4KJDA

Ratintestinal ap expressed in e. coli
Total Genus 148
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
148
Knots found
sequence length
478
structure length
407
Chain Sequence
VEEENPVFWNQKAKEALDVAKKLQPIQTSAKNLILFLGDGMGVPTVTATRILKGQLGGHLGPETPLAMDHFPFTALSKTYNVDRQVPDAGTATAYLCGVKANYKTIGVSAAARFNQCNSTFGNEVFSVMHRAKKAGKSVGVVTTTRVQHASPAGTYAHTVNRDWYSDADMPSSALQEGCKDIATQLISNMDIDVILGGGRKFMFPKGTPDPEYPGDSDQSGVRLDSRNLVEEWLAKYQGTRYVWNREQLMQASQDPAVTRLMGLFEPTEMKYDVNRNASADPSLAEMTEVAVRLLSRNPQGFYLFVEGGRIDQGHTAYLALTEAVMFDSAIEKASQLTNEKDTLTLITADHSHVTLRHGGEDVAIFARGPQAHLVHGVQEQNYIAHVMAFAGCLEPYTDCGLAPPAD
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Rattus norvegicus
publication title Crystal structure of rat intestinal alkaline phosphatase - Role of crown domain in mammalian alkaline phosphatases.
pubmed doi rcsb
molecule keywords Intestinal-type alkaline phosphatase 1
total genus 148
structure length 407
sequence length 478
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 2013-05-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 4kjdA00
1EW9A 2IUCB 4LRDA 2GSUA 5C66A 1ED9A 2ZKTA 5GOVA 4LREA 1ZEFA 3UN2A 1URAA 1KHKA 2GA3A 4CYSA 1E33P 1EW2A 3M8YA 4LR7A 5K4PA 3NKQA 4KJDA 1O98A 3B5QA 4GTWA 3BDFA 4ZG9A 2GSOA 1KH7A 2W5QA 2RH6A 3WAXA 5IJQA 2QZUA 3WAWA 3UNYA 5LRMA 3TG0A 3SZZA 4CXSA 4B56A 1ANIA 2W5TA 2VQRA 3M8WA 3T02A 3TWZA 3M8ZA 1ELZA 4UOPA 1E2SP 3UN3A 1EW8A 5L0EA 3NKOA 3IDDA 3NKPA 3DYCA 1AJCA 3M7VA 1KHLA 1Y6VA 1K7HA 3MK2A 5INHA 4LRAA 2G9YA 3LXQA 4MY4A 5L0KA 1ALJA 5EGHA 5GRRA 4UOOA 3OT9A 3TX0A 1HDHA 5HRTA 4GTZA 4GTXA 1AJBA 3T00A 1O99A 4UPHA 1HJKA 2W5VA 3WAYA 2W5SA 1KHNA 1SHQA 4QAXA 2XR9A 5AJ9A 4UPKA 4CXKA 3E2DA 4NWXA 1URBA 4MHXA 4CYRA 4ZG7A 4FDIA 1N2KA 4LRBA 3Q3QA 4N7TA 4NWJA 2D1GA 1KH5A 1AJAA 3SZYA 3UN5A 5DLTA 3NKRA 5IJSA 1E3CP 2X98A 4KJGA 5DLWA 3BDHA 1ZEDA 3NKNA 2W8SA 1FSUA 3CMRA 3MK0A 3ED4A 1ZEBA 1ANJA 1ED8A 4KAYA 1KH9A 1E1ZP 1P49A 1ELYA 5LRNA 1ALHA 1ALKA 3BDGB 4LR9A 3NKMA 4FDJA 2IFYA 4LR8A 3UO0A 2GLQA 1ALIA 4LRFA 4KAVA 1SHNA 1ELXA 2W5WA 4UPLA 2W8DA 4KM4A 2ANHA 3MK1A 2GSNA 5DLVA 1EJJA 5EGEA 1Y7AA 2XRGA 4YR1A 4LR2A 3NVLA 3WBHA 3BDGA 4GTYA 1AJDA 3DPCA 1AUKA 2W5XA 1B8JA 3IGYB 3T01A 3KD8A 5L0BA 4ZG6A 1EQJA 1KH4A 3WAVA 5LIAA 1HQAA 4LRCA 4UPIA 3IGZB 4CXUA 2IUCA 4ZGAA 5KXAA 4TN0A 2W5RA 5TJ3A 4LQYA 4UORA 1KHJA 5LQQA 3A52A 4MIVA 1N2LA 1EI6A
chains in the Genus database with same CATH superfamily
1EW9A 2IUCB 4LRDA 2GSUA 5C66A 1ED9A 2ZKTA 5GOVA 4LREA 1ZEFA 3UN2A 1URAA 1KHKA 2GA3A 4CYSA 1E33P 1EW2A 3M8YA 4LR7A 5K4PA 3NKQA 4KJDA 1O98A 3B5QA 4GTWA 3BDFA 4ZG9A 2GSOA 1KH7A 2W5QA 2RH6A 3WAXA 5IJQA 2QZUA 3WAWA 3UNYA 5LRMA 3TG0A 3SZZA 4CXSA 4B56A 1ANIA 2W5TA 2VQRA 3M8WA 3T02A 3TWZA 3M8ZA 1ELZA 4UOPA 1E2SP 3UN3A 1EW8A 5L0EA 3NKOA 3IDDA 3NKPA 3DYCA 1AJCA 3M7VA 1KHLA 1Y6VA 1K7HA 3MK2A 5INHA 4LRAA 2G9YA 3LXQA 4MY4A 5L0KA 1ALJA 5EGHA 5GRRA 4UOOA 3OT9A 3TX0A 1HDHA 5HRTA 4GTZA 4GTXA 1AJBA 3T00A 1O99A 4UPHA 1HJKA 2W5VA 3WAYA 2W5SA 1KHNA 1SHQA 4QAXA 2XR9A 5AJ9A 4UPKA 4CXKA 3E2DA 4NWXA 1URBA 4MHXA 4CYRA 4ZG7A 4FDIA 1N2KA 4LRBA 3Q3QA 4N7TA 4NWJA 2D1GA 1KH5A 1AJAA 3SZYA 3UN5A 5DLTA 3NKRA 5IJSA 1E3CP 2X98A 4KJGA 5DLWA 3BDHA 1ZEDA 3NKNA 2W8SA 1FSUA 3CMRA 3MK0A 3ED4A 1ZEBA 1ANJA 1ED8A 4KAYA 1KH9A 1E1ZP 1P49A 1ELYA 5LRNA 1ALHA 1ALKA 3BDGB 4LR9A 3NKMA 4FDJA 2IFYA 4LR8A 3UO0A 2GLQA 1ALIA 4LRFA 4KAVA 1SHNA 1ELXA 2W5WA 4UPLA 2W8DA 4KM4A 2ANHA 3MK1A 2GSNA 5DLVA 1EJJA 5EGEA 1Y7AA 2XRGA 4YR1A 4LR2A 3NVLA 3WBHA 3BDGA 4GTYA 1AJDA 3DPCA 1AUKA 2W5XA 1B8JA 3IGYB 3T01A 3KD8A 5L0BA 4ZG6A 1EQJA 1KH4A 3WAVA 5LIAA 1HQAA 4LRCA 4UPIA 3IGZB 4CXUA 2IUCA 4ZGAA 5KXAA 4TN0A 2W5RA 5TJ3A 4LQYA 4UORA 1KHJA 5LQQA 3A52A 4MIVA 1N2LA 1EI6A
chains in the Genus database with same CATH topology
1EW9A 2IUCB 4LRDA 2GSUA 5C66A 1ED9A 2ZKTA 5GOVA 4LREA 1ZEFA 3UN2A 1URAA 1KHKA 2GA3A 4CYSA 1E33P 1EW2A 3M8YA 4LR7A 5K4PA 3NKQA 4KJDA 1O98A 3B5QA 4GTWA 3BDFA 4ZG9A 2GSOA 1KH7A 2W5QA 2RH6A 3WAXA 5IJQA 2QZUA 3WAWA 3UNYA 5LRMA 3TG0A 3SZZA 4CXSA 4B56A 1ANIA 2W5TA 2VQRA 3M8WA 3T02A 3TWZA 3M8ZA 1ELZA 4UOPA 1E2SP 3UN3A 1EW8A 5L0EA 3NKOA 3IDDA 3NKPA 3DYCA 1AJCA 3M7VA 1KHLA 1Y6VA 1K7HA 3MK2A 5INHA 4LRAA 2G9YA 3LXQA 4MY4A 5L0KA 1ALJA 5EGHA 5GRRA 4UOOA 3OT9A 3TX0A 1HDHA 5HRTA 4GTZA 4GTXA 1AJBA 3T00A 1O99A 4UPHA 1HJKA 2W5VA 3WAYA 2W5SA 1KHNA 1SHQA 4QAXA 2XR9A 5AJ9A 4UPKA 4CXKA 3E2DA 4NWXA 1URBA 4MHXA 4CYRA 4ZG7A 4FDIA 1N2KA 4LRBA 3Q3QA 4N7TA 4NWJA 2D1GA 1KH5A 1AJAA 3SZYA 3UN5A 5DLTA 3NKRA 5IJSA 1E3CP 2X98A 4KJGA 5DLWA 3BDHA 1ZEDA 3NKNA 2W8SA 1FSUA 3CMRA 3MK0A 3ED4A 1ZEBA 1ANJA 1ED8A 4KAYA 1KH9A 1E1ZP 1P49A 1ELYA 5LRNA 1ALHA 1ALKA 3BDGB 4LR9A 3NKMA 4FDJA 2IFYA 4LR8A 3UO0A 2GLQA 1ALIA 4LRFA 4KAVA 1SHNA 1ELXA 2W5WA 4UPLA 2W8DA 4KM4A 2ANHA 3MK1A 2GSNA 5DLVA 1EJJA 5EGEA 1Y7AA 2XRGA 4YR1A 4LR2A 3NVLA 3WBHA 3BDGA 4GTYA 1AJDA 3DPCA 1AUKA 2W5XA 1B8JA 3IGYB 3T01A 3KD8A 5L0BA 4ZG6A 1EQJA 1KH4A 3WAVA 5LIAA 1HQAA 4LRCA 4UPIA 3IGZB 4CXUA 2IUCA 4ZGAA 5KXAA 4TN0A 2W5RA 5TJ3A 4LQYA 4UORA 1KHJA 5LQQA 3A52A 4MIVA 1N2LA 1EI6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EW9 A;  2IUC B;  4LRD A;  2GSU A;  5C66 A;  1ED9 A;  2ZKT A;  5GOV A;  4LRE A;  1ZEF A;  3UN2 A;  1URA A;  1KHK A;  2GA3 A;  4CYS A;  1E33 P;  1EW2 A;  3M8Y A;  4LR7 A;  5K4P A;  3NKQ A;  4KJD A;  1O98 A;  3B5Q A;  4GTW A;  3BDF A;  4ZG9 A;  2GSO A;  1KH7 A;  2W5Q A;  2RH6 A;  3WAX A;  5IJQ A;  2QZU A;  3WAW A;  3UNY A;  5LRM A;  3TG0 A;  3SZZ A;  4CXS A;  4B56 A;  1ANI A;  2W5T A;  2VQR A;  3M8W A;  3T02 A;  3TWZ A;  3M8Z A;  1ELZ A;  4UOP A;  1E2S P;  3UN3 A;  1EW8 A;  5L0E A;  3NKO A;  3IDD A;  3NKP A;  3DYC A;  1AJC A;  3M7V A;  1KHL A;  1Y6V A;  1K7H A;  3MK2 A;  5INH A;  4LRA A;  2G9Y A;  3LXQ A;  4MY4 A;  5L0K A;  1ALJ A;  5EGH A;  5GRR A;  4UOO A;  3OT9 A;  3TX0 A;  1HDH A;  5HRT A;  4GTZ A;  4GTX A;  1AJB A;  3T00 A;  1O99 A;  4UPH A;  1HJK A;  2W5V A;  3WAY A;  2W5S A;  1KHN A;  1SHQ A;  4QAX A;  2XR9 A;  5AJ9 A;  4UPK A;  4CXK A;  3E2D A;  4NWX A;  1URB A;  4MHX A;  4CYR A;  4ZG7 A;  4FDI A;  1N2K A;  4LRB A;  3Q3Q A;  4N7T A;  4NWJ A;  2D1G A;  1KH5 A;  1AJA A;  3SZY A;  3UN5 A;  5DLT A;  3NKR A;  5IJS A;  1E3C P;  2X98 A;  4KJG A;  5DLW A;  3BDH A;  1ZED A;  3NKN A;  2W8S A;  1FSU A;  3CMR A;  3MK0 A;  3ED4 A;  1ZEB A;  1ANJ A;  1ED8 A;  4KAY A;  1KH9 A;  1E1Z P;  1P49 A;  1ELY A;  5LRN A;  1ALH A;  1ALK A;  3BDG B;  4LR9 A;  3NKM A;  4FDJ A;  2IFY A;  4LR8 A;  3UO0 A;  2GLQ A;  1ALI A;  4LRF A;  4KAV A;  1SHN A;  1ELX A;  2W5W A;  4UPL A;  2W8D A;  4KM4 A;  2ANH A;  3MK1 A;  2GSN A;  5DLV A;  1EJJ A;  5EGE A;  1Y7A A;  2XRG A;  4YR1 A;  4LR2 A;  3NVL A;  3WBH A;  3BDG A;  4GTY A;  1AJD A;  3DPC A;  1AUK A;  2W5X A;  1B8J A;  3IGY B;  3T01 A;  3KD8 A;  5L0B A;  4ZG6 A;  1EQJ A;  1KH4 A;  3WAV A;  5LIA A;  1HQA A;  4LRC A;  4UPI A;  3IGZ B;  4CXU A;  2IUC A;  4ZGA A;  5KXA A;  4TN0 A;  2W5R A;  5TJ3 A;  4LQY A;  4UOR A;  1KHJ A;  5LQQ A;  3A52 A;  4MIV A;  1N2L A;  1EI6 A; 
#chains in the Genus database with same CATH topology
 1EW9 A;  2IUC B;  4LRD A;  2GSU A;  5C66 A;  1ED9 A;  2ZKT A;  5GOV A;  4LRE A;  1ZEF A;  3UN2 A;  1URA A;  1KHK A;  2GA3 A;  4CYS A;  1E33 P;  1EW2 A;  3M8Y A;  4LR7 A;  5K4P A;  3NKQ A;  4KJD A;  1O98 A;  3B5Q A;  4GTW A;  3BDF A;  4ZG9 A;  2GSO A;  1KH7 A;  2W5Q A;  2RH6 A;  3WAX A;  5IJQ A;  2QZU A;  3WAW A;  3UNY A;  5LRM A;  3TG0 A;  3SZZ A;  4CXS A;  4B56 A;  1ANI A;  2W5T A;  2VQR A;  3M8W A;  3T02 A;  3TWZ A;  3M8Z A;  1ELZ A;  4UOP A;  1E2S P;  3UN3 A;  1EW8 A;  5L0E A;  3NKO A;  3IDD A;  3NKP A;  3DYC A;  1AJC A;  3M7V A;  1KHL A;  1Y6V A;  1K7H A;  3MK2 A;  5INH A;  4LRA A;  2G9Y A;  3LXQ A;  4MY4 A;  5L0K A;  1ALJ A;  5EGH A;  5GRR A;  4UOO A;  3OT9 A;  3TX0 A;  1HDH A;  5HRT A;  4GTZ A;  4GTX A;  1AJB A;  3T00 A;  1O99 A;  4UPH A;  1HJK A;  2W5V A;  3WAY A;  2W5S A;  1KHN A;  1SHQ A;  4QAX A;  2XR9 A;  5AJ9 A;  4UPK A;  4CXK A;  3E2D A;  4NWX A;  1URB A;  4MHX A;  4CYR A;  4ZG7 A;  4FDI A;  1N2K A;  4LRB A;  3Q3Q A;  4N7T A;  4NWJ A;  2D1G A;  1KH5 A;  1AJA A;  3SZY A;  3UN5 A;  5DLT A;  3NKR A;  5IJS A;  1E3C P;  2X98 A;  4KJG A;  5DLW A;  3BDH A;  1ZED A;  3NKN A;  2W8S A;  1FSU A;  3CMR A;  3MK0 A;  3ED4 A;  1ZEB A;  1ANJ A;  1ED8 A;  4KAY A;  1KH9 A;  1E1Z P;  1P49 A;  1ELY A;  5LRN A;  1ALH A;  1ALK A;  3BDG B;  4LR9 A;  3NKM A;  4FDJ A;  2IFY A;  4LR8 A;  3UO0 A;  2GLQ A;  1ALI A;  4LRF A;  4KAV A;  1SHN A;  1ELX A;  2W5W A;  4UPL A;  2W8D A;  4KM4 A;  2ANH A;  3MK1 A;  2GSN A;  5DLV A;  1EJJ A;  5EGE A;  1Y7A A;  2XRG A;  4YR1 A;  4LR2 A;  3NVL A;  3WBH A;  3BDG A;  4GTY A;  1AJD A;  3DPC A;  1AUK A;  2W5X A;  1B8J A;  3IGY B;  3T01 A;  3KD8 A;  5L0B A;  4ZG6 A;  1EQJ A;  1KH4 A;  3WAV A;  5LIA A;  1HQA A;  4LRC A;  4UPI A;  3IGZ B;  4CXU A;  2IUC A;  4ZGA A;  5KXA A;  4TN0 A;  2W5R A;  5TJ3 A;  4LQY A;  4UOR A;  1KHJ A;  5LQQ A;  3A52 A;  4MIV A;  1N2L A;  1EI6 A; 
#chains in the Genus database with same CATH homology
 1EW9 A;  2IUC B;  4LRD A;  2GSU A;  5C66 A;  1ED9 A;  2ZKT A;  5GOV A;  4LRE A;  1ZEF A;  3UN2 A;  1URA A;  1KHK A;  2GA3 A;  4CYS A;  1E33 P;  1EW2 A;  3M8Y A;  4LR7 A;  5K4P A;  3NKQ A;  4KJD A;  1O98 A;  3B5Q A;  4GTW A;  3BDF A;  4ZG9 A;  2GSO A;  1KH7 A;  2W5Q A;  2RH6 A;  3WAX A;  5IJQ A;  2QZU A;  3WAW A;  3UNY A;  5LRM A;  3TG0 A;  3SZZ A;  4CXS A;  4B56 A;  1ANI A;  2W5T A;  2VQR A;  3M8W A;  3T02 A;  3TWZ A;  3M8Z A;  1ELZ A;  4UOP A;  1E2S P;  3UN3 A;  1EW8 A;  5L0E A;  3NKO A;  3IDD A;  3NKP A;  3DYC A;  1AJC A;  3M7V A;  1KHL A;  1Y6V A;  1K7H A;  3MK2 A;  5INH A;  4LRA A;  2G9Y A;  3LXQ A;  4MY4 A;  5L0K A;  1ALJ A;  5EGH A;  5GRR A;  4UOO A;  3OT9 A;  3TX0 A;  1HDH A;  5HRT A;  4GTZ A;  4GTX A;  1AJB A;  3T00 A;  1O99 A;  4UPH A;  1HJK A;  2W5V A;  3WAY A;  2W5S A;  1KHN A;  1SHQ A;  4QAX A;  2XR9 A;  5AJ9 A;  4UPK A;  4CXK A;  3E2D A;  4NWX A;  1URB A;  4MHX A;  4CYR A;  4ZG7 A;  4FDI A;  1N2K A;  4LRB A;  3Q3Q A;  4N7T A;  4NWJ A;  2D1G A;  1KH5 A;  1AJA A;  3SZY A;  3UN5 A;  5DLT A;  3NKR A;  5IJS A;  1E3C P;  2X98 A;  4KJG A;  5DLW A;  3BDH A;  1ZED A;  3NKN A;  2W8S A;  1FSU A;  3CMR A;  3MK0 A;  3ED4 A;  1ZEB A;  1ANJ A;  1ED8 A;  4KAY A;  1KH9 A;  1E1Z P;  1P49 A;  1ELY A;  5LRN A;  1ALH A;  1ALK A;  3BDG B;  4LR9 A;  3NKM A;  4FDJ A;  2IFY A;  4LR8 A;  3UO0 A;  2GLQ A;  1ALI A;  4LRF A;  4KAV A;  1SHN A;  1ELX A;  2W5W A;  4UPL A;  2W8D A;  4KM4 A;  2ANH A;  3MK1 A;  2GSN A;  5DLV A;  1EJJ A;  5EGE A;  1Y7A A;  2XRG A;  4YR1 A;  4LR2 A;  3NVL A;  3WBH A;  3BDG A;  4GTY A;  1AJD A;  3DPC A;  1AUK A;  2W5X A;  1B8J A;  3IGY B;  3T01 A;  3KD8 A;  5L0B A;  4ZG6 A;  1EQJ A;  1KH4 A;  3WAV A;  5LIA A;  1HQA A;  4LRC A;  4UPI A;  3IGZ B;  4CXU A;  2IUC A;  4ZGA A;  5KXA A;  4TN0 A;  2W5R A;  5TJ3 A;  4LQY A;  4UOR A;  1KHJ A;  5LQQ A;  3A52 A;  4MIV A;  1N2L A;  1EI6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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