4KEEA

Crystal structure of cofilin mutant (cof1-158p)
Total Genus 34
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
139
structure length
132
Chain Sequence
GSRSGVAVADESLTAFNDLKLGKKYKFILFGLNDAKTEIVVKETSTDPSYDAFLEKLPENDCLYAIYDFEYEESKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSTDVQGTDFSEVSYDSVLERVSRG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Actin binding protein
molecule keywords Cofilin
publication title Crystal Structure of Cofilin Mutant (cof1-158p)
rcsb
source organism Saccharomyces cerevisiae
total genus 34
structure length 132
sequence length 139
ec nomenclature
pdb deposition date 2013-04-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00241 Cofilin_ADF Cofilin/tropomyosin-type actin-binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 4keeA00
1PD0A 4KEFA 1WNJA 2NUTB 1VKKA 1P8XA 5A1MA 5HVKB 2I2QA 1TVJA 4BEX1 1EQYS 4LIZA 3CJCG 5KYYB 2FF6G 2HD7A 5IVUA 2NUPA 1SVRA 1HQZ1 3FFNA 4CBWG 1CNUA 3A5OS 5KYXB 1Q8GA 1DEJS 1H1VG 5L6WC 5FAEA 1AK7A 1C0GS 1M2OA 1M4JA 1NLVG 1T3YA 1COFA 1YVNG 5KYWB 4KEEA 1TMWA 1SVYA 2FH1A 1T3XA 1V6FA 5KYNA 1T2LA 3A5LS 1M2VA 5FAFA 3EGXB 3FG7A 1J72A 2FH2A 1NPHA 1D0NA 3A5MS 2XF1A 1X67A 1MDUA 4PKHB 1AHQA 2L72A 2VIKA 3EFOA 1VFQA 3A5NS 2KVKA 1T44G 3EGDA 1SVQA 2NUPB 2FGHA 3DAWB 1D4XG 3EG9A 5DD2A 1JHWA 5KYUA 4CBXG 1QPVA 2XFAA 4KEDA 2QTVA 2LLFA 2VILA 1NM1G 2FH3A 3TU5B 1CFYA 3Q2BA 2VACA 2NUTA 3CI5G 2MOTA 3CJBG 1NMDG 1C0FS 1Q8XA 3CIPG 3FFKA 3L50A 5KYYA 1F7SA 1M2VB 2D8BA 1YAGG 1P8ZG 5KYXA 4JD2H 2MV2A 3EFOB 1PCXA 2W0IA 3EH2A 2MP4A 1WFSA 4Z94G 2LXXA 3EGDB 5HVKD 4CBUG 1PD1A 1ESVS 2FH4A 4PKIG 5KYWA 1UDMA 3EG9B 4PKGG 3FG6A 3EH1A 1KCQA 5KYUB 2FF3A 1RGIG 2LJ8A 1AK6A 1WM4A 3EGXA 4S10C
chains in the Genus database with same CATH superfamily
1PD0A 4KEFA 1WNJA 2NUTB 1VKKA 1P8XA 5A1MA 5HVKB 2I2QA 1TVJA 4BEX1 1EQYS 4LIZA 3CJCG 5KYYB 2FF6G 2HD7A 5IVUA 2NUPA 1SVRA 1HQZ1 3FFNA 4CBWG 1CNUA 3A5OS 5KYXB 1Q8GA 1DEJS 1H1VG 5L6WC 5FAEA 3DA7A 1AK7A 1C0GS 1M2OA 1M4JA 1NLVG 1T3YA 1COFA 1YVNG 5KYWB 4KEEA 1TMWA 1SVYA 2FH1A 1T3XA 1V6FA 5KYNA 1T2LA 3A5LS 1M2VA 5FAFA 3EGXB 3FG7A 1J72A 2FH2A 1NPHA 1D0NA 3A5MS 2XF1A 1X67A 1MDUA 4PKHB 1AHQA 2L72A 2VIKA 3EFOA 1VFQA 3A5NS 2KVKA 1T44G 3EGDA 1SVQA 2NUPB 2FGHA 3DAWB 1D4XG 3EG9A 5DD2A 1JHWA 5KYUA 4CBXG 1QPVA 2XFAA 4KEDA 2QTVA 2LLFA 2VILA 1NM1G 2FH3A 3TU5B 1CFYA 3Q2BA 2VACA 2NUTA 3CI5G 2MOTA 3CJBG 1NMDG 1C0FS 1Q8XA 3CIPG 3FFKA 3L50A 5KYYA 1F7SA 1M2VB 2D8BA 1YAGG 1P8ZG 5KYXA 4JD2H 2MV2A 3EFOB 1PCXA 2W0IA 3EH2A 2MP4A 1WFSA 4Z94G 2LXXA 3EGDB 5HVKD 4CBUG 1PD1A 1ESVS 2FH4A 4PKIG 5KYWA 1UDMA 3EG9B 4PKGG 3FG6A 3EH1A 1KCQA 5KYUB 2FF3A 1RGIG 2LJ8A 1AK6A 1WM4A 3EGXA 4S10C
chains in the Genus database with same CATH topology
1PD0A 4KEFA 1WNJA 2NUTB 1VKKA 1P8XA 5A1MA 5HVKB 2I2QA 1TVJA 4BEX1 1EQYS 4LIZA 3CJCG 5KYYB 2FF6G 2HD7A 5IVUA 2NUPA 1SVRA 1HQZ1 3FFNA 4CBWG 1CNUA 3A5OS 5KYXB 1Q8GA 1DEJS 1H1VG 5L6WC 5FAEA 3DA7A 1AK7A 1C0GS 1M2OA 1M4JA 1NLVG 1T3YA 1COFA 1YVNG 5KYWB 4KEEA 1TMWA 1SVYA 2FH1A 1T3XA 1V6FA 5KYNA 1T2LA 3A5LS 1M2VA 5FAFA 3EGXB 3FG7A 1J72A 2FH2A 1NPHA 1D0NA 3A5MS 2XF1A 1X67A 1MDUA 4PKHB 1AHQA 2L72A 2VIKA 3EFOA 1VFQA 3A5NS 2KVKA 1T44G 3EGDA 1SVQA 2NUPB 2FGHA 3DAWB 1D4XG 3EG9A 5DD2A 1JHWA 5KYUA 4CBXG 1QPVA 2XFAA 4KEDA 2QTVA 2LLFA 2VILA 1NM1G 2FH3A 3TU5B 1CFYA 3Q2BA 2VACA 2NUTA 3CI5G 2MOTA 3CJBG 1NMDG 1C0FS 1Q8XA 3CIPG 3FFKA 3L50A 5KYYA 1F7SA 1M2VB 2D8BA 1YAGG 1P8ZG 5KYXA 4JD2H 2MV2A 3EFOB 1PCXA 2W0IA 3EH2A 2MP4A 1WFSA 4Z94G 2LXXA 3EGDB 5HVKD 4CBUG 1PD1A 1ESVS 2FH4A 4PKIG 5KYWA 1UDMA 3EG9B 4PKGG 3FG6A 3EH1A 1KCQA 5KYUB 2FF3A 1RGIG 2LJ8A 1AK6A 1WM4A 3EGXA 4S10C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PD0 A;  4KEF A;  1WNJ A;  2NUT B;  1VKK A;  1P8X A;  5A1M A;  5HVK B;  2I2Q A;  1TVJ A;  4BEX 1;  1EQY S;  4LIZ A;  3CJC G;  5KYY B;  2FF6 G;  2HD7 A;  5IVU A;  2NUP A;  1SVR A;  1HQZ 1;  3FFN A;  4CBW G;  1CNU A;  3A5O S;  5KYX B;  1Q8G A;  1DEJ S;  1H1V G;  5L6W C;  5FAE A;  1AK7 A;  1C0G S;  1M2O A;  1M4J A;  1NLV G;  1T3Y A;  1COF A;  1YVN G;  5KYW B;  4KEE A;  1TMW A;  1SVY A;  2FH1 A;  1T3X A;  1V6F A;  5KYN A;  1T2L A;  3A5L S;  1M2V A;  5FAF A;  3EGX B;  3FG7 A;  1J72 A;  2FH2 A;  1NPH A;  1D0N A;  3A5M S;  2XF1 A;  1X67 A;  1MDU A;  4PKH B;  1AHQ A;  2L72 A;  2VIK A;  3EFO A;  1VFQ A;  3A5N S;  2KVK A;  1T44 G;  3EGD A;  1SVQ A;  2NUP B;  2FGH A;  3DAW B;  1D4X G;  3EG9 A;  5DD2 A;  1JHW A;  5KYU A;  4CBX G;  1QPV A;  2XFA A;  4KED A;  2QTV A;  2LLF A;  2VIL A;  1NM1 G;  2FH3 A;  3TU5 B;  1CFY A;  3Q2B A;  2VAC A;  2NUT A;  3CI5 G;  2MOT A;  3CJB G;  1NMD G;  1C0F S;  1Q8X A;  3CIP G;  3FFK A;  3L50 A;  5KYY A;  1F7S A;  1M2V B;  2D8B A;  1YAG G;  1P8Z G;  5KYX A;  4JD2 H;  2MV2 A;  3EFO B;  1PCX A;  2W0I A;  3EH2 A;  2MP4 A;  1WFS A;  4Z94 G;  2LXX A;  3EGD B;  5HVK D;  4CBU G;  1PD1 A;  1ESV S;  2FH4 A;  4PKI G;  5KYW A;  1UDM A;  3EG9 B;  4PKG G;  3FG6 A;  3EH1 A;  1KCQ A;  5KYU B;  2FF3 A;  1RGI G;  2LJ8 A;  1AK6 A;  1WM4 A;  3EGX A;  4S10 C; 
#chains in the Genus database with same CATH topology
 1PD0 A;  4KEF A;  1WNJ A;  2NUT B;  1VKK A;  1P8X A;  5A1M A;  5HVK B;  2I2Q A;  1TVJ A;  4BEX 1;  1EQY S;  4LIZ A;  3CJC G;  5KYY B;  2FF6 G;  2HD7 A;  5IVU A;  2NUP A;  1SVR A;  1HQZ 1;  3FFN A;  4CBW G;  1CNU A;  3A5O S;  5KYX B;  1Q8G A;  1DEJ S;  1H1V G;  5L6W C;  5FAE A;  3DA7 A;  1AK7 A;  1C0G S;  1M2O A;  1M4J A;  1NLV G;  1T3Y A;  1COF A;  1YVN G;  5KYW B;  4KEE A;  1TMW A;  1SVY A;  2FH1 A;  1T3X A;  1V6F A;  5KYN A;  1T2L A;  3A5L S;  1M2V A;  5FAF A;  3EGX B;  3FG7 A;  1J72 A;  2FH2 A;  1NPH A;  1D0N A;  3A5M S;  2XF1 A;  1X67 A;  1MDU A;  4PKH B;  1AHQ A;  2L72 A;  2VIK A;  3EFO A;  1VFQ A;  3A5N S;  2KVK A;  1T44 G;  3EGD A;  1SVQ A;  2NUP B;  2FGH A;  3DAW B;  1D4X G;  3EG9 A;  5DD2 A;  1JHW A;  5KYU A;  4CBX G;  1QPV A;  2XFA A;  4KED A;  2QTV A;  2LLF A;  2VIL A;  1NM1 G;  2FH3 A;  3TU5 B;  1CFY A;  3Q2B A;  2VAC A;  2NUT A;  3CI5 G;  2MOT A;  3CJB G;  1NMD G;  1C0F S;  1Q8X A;  3CIP G;  3FFK A;  3L50 A;  5KYY A;  1F7S A;  1M2V B;  2D8B A;  1YAG G;  1P8Z G;  5KYX A;  4JD2 H;  2MV2 A;  3EFO B;  1PCX A;  2W0I A;  3EH2 A;  2MP4 A;  1WFS A;  4Z94 G;  2LXX A;  3EGD B;  5HVK D;  4CBU G;  1PD1 A;  1ESV S;  2FH4 A;  4PKI G;  5KYW A;  1UDM A;  3EG9 B;  4PKG G;  3FG6 A;  3EH1 A;  1KCQ A;  5KYU B;  2FF3 A;  1RGI G;  2LJ8 A;  1AK6 A;  1WM4 A;  3EGX A;  4S10 C; 
#chains in the Genus database with same CATH homology
 1PD0 A;  4KEF A;  1WNJ A;  2NUT B;  1VKK A;  1P8X A;  5A1M A;  5HVK B;  2I2Q A;  1TVJ A;  4BEX 1;  1EQY S;  4LIZ A;  3CJC G;  5KYY B;  2FF6 G;  2HD7 A;  5IVU A;  2NUP A;  1SVR A;  1HQZ 1;  3FFN A;  4CBW G;  1CNU A;  3A5O S;  5KYX B;  1Q8G A;  1DEJ S;  1H1V G;  5L6W C;  5FAE A;  3DA7 A;  1AK7 A;  1C0G S;  1M2O A;  1M4J A;  1NLV G;  1T3Y A;  1COF A;  1YVN G;  5KYW B;  4KEE A;  1TMW A;  1SVY A;  2FH1 A;  1T3X A;  1V6F A;  5KYN A;  1T2L A;  3A5L S;  1M2V A;  5FAF A;  3EGX B;  3FG7 A;  1J72 A;  2FH2 A;  1NPH A;  1D0N A;  3A5M S;  2XF1 A;  1X67 A;  1MDU A;  4PKH B;  1AHQ A;  2L72 A;  2VIK A;  3EFO A;  1VFQ A;  3A5N S;  2KVK A;  1T44 G;  3EGD A;  1SVQ A;  2NUP B;  2FGH A;  3DAW B;  1D4X G;  3EG9 A;  5DD2 A;  1JHW A;  5KYU A;  4CBX G;  1QPV A;  2XFA A;  4KED A;  2QTV A;  2LLF A;  2VIL A;  1NM1 G;  2FH3 A;  3TU5 B;  1CFY A;  3Q2B A;  2VAC A;  2NUT A;  3CI5 G;  2MOT A;  3CJB G;  1NMD G;  1C0F S;  1Q8X A;  3CIP G;  3FFK A;  3L50 A;  5KYY A;  1F7S A;  1M2V B;  2D8B A;  1YAG G;  1P8Z G;  5KYX A;  4JD2 H;  2MV2 A;  3EFO B;  1PCX A;  2W0I A;  3EH2 A;  2MP4 A;  1WFS A;  4Z94 G;  2LXX A;  3EGD B;  5HVK D;  4CBU G;  1PD1 A;  1ESV S;  2FH4 A;  4PKI G;  5KYW A;  1UDM A;  3EG9 B;  4PKG G;  3FG6 A;  3EH1 A;  1KCQ A;  5KYU B;  2FF3 A;  1RGI G;  2LJ8 A;  1AK6 A;  1WM4 A;  3EGX A;  4S10 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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