4KGBA

Structure of succinyl-coa: 3-ketoacid coa transferase from drosophila melanogaster
Total Genus 139
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
139
sequence length
482
structure length
466
Chain Sequence
GKIYESAIDAVADVQDGAQILFGGFGICGIPEKMINALKQKGVKNITGVSNNGGVDDTGLGVLIKQKQVSKVIGSYVGENTELVRQYLEGELAVELTPQGTLAEKIRAGGAGIPAFYTPTGYATLVQEGGAPIKYSKDGKVEISSEKKPVKEFNGKNYVMEESIFADFAFVKAQKADPLGNLVFNKAARNFNAPMCRAAKITVAEVEEIVPIGALSPDEIHVPGIYINRIFKGTNYNKRVERLRITEPNPAQVLRERIARRVALEFHDGMYANLGIGIPVLSSNYIPKGMNVMLQSENGILGLGPFPTKDKVDPDLINAGKESVTVVPGASYFGSDDSFAMIRGGHVDITILGAMEVSATGDLANWMVKMGGAMDLVAAPGTKVIITMEHNARDGSPKILDTCSLPLTGKGVIDMIISEKAVFTVEKGVGLTLIEVAEGYTVDDIIASTGAKFTVSPNLKKMGQIP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Succinyl-CoA:3-ketoacid-coenzyme A transferase
publication title Structure of succinyl-CoA:3-ketoacid CoA transferase from Drosophila melanogaster.
pubmed doi rcsb
source organism Drosophila melanogaster
molecule tags Transferase
total genus 139
structure length 466
sequence length 482
chains with identical sequence B
ec nomenclature ec 2.8.3.5: 3-oxoacid CoA-transferase.
pdb deposition date 2013-04-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01144 CoA_trans Coenzyme A transferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 4kgbA01
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 4kgbA02
3K6MA 1K6DA 1OPEA 3CDKA 3EH7A 5DBNB 1M3EA 3D3UA 5DBNA 1O9LA 2HJ0A 1OOYA 2AHVA 1POIB 3DLXA 2AHWA 2NRCA 2NRBA 1POIA 1XR4A 3OXOA 3RRLB 1OOZA 3QDQA 3CDKB 2OASA 4KGBA 3GK7A 3RRLA 2AHUA
chains in the Genus database with same CATH superfamily
3K6MA 1K6DA 1OPEA 3CDKA 3EH7A 5DBNB 1M3EA 3D3UA 5DBNA 1O9LA 2HJ0A 1OOYA 2AHVA 1POIB 3DLXA 2AHWA 2NRCA 2NRBA 1POIA 1XR4A 3OXOA 3RRLB 1OOZA 3QDQA 3CDKB 2OASA 4KGBA 3GK7A 3RRLA 2AHUA
chains in the Genus database with same CATH topology
3K6MA 1K6DA 1OPEA 3CDKA 3EH7A 5DBNB 1M3EA 3D3UA 5DBNA 1O9LA 2HJ0A 1OOYA 2AHVA 1POIB 3DLXA 2AHWA 2NRCA 2NRBA 1POIA 1XR4A 3OXOA 3RRLB 1OOZA 3QDQA 3CDKB 2OASA 4KGBA 3GK7A 3RRLA 2AHUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3K6M A;  1K6D A;  1OPE A;  3CDK A;  3EH7 A;  5DBN B;  1M3E A;  3D3U A;  5DBN A;  1O9L A;  2HJ0 A;  1OOY A;  2AHV A;  1POI B;  3DLX A;  2AHW A;  2NRC A;  2NRB A;  1POI A;  1XR4 A;  3OXO A;  3RRL B;  1OOZ A;  3QDQ A;  3CDK B;  2OAS A;  4KGB A;  3GK7 A;  3RRL A;  2AHU A; 
#chains in the Genus database with same CATH topology
 3K6M A;  1K6D A;  1OPE A;  3CDK A;  3EH7 A;  5DBN B;  1M3E A;  3D3U A;  5DBN A;  1O9L A;  2HJ0 A;  1OOY A;  2AHV A;  1POI B;  3DLX A;  2AHW A;  2NRC A;  2NRB A;  1POI A;  1XR4 A;  3OXO A;  3RRL B;  1OOZ A;  3QDQ A;  3CDK B;  2OAS A;  4KGB A;  3GK7 A;  3RRL A;  2AHU A; 
#chains in the Genus database with same CATH homology
 3K6M A;  1K6D A;  1OPE A;  3CDK A;  3EH7 A;  5DBN B;  1M3E A;  3D3U A;  5DBN A;  1O9L A;  2HJ0 A;  1OOY A;  2AHV A;  1POI B;  3DLX A;  2AHW A;  2NRC A;  2NRB A;  1POI A;  1XR4 A;  3OXO A;  3RRL B;  1OOZ A;  3QDQ A;  3CDK B;  2OAS A;  4KGB A;  3GK7 A;  3RRL A;  2AHU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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