4KJUA

Crystal structure of xiap-bir2 with a bound benzodiazepinone inhibitor.
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
82
structure length
82
Chain Sequence
GTIYPRNPAMYSEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFACGGKLKNWEPGDRAWSEHRRHFPNCFFVLG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Apoptosis/apoptosis inhibitor
molecule keywords E3 ubiquitin-protein ligase XIAP
publication title Optimization of Benzodiazepinones as Selective Inhibitors of the X-Linked Inhibitor of Apoptosis Protein (XIAP) Second Baculovirus IAP Repeat (BIR2) Domain.
pubmed doi rcsb
source organism Homo sapiens
total genus 20
structure length 82
sequence length 82
chains with identical sequence C
ec nomenclature ec 2.3.2.27: RING-type E3 ubiquitin transferase.
pdb deposition date 2013-05-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00653 BIR Inhibitor of Apoptosis domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1170.10 Mainly Alpha Orthogonal Bundle Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A 4kjuA00
1SE0A 1Q4QA 4HY0A 3F7HA 1OXNA 1TFQA 2JK7A 3GT9A 3M0AD 5C83A 4KMPA 1G73C 3UIKA 4J45A 3UEGA 5C84A 4WVTA 3UEEA 3F7IA 4WVSA 4HY4A 1NW9A 3HL5A 4J3YA 1F3HA 4KJUA 4EB9A 1XB0A 2I3HA 2OPYA 2UVLA 3MUPA 4J44A 5C3HA 1C9QA 1XOXA 3UW4A 4KMNA 3UIJA 3SIPE 3CM2A 1G3FA 3UEFA 4WVUA 2RAXA 3G76A 3D9UA 5C0KA 1SDZA 3GTAA 4EC4A 3UIIA 1QBHA 3UIGA 4HY5A 1E31A 2QRAA 3OZ1A 1JD4A 1JD6A 5C7CA 3CLXA 2QFAA 4J46A 5C7BA 1JD5A 2RAWA 4A0IA 1M4MA 3SIQA 4KJVA 1F9XA 2VM5A 3M1DA 4J47A 4MTZA 4OXCA 3M0DD 3UEDA 5C7AA 1TFTA 4A0NA 1OXQA 4J48A 1TW6A 3UEIA 3F7GA 4LGUA 5C3KA 5C7DA 3EYLA 4LGEA 4A0JA 1OY7A 2I3IA 4MTIA 3UIHA 1XB1A 1I3OE 3D9TA 3UECA 4MU7A 2POIA 3UEHA 2VSLA 3CM7A 5C0LA 3T6PA 2POPB 2OPZA 3UW5A
chains in the Genus database with same CATH superfamily
1SE0A 1Q4QA 4HY0A 3F7HA 1OXNA 1TFQA 2JK7A 3GT9A 3M0AD 5C83A 4KMPA 1G73C 3UIKA 4J45A 3UEGA 5C84A 4WVTA 3UEEA 3F7IA 4WVSA 4HY4A 1NW9A 3HL5A 4J3YA 1F3HA 4KJUA 4EB9A 1XB0A 2I3HA 2OPYA 2UVLA 3MUPA 4J44A 5C3HA 1C9QA 1XOXA 3UW4A 4KMNA 3UIJA 3SIPE 3CM2A 1G3FA 3UEFA 4WVUA 2RAXA 3G76A 3D9UA 5C0KA 1SDZA 3GTAA 4EC4A 3UIIA 1QBHA 3UIGA 4HY5A 1E31A 2QRAA 3OZ1A 1JD4A 1JD6A 5C7CA 3CLXA 2QFAA 4J46A 5C7BA 1JD5A 2RAWA 4A0IA 1M4MA 3SIQA 4KJVA 1F9XA 2VM5A 3M1DA 4J47A 4MTZA 4OXCA 3M0DD 3UEDA 5C7AA 1TFTA 4A0NA 1OXQA 4J48A 1TW6A 3UEIA 3F7GA 4LGUA 5C3KA 5C7DA 3EYLA 4LGEA 4A0JA 1OY7A 2I3IA 4MTIA 3UIHA 1XB1A 1I3OE 3D9TA 3UECA 4MU7A 2POIA 3UEHA 2VSLA 3CM7A 5C0LA 3T6PA 2POPB 2OPZA 3UW5A
chains in the Genus database with same CATH topology
1SE0A 1Q4QA 4HY0A 3F7HA 1OXNA 1TFQA 2JK7A 3GT9A 3M0AD 5C83A 4KMPA 1G73C 3UIKA 4J45A 3UEGA 5C84A 4WVTA 3UEEA 3F7IA 4WVSA 4HY4A 1NW9A 3HL5A 4J3YA 1F3HA 4KJUA 4EB9A 1XB0A 2I3HA 2OPYA 2UVLA 3MUPA 4J44A 5C3HA 1C9QA 1XOXA 3UW4A 4KMNA 3UIJA 3SIPE 3CM2A 1G3FA 3UEFA 4WVUA 2RAXA 3G76A 3D9UA 5C0KA 1SDZA 3GTAA 4EC4A 3UIIA 1QBHA 3UIGA 4HY5A 1E31A 2QRAA 3OZ1A 1JD4A 1JD6A 5C7CA 3CLXA 2QFAA 4J46A 5C7BA 1JD5A 2RAWA 4A0IA 1M4MA 3SIQA 4KJVA 1F9XA 2VM5A 3M1DA 4J47A 4MTZA 4OXCA 3M0DD 3UEDA 5C7AA 1TFTA 4A0NA 1OXQA 4J48A 1TW6A 3UEIA 3F7GA 4LGUA 5C3KA 5C7DA 3EYLA 4LGEA 4A0JA 1OY7A 2I3IA 4MTIA 3UIHA 1XB1A 1I3OE 3D9TA 3UECA 4MU7A 2POIA 3UEHA 2VSLA 3CM7A 5C0LA 3T6PA 2POPB 2OPZA 3UW5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1SE0 A;  1Q4Q A;  4HY0 A;  3F7H A;  1OXN A;  1TFQ A;  2JK7 A;  3GT9 A;  3M0A D;  5C83 A;  4KMP A;  1G73 C;  3UIK A;  4J45 A;  3UEG A;  5C84 A;  4WVT A;  3UEE A;  3F7I A;  4WVS A;  4HY4 A;  1NW9 A;  3HL5 A;  4J3Y A;  1F3H A;  4KJU A;  4EB9 A;  1XB0 A;  2I3H A;  2OPY A;  2UVL A;  3MUP A;  4J44 A;  5C3H A;  1C9Q A;  1XOX A;  3UW4 A;  4KMN A;  3UIJ A;  3SIP E;  3CM2 A;  1G3F A;  3UEF A;  4WVU A;  2RAX A;  3G76 A;  3D9U A;  5C0K A;  1SDZ A;  3GTA A;  4EC4 A;  3UII A;  1QBH A;  3UIG A;  4HY5 A;  1E31 A;  2QRA A;  3OZ1 A;  1JD4 A;  1JD6 A;  5C7C A;  3CLX A;  2QFA A;  4J46 A;  5C7B A;  1JD5 A;  2RAW A;  4A0I A;  1M4M A;  3SIQ A;  4KJV A;  1F9X A;  2VM5 A;  3M1D A;  4J47 A;  4MTZ A;  4OXC A;  3M0D D;  3UED A;  5C7A A;  1TFT A;  4A0N A;  1OXQ A;  4J48 A;  1TW6 A;  3UEI A;  3F7G A;  4LGU A;  5C3K A;  5C7D A;  3EYL A;  4LGE A;  4A0J A;  1OY7 A;  2I3I A;  4MTI A;  3UIH A;  1XB1 A;  1I3O E;  3D9T A;  3UEC A;  4MU7 A;  2POI A;  3UEH A;  2VSL A;  3CM7 A;  5C0L A;  3T6P A;  2POP B;  2OPZ A;  3UW5 A; 
#chains in the Genus database with same CATH topology
 1SE0 A;  1Q4Q A;  4HY0 A;  3F7H A;  1OXN A;  1TFQ A;  2JK7 A;  3GT9 A;  3M0A D;  5C83 A;  4KMP A;  1G73 C;  3UIK A;  4J45 A;  3UEG A;  5C84 A;  4WVT A;  3UEE A;  3F7I A;  4WVS A;  4HY4 A;  1NW9 A;  3HL5 A;  4J3Y A;  1F3H A;  4KJU A;  4EB9 A;  1XB0 A;  2I3H A;  2OPY A;  2UVL A;  3MUP A;  4J44 A;  5C3H A;  1C9Q A;  1XOX A;  3UW4 A;  4KMN A;  3UIJ A;  3SIP E;  3CM2 A;  1G3F A;  3UEF A;  4WVU A;  2RAX A;  3G76 A;  3D9U A;  5C0K A;  1SDZ A;  3GTA A;  4EC4 A;  3UII A;  1QBH A;  3UIG A;  4HY5 A;  1E31 A;  2QRA A;  3OZ1 A;  1JD4 A;  1JD6 A;  5C7C A;  3CLX A;  2QFA A;  4J46 A;  5C7B A;  1JD5 A;  2RAW A;  4A0I A;  1M4M A;  3SIQ A;  4KJV A;  1F9X A;  2VM5 A;  3M1D A;  4J47 A;  4MTZ A;  4OXC A;  3M0D D;  3UED A;  5C7A A;  1TFT A;  4A0N A;  1OXQ A;  4J48 A;  1TW6 A;  3UEI A;  3F7G A;  4LGU A;  5C3K A;  5C7D A;  3EYL A;  4LGE A;  4A0J A;  1OY7 A;  2I3I A;  4MTI A;  3UIH A;  1XB1 A;  1I3O E;  3D9T A;  3UEC A;  4MU7 A;  2POI A;  3UEH A;  2VSL A;  3CM7 A;  5C0L A;  3T6P A;  2POP B;  2OPZ A;  3UW5 A; 
#chains in the Genus database with same CATH homology
 1SE0 A;  1Q4Q A;  4HY0 A;  3F7H A;  1OXN A;  1TFQ A;  2JK7 A;  3GT9 A;  3M0A D;  5C83 A;  4KMP A;  1G73 C;  3UIK A;  4J45 A;  3UEG A;  5C84 A;  4WVT A;  3UEE A;  3F7I A;  4WVS A;  4HY4 A;  1NW9 A;  3HL5 A;  4J3Y A;  1F3H A;  4KJU A;  4EB9 A;  1XB0 A;  2I3H A;  2OPY A;  2UVL A;  3MUP A;  4J44 A;  5C3H A;  1C9Q A;  1XOX A;  3UW4 A;  4KMN A;  3UIJ A;  3SIP E;  3CM2 A;  1G3F A;  3UEF A;  4WVU A;  2RAX A;  3G76 A;  3D9U A;  5C0K A;  1SDZ A;  3GTA A;  4EC4 A;  3UII A;  1QBH A;  3UIG A;  4HY5 A;  1E31 A;  2QRA A;  3OZ1 A;  1JD4 A;  1JD6 A;  5C7C A;  3CLX A;  2QFA A;  4J46 A;  5C7B A;  1JD5 A;  2RAW A;  4A0I A;  1M4M A;  3SIQ A;  4KJV A;  1F9X A;  2VM5 A;  3M1D A;  4J47 A;  4MTZ A;  4OXC A;  3M0D D;  3UED A;  5C7A A;  1TFT A;  4A0N A;  1OXQ A;  4J48 A;  1TW6 A;  3UEI A;  3F7G A;  4LGU A;  5C3K A;  5C7D A;  3EYL A;  4LGE A;  4A0J A;  1OY7 A;  2I3I A;  4MTI A;  3UIH A;  1XB1 A;  1I3O E;  3D9T A;  3UEC A;  4MU7 A;  2POI A;  3UEH A;  2VSL A;  3CM7 A;  5C0L A;  3T6P A;  2POP B;  2OPZ A;  3UW5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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