TWCA 1PT0A 4AZDA 2E2HA 3CQZA 3GTOA 2JIRA 3CF2A 5EPPA 3GTKA 3HU2A 2DMRA 4GA5A 2JA7A 1E61A 1DMSA 1R7RA 4GA6A 1UHEA 5GLFA 5FTMA 2R7ZA 4KDIA 2VPYA 3HU3A 1SFOA 5DYIA 1PYUB 3HKZA 2EEOB 1DMRA 3QWZA 2VPXA 1CZ5A 1WCMA 1G8JA 2WAQA
chains in the Genus database with same CATH superfamily
4FIBA 1TWGA 1H0HA 1QCSA 2NVXA 3FPUA 1I3QA 1QDNA 3ZJUA 3FKIA 5GLXA 2Q1AX 2E7ZA 4DMRA 5CCXA 1Y5IA 2PICA 2V45A 5FTJA 1PT1A 2JIMA 5DYGA 4AS1A 2IV2X 2YU9A 4FERA 2G5DA 1E32A 2BH0A 2Y0SA 4CRYG 3SUMA 5D6XA 1YNJD 1TMOA 5CD1A 1PQEA 1WC2A 1OA9A 4AQ7A 3ZGZA 5D6WA 2O5JD 1E5VA 1ZC1A 1SMYD 1R9TA 2G6GA 3X2KA 4ENGA 3QQ8A 4C2MA 1H5NA 4AAYA 2E2IA 2Q19X 2LW6A 4UC4A 1Y1VA 2YUJA 1IW7D 2JIQA 1FDOA 3ML1A 3X2GA 1HD5A 4FFTA 3GTLA 3X2OA 1Y1WA 2Q18X 4ARIA 2VUMA 1AA6A 1KQGA 1OA7A 3LHDA 2CW0D 1E60A 3GTGA 1FDIA 1Q16A 3CZBA 1I50A 3ZJTA 2JV2A 4AOKB 2VPWA 2NAPA 4AONB 1EU1A 2PJHB 1TWFA 2R92A 1CR5A 1ZYRD 2JIOA 5FTLA 3GTMA 2Q1DX 3SUJA 1KQFA 1L8FA 2A69D 1CZ4A 1OGYA 1BW4A 5FTNA 1R27A 4KDLA 5C1BA 5CCBA 1WLFA 3O5AA 3BQBA 2Q1CX 1PYQA 2GAEA 2PNWA 2JA6A 4JP7A 3ZJVA 4JJOA 3GTJA 3DMRA 1PPYA 5EQJB 2HCZX 1PQHA 3OUGA 1K83A 3GTQA 2R93A 2XDPA 2BE5D 3FPRA 3SULA 2B63A 2PWYA 3X2PA 3QC8A 2JA5A 4CS0A 1PQFA 2V3VA 3IR7A 3QQ7A 5GLYA 1E18A 2C45A 4KO8A 1UHDA 1G8KA 3FPTA 2NVYA 3X2IA 4L48A 2VPZA 3TIWA 4RV0A 1TWHA 5C18A 2QQSA 3D30A 5GM9A 4ZM7A 3TM7B 4CRZA 5D6YA 1VC3B 1AW8B 1O54A 1SIWA 4KODA 1Y4ZA 2MM2A 2PMZA 1YLEA 2QQRA 3X2LA 3HU1A 1N10A 2AE0X 2B25A 3LGAA 4JCWA 4AVRA 1YNND 3ENGA 5ERGB 5FTKA 2KI8A 3H0GA 2JIPA 4KLNA 2WB1A 2GF7A 1BW3A 3IR5A 1TWAA 4CQNA 1S3SA 2NYAA 3PLXB 4FG2A 4QIWA 2PJJA 4AYBA 3M3GA 2YVLA 5T5ID 3SUKA 5B6CA 3GTPA 3IR6A 4D7ZB 4JS7A 5T5MD 1TWCA 1PT0A 4AZDA 2E2HA 2MM0A 3CQZA 3GTOA 2KQAA 2GFAA 2KY9A 2JIRA 2A68D 2A6HD 3X2JA 3CF2A 5EPPA 3GTKA 3HU2A 2A6ED 2DMRA 4GA5A 1E61A 1DMSA 2JA7A 4ARCA 1R7RA 4GA6A 4FG4A 5H4UA 1UHEA 3MB5A 5GLFA 5FTMA 2R7ZA 4KDIA 3X2NA 2PI8A 3X2HA 2VPYA 3HU3A 4NOHA 4JP6A 1SFOA 5DYIA 1PYUB 3HKZA 2EEOB 1DMRA 3QWZA 2VPXA 1CZ5A 1WCMA 1G8JA 2WAQA 3X2MA 2ENGA 1I9GA
chains in the Genus database with same CATH topology
4FIBA 1TWGA 1H0HA 1QCSA 2NVXA 3FPUA 1I3QA 1QDNA 3ZJUA 3FKIA 2Q1AX 2E7ZA 4DMRA 5CCXA 1Y5IA 2PICA 2V45A 5FTJA 1PT1A 2JIMA 5DYGA 4AS1A 2IV2X 2YU9A 2G5DA 1E32A 2Y0SA 4CRYG 5D6XA 1YNJD 1TMOA 5CD1A 1PQEA 4AQ7A 3ZGZA 5D6WA 2O5JD 1E5VA 1ZC1A 1SMYD 1R9TA 2G6GA 4C2MA 3QQ8A 1H5NA 4AAYA 2E2IA 2Q19X 2LW6A 4UC4A 1Y1VA 2YUJA 1IW7D 2JIQA 1FDOA 3ML1A 3GTLA 1Y1WA 2Q18X 4ARIA 2VUMA 1AA6A 1KQGA 3LHDA 2CW0D 1E60A 3GTGA 1FDIA 1Q16A 3CZBA 1I50A 3ZJTA 2JV2A 4AOKB 2VPWA 2NAPA 4AONB 1EU1A 2PJHB 1TWFA 2R92A 1CR5A 1ZYRD 2JIOA 5FTLA 3GTMA 2Q1DX 1KQFA 2A69D 1CZ4A 1OGYA 5FTNA 1R27A 4KDLA 5C1BA 5CCBA 1WLFA 3O5AA 3BQBA 2Q1CX 1PYQA 2GAEA 2PNWA 2JA6A 3ZJVA 3GTJA 3DMRA 1PPYA 5EQJB 1PQHA 3OUGA 1K83A 3GTQA 2XDPA 2R93A 3FPRA 2BE5D 2B63A 2PWYA 3QC8A 2JA5A 4CS0A 1PQFA 2V3VA 3IR7A 3QQ7A 1E18A 2C45A 4KO8A 1UHDA 1G8KA 3FPTA 2NVYA 2VPZA 3TIWA 4RV0A 1TWHA 5C18A 2QQSA 3TM7B 4CRZA 5D6YA 1VC3B 1AW8B 1O54A 1SIWA 4KODA 1Y4ZA 2MM2A 2PMZA 1YLEA 2QQRA 3HU1A 2AE0X 2B25A 3LGAA 1YNND 5ERGB 5FTKA 2KI8A 3H0GA 2JIPA 4KLNA 2WB1A 2GF7A 3IR5A 1TWAA 4CQNA 1S3SA 2NYAA 3PLXB 4QIWA 4AYBA 2PJJA 2YVLA 5T5ID 5B6CA 3GTPA 3IR6A 4D7ZB 5T5MD 1TWCA 1PT0A 4AZDA 2E2HA 2MM0A 3CQZA 3GTOA 2GFAA 2KY9A 2JIRA 2A68D 2A6HD 3CF2A 5EPPA 3GTKA 3HU2A 2A6ED 2DMRA 4GA5A 1E61A 1DMSA 2JA7A 4ARCA 1R7RA 4GA6A 3MB5A 1UHEA 5GLFA 5FTMA 2R7ZA 4KDIA 2PI8A 2VPYA 3HU3A 4NOHA 1SFOA 5DYIA 1PYUB 3HKZA 2EEOB 1DMRA 3QWZA 2VPXA 1CZ5A 1WCMA 1G8JA 2WAQA 1I9GA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TWG A;  1H0H A;  1QCS A;  2NVX A;  1I3Q A;  1QDN A;  3FKI A;  2E7Z A;  4DMR A;  1Y5I A;  2V45 A;  5FTJ A;  1PT1 A;  2JIM A;  5DYG A;  2IV2 X;  2YU9 A;  1E32 A;  2Y0S A;  4CRY G;  1TMO A;  1PQE A;  1E5V A;  1ZC1 A;  1R9T A;  4C2M A;  3QQ8 A;  1H5N A;  4AAY A;  2E2I A;  1Y1V A;  2YUJ A;  1IW7 D;  2JIQ A;  1FDO A;  3ML1 A;  3GTL A;  1Y1W A;  2VUM A;  1AA6 A;  1KQG A;  1E60 A;  3GTG A;  1FDI A;  1Q16 A;  1I50 A;  2JV2 A;  4AOK B;  2VPW A;  2NAP A;  4AON B;  1EU1 A;  2PJH B;  1TWF A;  2R92 A;  1CR5 A;  2JIO A;  5FTL A;  3GTM A;  1KQF A;  1CZ4 A;  1OGY A;  5FTN A;  1R27 A;  4KDL A;  5C1B A;  1WLF A;  3O5A A;  1PYQ A;  2JA6 A;  3GTJ A;  3DMR A;  1PPY A;  1PQH A;  3OUG A;  1K83 A;  3GTQ A;  2R93 A;  2B63 A;  3QC8 A;  2JA5 A;  4CS0 A;  1PQF A;  2V3V A;  3IR7 A;  3QQ7 A;  1E18 A;  2C45 A;  4KO8 A;  1UHD A;  1G8K A;  2NVY A;  2VPZ A;  3TIW A;  4RV0 A;  1TWH A;  5C18 A;  3TM7 B;  4CRZ A;  1VC3 B;  1AW8 B;  1SIW A;  4KOD A;  1Y4Z A;  2PMZ A;  1YLE A;  3HU1 A;  5FTK A;  2KI8 A;  3H0G A;  2JIP A;  4KLN A;  2WB1 A;  3IR5 A;  1TWA A;  1S3S A;  2NYA A;  3PLX B;  4QIW A;  4AYB A;  5T5I D;  5B6C A;  3GTP A;  3IR6 A;  4D7Z B;  5T5M D;  1TWC A;  1PT0 A;  4AZD A;  2E2H A;  3CQZ A;  3GTO A;  2JIR A;  3CF2 A;  5EPP A;  3GTK A;  3HU2 A;  2DMR A;  4GA5 A;  2JA7 A;  1E61 A;  1DMS A;  1R7R A;  4GA6 A;  1UHE A;  5GLF A;  5FTM A;  2R7Z A;  4KDI A;  2VPY A;  3HU3 A;  1SFO A;  5DYI A;  1PYU B;  3HKZ A;  2EEO B;  1DMR A;  3QWZ A;  2VPX A;  1CZ5 A;  1WCM A;  1G8J A;  2WAQ A; 
#chains in the Genus database with same CATH topology
 4FIB A;  1TWG A;  1H0H A;  1QCS A;  2NVX A;  3FPU A;  1I3Q A;  1QDN A;  3ZJU A;  3FKI A;  5GLX A;  2Q1A X;  2E7Z A;  4DMR A;  5CCX A;  1Y5I A;  2PIC A;  2V45 A;  5FTJ A;  1PT1 A;  2JIM A;  5DYG A;  4AS1 A;  2IV2 X;  2YU9 A;  4FER A;  2G5D A;  1E32 A;  2BH0 A;  2Y0S A;  4CRY G;  3SUM A;  5D6X A;  1YNJ D;  1TMO A;  5CD1 A;  1PQE A;  1WC2 A;  1OA9 A;  4AQ7 A;  3ZGZ A;  5D6W A;  2O5J D;  1E5V A;  1ZC1 A;  1SMY D;  1R9T A;  2G6G A;  3X2K A;  4ENG A;  3QQ8 A;  4C2M A;  1H5N A;  4AAY A;  2E2I A;  2Q19 X;  2LW6 A;  4UC4 A;  1Y1V A;  2YUJ A;  1IW7 D;  2JIQ A;  1FDO A;  3ML1 A;  3X2G A;  1HD5 A;  4FFT A;  3GTL A;  3X2O A;  1Y1W A;  2Q18 X;  4ARI A;  2VUM A;  1AA6 A;  1KQG A;  1OA7 A;  3LHD A;  2CW0 D;  1E60 A;  3GTG A;  1FDI A;  1Q16 A;  3CZB A;  1I50 A;  3ZJT A;  2JV2 A;  4AOK B;  2VPW A;  2NAP A;  4AON B;  1EU1 A;  2PJH B;  1TWF A;  2R92 A;  1CR5 A;  1ZYR D;  2JIO A;  5FTL A;  3GTM A;  2Q1D X;  3SUJ A;  1KQF A;  1L8F A;  2A69 D;  1CZ4 A;  1OGY A;  1BW4 A;  5FTN A;  1R27 A;  4KDL A;  5C1B A;  5CCB A;  1WLF A;  3O5A A;  3BQB A;  2Q1C X;  1PYQ A;  2GAE A;  2PNW A;  2JA6 A;  4JP7 A;  3ZJV A;  4JJO A;  3GTJ A;  3DMR A;  1PPY A;  5EQJ B;  2HCZ X;  1PQH A;  3OUG A;  1K83 A;  3GTQ A;  2R93 A;  2XDP A;  2BE5 D;  3FPR A;  3SUL A;  2B63 A;  2PWY A;  3X2P A;  3QC8 A;  2JA5 A;  4CS0 A;  1PQF A;  2V3V A;  3IR7 A;  3QQ7 A;  5GLY A;  1E18 A;  2C45 A;  4KO8 A;  1UHD A;  1G8K A;  3FPT A;  2NVY A;  3X2I A;  4L48 A;  2VPZ A;  3TIW A;  4RV0 A;  1TWH A;  5C18 A;  2QQS A;  3D30 A;  5GM9 A;  4ZM7 A;  3TM7 B;  4CRZ A;  5D6Y A;  1VC3 B;  1AW8 B;  1O54 A;  1SIW A;  4KOD A;  1Y4Z A;  2MM2 A;  2PMZ A;  1YLE A;  2QQR A;  3X2L A;  3HU1 A;  1N10 A;  2AE0 X;  2B25 A;  3LGA A;  4JCW A;  4AVR A;  1YNN D;  3ENG A;  5ERG B;  5FTK A;  2KI8 A;  3H0G A;  2JIP A;  4KLN A;  2WB1 A;  2GF7 A;  1BW3 A;  3IR5 A;  1TWA A;  4CQN A;  1S3S A;  2NYA A;  3PLX B;  4FG2 A;  4QIW A;  2PJJ A;  4AYB A;  3M3G A;  2YVL A;  5T5I D;  3SUK A;  5B6C A;  3GTP A;  3IR6 A;  4D7Z B;  4JS7 A;  5T5M D;  1TWC A;  1PT0 A;  4AZD A;  2E2H A;  2MM0 A;  3CQZ A;  3GTO A;  2KQA A;  2GFA A;  2KY9 A;  2JIR A;  2A68 D;  2A6H D;  3X2J A;  3CF2 A;  5EPP A;  3GTK A;  3HU2 A;  2A6E D;  2DMR A;  4GA5 A;  1E61 A;  1DMS A;  2JA7 A;  4ARC A;  1R7R A;  4GA6 A;  4FG4 A;  5H4U A;  1UHE A;  3MB5 A;  5GLF A;  5FTM A;  2R7Z A;  4KDI A;  3X2N A;  2PI8 A;  3X2H A;  2VPY A;  3HU3 A;  4NOH A;  4JP6 A;  1SFO A;  5DYI A;  1PYU B;  3HKZ A;  2EEO B;  1DMR A;  3QWZ A;  2VPX A;  1CZ5 A;  1WCM A;  1G8J A;  2WAQ A;  3X2M A;  2ENG A;  1I9G A; 
#chains in the Genus database with same CATH homology
 4FIB A;  1TWG A;  1H0H A;  1QCS A;  2NVX A;  3FPU A;  1I3Q A;  1QDN A;  3ZJU A;  3FKI A;  2Q1A X;  2E7Z A;  4DMR A;  5CCX A;  1Y5I A;  2PIC A;  2V45 A;  5FTJ A;  1PT1 A;  2JIM A;  5DYG A;  4AS1 A;  2IV2 X;  2YU9 A;  2G5D A;  1E32 A;  2Y0S A;  4CRY G;  5D6X A;  1YNJ D;  1TMO A;  5CD1 A;  1PQE A;  4AQ7 A;  3ZGZ A;  5D6W A;  2O5J D;  1E5V A;  1ZC1 A;  1SMY D;  1R9T A;  2G6G A;  4C2M A;  3QQ8 A;  1H5N A;  4AAY A;  2E2I A;  2Q19 X;  2LW6 A;  4UC4 A;  1Y1V A;  2YUJ A;  1IW7 D;  2JIQ A;  1FDO A;  3ML1 A;  3GTL A;  1Y1W A;  2Q18 X;  4ARI A;  2VUM A;  1AA6 A;  1KQG A;  3LHD A;  2CW0 D;  1E60 A;  3GTG A;  1FDI A;  1Q16 A;  3CZB A;  1I50 A;  3ZJT A;  2JV2 A;  4AOK B;  2VPW A;  2NAP A;  4AON B;  1EU1 A;  2PJH B;  1TWF A;  2R92 A;  1CR5 A;  1ZYR D;  2JIO A;  5FTL A;  3GTM A;  2Q1D X;  1KQF A;  2A69 D;  1CZ4 A;  1OGY A;  5FTN A;  1R27 A;  4KDL A;  5C1B A;  5CCB A;  1WLF A;  3O5A A;  3BQB A;  2Q1C X;  1PYQ A;  2GAE A;  2PNW A;  2JA6 A;  3ZJV A;  3GTJ A;  3DMR A;  1PPY A;  5EQJ B;  1PQH A;  3OUG A;  1K83 A;  3GTQ A;  2XDP A;  2R93 A;  3FPR A;  2BE5 D;  2B63 A;  2PWY A;  3QC8 A;  2JA5 A;  4CS0 A;  1PQF A;  2V3V A;  3IR7 A;  3QQ7 A;  1E18 A;  2C45 A;  4KO8 A;  1UHD A;  1G8K A;  3FPT A;  2NVY A;  2VPZ A;  3TIW A;  4RV0 A;  1TWH A;  5C18 A;  2QQS A;  3TM7 B;  4CRZ A;  5D6Y A;  1VC3 B;  1AW8 B;  1O54 A;  1SIW A;  4KOD A;  1Y4Z A;  2MM2 A;  2PMZ A;  1YLE A;  2QQR A;  3HU1 A;  2AE0 X;  2B25 A;  3LGA A;  1YNN D;  5ERG B;  5FTK A;  2KI8 A;  3H0G A;  2JIP A;  4KLN A;  2WB1 A;  2GF7 A;  3IR5 A;  1TWA A;  4CQN A;  1S3S A;  2NYA A;  3PLX B;  4QIW A;  4AYB A;  2PJJ A;  2YVL A;  5T5I D;  5B6C A;  3GTP A;  3IR6 A;  4D7Z B;  5T5M D;  1TWC A;  1PT0 A;  4AZD A;  2E2H A;  2MM0 A;  3CQZ A;  3GTO A;  2GFA A;  2KY9 A;  2JIR A;  2A68 D;  2A6H D;  3CF2 A;  5EPP A;  3GTK A;  3HU2 A;  2A6E D;  2DMR A;  4GA5 A;  1E61 A;  1DMS A;  2JA7 A;  4ARC A;  1R7R A;  4GA6 A;  3MB5 A;  1UHE A;  5GLF A;  5FTM A;  2R7Z A;  4KDI A;  2PI8 A;  2VPY A;  3HU3 A;  4NOH A;  1SFO A;  5DYI A;  1PYU B;  3HKZ A;  2EEO B;  1DMR A;  3QWZ A;  2VPX A;  1CZ5 A;  1WCM A;  1G8J A;  2WAQ A;  1I9G A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...