4KMIA

Crystal structure of 4-o-beta-d-mannosyl-d-glucose phosphorylase mgp complexed with po4
Total Genus 100
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
100
sequence length
389
structure length
381
Chain Sequence
SLFNDKVAKLLAGHEALLMRKNEPVEEGNGVITRYRYPVLTAAHTPVFWRYDLNEETNPFLMERIGMNATLNAGAIKWDGKYLMLVRVEGADRKSFFAVAESPNGIDNFRFWEYPVTLPEDVVPATNVYDMRLTAHEDGWIYGIFCAERHDDNAPIGDLSSATATAGIARTKDLKNWERLPDLKTKSQQRNVVLHPEFVDGKYALYTRPQGGGIGWALIDDITHAEVGEEKIIDKRYYHTIKEVKNGEGPHPIKTPQGWLHLAHGVRNCAAGLRYVLYMYMTSLDDPTRLIASPAGYFMAPVGEERIGDVSNVLFSNGWIADDDGKVFIYYASSDTRMHVATSTIERLVDYCLHTPQDGFSSSASVEILKNLIERNLRLMK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords 4-O-beta-D-mannosyl-D-glucose phosphorylase
publication title Structure of Novel Enzyme in Mannan Biodegradation Process 4-O-beta-d-Mannosyl-d-Glucose Phosphorylase MGP
pubmed doi rcsb
source organism Bacteroides fragilis
total genus 100
structure length 381
sequence length 389
chains with identical sequence B
ec nomenclature ec 2.4.1.281: 4-O-beta-D-mannosyl-D-glucose phosphorylase.
pdb deposition date 2013-05-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04041 Glyco_hydro_130 beta-1,4-mannooligosaccharide phosphorylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.115.10.20 Mainly Beta 5 Propeller Tachylectin-2; Chain A Glycosyl hydrolase domain; family 43 4kmiA00
3PIGA 2QQUA 5JOYA 3C2UA 4NOVA 3P2NA 3R4YA 5GLQA 5A8DA 3KF3A 3QEFA 3C7OA 4MLGA 3U14A 5FKBA 1W18A 3ZXJA 3KF5A 3D5YA 3RWKX 5JOZA 4UDIA 4KC8A 4FFFA 4N4BA 3VSSA 1Y9GA 1UYPA 3LIGA 3KSTA 3QEDA 4D47A 3WPYA 4QQSA 3WPZA 2EXIA 3PIJA 5JOXA 1Y4WA 5GLRA 3UGGA 4UDKA 4AK6A 4UDGA 5C0PA 4EQVA 3C7EA 2VDTA 3UGHA 1Y9MA 4N2RA 4KCBA 3WMZA 2AC1A 2YFTA 2EXJA 2OXBA 3AKIA 3AKGA 5AY9A 3C7HA 1GYDB 1W2TA 5FIXA 5FKCA 4FFIA 3BYKA 5A7VA 2ADDA 3LV4A 2QQVA 5AYDA 3TAWA 2EXHA 1ST8A 5A7VB 1YI7A 4U6BA 1PT2A 5JOWA 3OM6A 5GLOA 1OYGA 4O8NA 3K1UA 5FK7A 5FMCA 3C7FA 4N1IA 3QEEA 1GYEB 4FFHA 5AYEA 4AK7A 3R4ZA 4PVIA 4KCAA 3D5ZA 3AKHA 2ADEA 4U6DA 3OM5A 3D61A 3LIHA 4KC7A 5GLMA 3ZXLA 3ZXKA 1Y7BA 3LFIA 3WN1A 3BYLA 5GLPA 3WN2A 3CU9A 3OM2A 4KMIA 4O8PA 5FLWA 3VT2A 3AKFA 3OM7A 2YFRA 5FK8A 3WAUA 1YRZA 3D60A 3VT0A 4UDJA 2EXKA 3OM4A 5GLKA 5B6TA 2XQRA 4N2ZA 5A8CA 3VSZA 4FFGA 3U75A 3C7GA 2QQWA 3NQHA 3VT1A 4PVAA 3WN0A 2B4WA 5FMBA 3WATA 2YFSA 5GLLA 3BYNA 3WMYA 1UV4A 5AYCA 4ONZA 3BYJA 3WPVA 3UGFA 2X8TA 3LDRA 5B6SA 2X8FA 1VKDA 2AEZA 2AEYA 3SC7X 3LEMA 4COTA 4AK5A 3QC2A 5ANNA 5GLNA 3VSRA 3R67A 4O8OA 3WASA 1YIFA 4UDKE 3VSFA 1GYHA 3QZ4A 3LF7A 5FMDA 3WPUA 3LDKA 1WL7A 2X8SA
chains in the Genus database with same CATH superfamily
3PIGA 2QQUA 5JOYA 3C2UA 4NOVA 3P2NA 3R4YA 5GLQA 5A8DA 3KF3A 3QEFA 3C7OA 4MLGA 3U14A 5FKBA 1W18A 3ZXJA 3KF5A 5C2MA 3D5YA 3RWKX 5JOZA 4UDIA 4KC8A 4FFFA 4N4BA 3VSSA 1Y9GA 1UYPA 3LIGA 3KSTA 3QEDA 4D47A 3WPYA 4QQSA 3WPZA 2EXIA 3PIJA 5JOXA 1Y4WA 5GLRA 3UGGA 4UDKA 4AK6A 4UDGA 5C0PA 4EQVA 3C7EA 2VDTA 3UGHA 1Y9MA 4N2RA 4KCBA 3WMZA 2AC1A 2YFTA 2EXJA 2OXBA 3AKIA 3AKGA 5AY9A 3C7HA 1GYDB 1W2TA 5FIXA 5FKCA 4FFIA 3BYKA 5A7VA 2ADDA 3LV4A 2QQVA 5AYDA 3TAWA 2EXHA 1ST8A 5A7VB 1YI7A 4U6BA 1PT2A 5JOWA 3OM6A 5GLOA 1OYGA 4O8NA 3K1UA 5FK7A 5FMCA 3C7FA 4N1IA 3QEEA 1GYEB 4FFHA 5AYEA 4AK7A 3R4ZA 4PVIA 4KCAA 3D5ZA 3AKHA 2ADEA 4U6DA 3OM5A 3D61A 3LIHA 4KC7A 5GLMA 3ZXLA 3ZXKA 1Y7BA 3LFIA 3WN1A 3BYLA 5GLPA 3WN2A 3CU9A 3OM2A 4KMIA 4O8PA 5FLWA 3VT2A 3AKFA 1TL2A 3OM7A 2YFRA 5FK8A 3WAUA 1YRZA 3D60A 3VT0A 4UDJA 2EXKA 3OM4A 5GLKA 5B6TA 2XQRA 4N2ZA 5A8CA 3VSZA 4FFGA 3U75A 3C7GA 2QQWA 3NQHA 3VT1A 4PVAA 3WN0A 2B4WA 5FMBA 3WATA 2YFSA 5GLLA 3BYNA 3WMYA 1UV4A 5AYCA 4ONZA 3BYJA 3WPVA 3UGFA 2X8TA 3LDRA 5B6SA 2X8FA 1VKDA 2AEZA 2AEYA 3SC7X 3LEMA 4COTA 4AK5A 3QC2A 5ANNA 5GLNA 3VSRA 3R67A 4O8OA 3WASA 1YIFA 4UDKE 3VSFA 1GYHA 3QZ4A 3LF7A 5FMDA 3WPUA 3LDKA 1WL7A 2X8SA
chains in the Genus database with same CATH topology
3PIGA 2QQUA 5JOYA 3C2UA 4NOVA 3P2NA 3R4YA 5GLQA 5A8DA 3KF3A 3QEFA 3C7OA 4MLGA 3U14A 5FKBA 1W18A 3ZXJA 3KF5A 3D5YA 3RWKX 5JOZA 4UDIA 4KC8A 4FFFA 4N4BA 3VSSA 1Y9GA 1UYPA 3LIGA 3KSTA 3QEDA 4D47A 3WPYA 4QQSA 3WPZA 2EXIA 3PIJA 5JOXA 1Y4WA 5GLRA 3UGGA 4UDKA 4AK6A 4UDGA 5C0PA 4EQVA 3C7EA 2VDTA 3UGHA 1Y9MA 4N2RA 4KCBA 3WMZA 2AC1A 2YFTA 2EXJA 2OXBA 3AKIA 3AKGA 5AY9A 3C7HA 1GYDB 1W2TA 5FIXA 5FKCA 4FFIA 3BYKA 5A7VA 2ADDA 3LV4A 2QQVA 5AYDA 3TAWA 2EXHA 1ST8A 5A7VB 1YI7A 4U6BA 1PT2A 5JOWA 3OM6A 5GLOA 1OYGA 4O8NA 3K1UA 5FK7A 5FMCA 3C7FA 4N1IA 3QEEA 1GYEB 4FFHA 5AYEA 4AK7A 3R4ZA 4PVIA 4KCAA 3D5ZA 3AKHA 2ADEA 4U6DA 3OM5A 3D61A 3LIHA 4KC7A 5GLMA 3ZXLA 3ZXKA 1Y7BA 3LFIA 3WN1A 3BYLA 5GLPA 3WN2A 3CU9A 3OM2A 4KMIA 4O8PA 5FLWA 3VT2A 3AKFA 3OM7A 2YFRA 5FK8A 3WAUA 1YRZA 3D60A 3VT0A 4UDJA 2EXKA 3OM4A 5GLKA 5B6TA 2XQRA 4N2ZA 5A8CA 3VSZA 4FFGA 3U75A 3C7GA 2QQWA 3NQHA 3VT1A 4PVAA 3WN0A 2B4WA 5FMBA 3WATA 2YFSA 5GLLA 3BYNA 3WMYA 1UV4A 5AYCA 4ONZA 3BYJA 3WPVA 3UGFA 2X8TA 3LDRA 5B6SA 2X8FA 1VKDA 2AEZA 2AEYA 3SC7X 3LEMA 4COTA 4AK5A 3QC2A 5ANNA 5GLNA 3VSRA 3R67A 4O8OA 3WASA 1YIFA 4UDKE 3VSFA 1GYHA 3QZ4A 3LF7A 5FMDA 3WPUA 3LDKA 1WL7A 2X8SA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PIG A;  2QQU A;  5JOY A;  3C2U A;  4NOV A;  3P2N A;  3R4Y A;  5GLQ A;  5A8D A;  3KF3 A;  3QEF A;  3C7O A;  4MLG A;  3U14 A;  5FKB A;  1W18 A;  3ZXJ A;  3KF5 A;  3D5Y A;  3RWK X;  5JOZ A;  4UDI A;  4KC8 A;  4FFF A;  4N4B A;  3VSS A;  1Y9G A;  1UYP A;  3LIG A;  3KST A;  3QED A;  4D47 A;  3WPY A;  4QQS A;  3WPZ A;  2EXI A;  3PIJ A;  5JOX A;  1Y4W A;  5GLR A;  3UGG A;  4UDK A;  4AK6 A;  4UDG A;  5C0P A;  4EQV A;  3C7E A;  2VDT A;  3UGH A;  1Y9M A;  4N2R A;  4KCB A;  3WMZ A;  2AC1 A;  2YFT A;  2EXJ A;  2OXB A;  3AKI A;  3AKG A;  5AY9 A;  3C7H A;  1GYD B;  1W2T A;  5FIX A;  5FKC A;  4FFI A;  3BYK A;  5A7V A;  2ADD A;  3LV4 A;  2QQV A;  5AYD A;  3TAW A;  2EXH A;  1ST8 A;  5A7V B;  1YI7 A;  4U6B A;  1PT2 A;  5JOW A;  3OM6 A;  5GLO A;  1OYG A;  4O8N A;  3K1U A;  5FK7 A;  5FMC A;  3C7F A;  4N1I A;  3QEE A;  1GYE B;  4FFH A;  5AYE A;  4AK7 A;  3R4Z A;  4PVI A;  4KCA A;  3D5Z A;  3AKH A;  2ADE A;  4U6D A;  3OM5 A;  3D61 A;  3LIH A;  4KC7 A;  5GLM A;  3ZXL A;  3ZXK A;  1Y7B A;  3LFI A;  3WN1 A;  3BYL A;  5GLP A;  3WN2 A;  3CU9 A;  3OM2 A;  4KMI A;  4O8P A;  5FLW A;  3VT2 A;  3AKF A;  3OM7 A;  2YFR A;  5FK8 A;  3WAU A;  1YRZ A;  3D60 A;  3VT0 A;  4UDJ A;  2EXK A;  3OM4 A;  5GLK A;  5B6T A;  2XQR A;  4N2Z A;  5A8C A;  3VSZ A;  4FFG A;  3U75 A;  3C7G A;  2QQW A;  3NQH A;  3VT1 A;  4PVA A;  3WN0 A;  2B4W A;  5FMB A;  3WAT A;  2YFS A;  5GLL A;  3BYN A;  3WMY A;  1UV4 A;  5AYC A;  4ONZ A;  3BYJ A;  3WPV A;  3UGF A;  2X8T A;  3LDR A;  5B6S A;  2X8F A;  1VKD A;  2AEZ A;  2AEY A;  3SC7 X;  3LEM A;  4COT A;  4AK5 A;  3QC2 A;  5ANN A;  5GLN A;  3VSR A;  3R67 A;  4O8O A;  3WAS A;  1YIF A;  4UDK E;  3VSF A;  1GYH A;  3QZ4 A;  3LF7 A;  5FMD A;  3WPU A;  3LDK A;  1WL7 A;  2X8S A; 
#chains in the Genus database with same CATH topology
 3PIG A;  2QQU A;  5JOY A;  3C2U A;  4NOV A;  3P2N A;  3R4Y A;  5GLQ A;  5A8D A;  3KF3 A;  3QEF A;  3C7O A;  4MLG A;  3U14 A;  5FKB A;  1W18 A;  3ZXJ A;  3KF5 A;  5C2M A;  3D5Y A;  3RWK X;  5JOZ A;  4UDI A;  4KC8 A;  4FFF A;  4N4B A;  3VSS A;  1Y9G A;  1UYP A;  3LIG A;  3KST A;  3QED A;  4D47 A;  3WPY A;  4QQS A;  3WPZ A;  2EXI A;  3PIJ A;  5JOX A;  1Y4W A;  5GLR A;  3UGG A;  4UDK A;  4AK6 A;  4UDG A;  5C0P A;  4EQV A;  3C7E A;  2VDT A;  3UGH A;  1Y9M A;  4N2R A;  4KCB A;  3WMZ A;  2AC1 A;  2YFT A;  2EXJ A;  2OXB A;  3AKI A;  3AKG A;  5AY9 A;  3C7H A;  1GYD B;  1W2T A;  5FIX A;  5FKC A;  4FFI A;  3BYK A;  5A7V A;  2ADD A;  3LV4 A;  2QQV A;  5AYD A;  3TAW A;  2EXH A;  1ST8 A;  5A7V B;  1YI7 A;  4U6B A;  1PT2 A;  5JOW A;  3OM6 A;  5GLO A;  1OYG A;  4O8N A;  3K1U A;  5FK7 A;  5FMC A;  3C7F A;  4N1I A;  3QEE A;  1GYE B;  4FFH A;  5AYE A;  4AK7 A;  3R4Z A;  4PVI A;  4KCA A;  3D5Z A;  3AKH A;  2ADE A;  4U6D A;  3OM5 A;  3D61 A;  3LIH A;  4KC7 A;  5GLM A;  3ZXL A;  3ZXK A;  1Y7B A;  3LFI A;  3WN1 A;  3BYL A;  5GLP A;  3WN2 A;  3CU9 A;  3OM2 A;  4KMI A;  4O8P A;  5FLW A;  3VT2 A;  3AKF A;  1TL2 A;  3OM7 A;  2YFR A;  5FK8 A;  3WAU A;  1YRZ A;  3D60 A;  3VT0 A;  4UDJ A;  2EXK A;  3OM4 A;  5GLK A;  5B6T A;  2XQR A;  4N2Z A;  5A8C A;  3VSZ A;  4FFG A;  3U75 A;  3C7G A;  2QQW A;  3NQH A;  3VT1 A;  4PVA A;  3WN0 A;  2B4W A;  5FMB A;  3WAT A;  2YFS A;  5GLL A;  3BYN A;  3WMY A;  1UV4 A;  5AYC A;  4ONZ A;  3BYJ A;  3WPV A;  3UGF A;  2X8T A;  3LDR A;  5B6S A;  2X8F A;  1VKD A;  2AEZ A;  2AEY A;  3SC7 X;  3LEM A;  4COT A;  4AK5 A;  3QC2 A;  5ANN A;  5GLN A;  3VSR A;  3R67 A;  4O8O A;  3WAS A;  1YIF A;  4UDK E;  3VSF A;  1GYH A;  3QZ4 A;  3LF7 A;  5FMD A;  3WPU A;  3LDK A;  1WL7 A;  2X8S A; 
#chains in the Genus database with same CATH homology
 3PIG A;  2QQU A;  5JOY A;  3C2U A;  4NOV A;  3P2N A;  3R4Y A;  5GLQ A;  5A8D A;  3KF3 A;  3QEF A;  3C7O A;  4MLG A;  3U14 A;  5FKB A;  1W18 A;  3ZXJ A;  3KF5 A;  3D5Y A;  3RWK X;  5JOZ A;  4UDI A;  4KC8 A;  4FFF A;  4N4B A;  3VSS A;  1Y9G A;  1UYP A;  3LIG A;  3KST A;  3QED A;  4D47 A;  3WPY A;  4QQS A;  3WPZ A;  2EXI A;  3PIJ A;  5JOX A;  1Y4W A;  5GLR A;  3UGG A;  4UDK A;  4AK6 A;  4UDG A;  5C0P A;  4EQV A;  3C7E A;  2VDT A;  3UGH A;  1Y9M A;  4N2R A;  4KCB A;  3WMZ A;  2AC1 A;  2YFT A;  2EXJ A;  2OXB A;  3AKI A;  3AKG A;  5AY9 A;  3C7H A;  1GYD B;  1W2T A;  5FIX A;  5FKC A;  4FFI A;  3BYK A;  5A7V A;  2ADD A;  3LV4 A;  2QQV A;  5AYD A;  3TAW A;  2EXH A;  1ST8 A;  5A7V B;  1YI7 A;  4U6B A;  1PT2 A;  5JOW A;  3OM6 A;  5GLO A;  1OYG A;  4O8N A;  3K1U A;  5FK7 A;  5FMC A;  3C7F A;  4N1I A;  3QEE A;  1GYE B;  4FFH A;  5AYE A;  4AK7 A;  3R4Z A;  4PVI A;  4KCA A;  3D5Z A;  3AKH A;  2ADE A;  4U6D A;  3OM5 A;  3D61 A;  3LIH A;  4KC7 A;  5GLM A;  3ZXL A;  3ZXK A;  1Y7B A;  3LFI A;  3WN1 A;  3BYL A;  5GLP A;  3WN2 A;  3CU9 A;  3OM2 A;  4KMI A;  4O8P A;  5FLW A;  3VT2 A;  3AKF A;  3OM7 A;  2YFR A;  5FK8 A;  3WAU A;  1YRZ A;  3D60 A;  3VT0 A;  4UDJ A;  2EXK A;  3OM4 A;  5GLK A;  5B6T A;  2XQR A;  4N2Z A;  5A8C A;  3VSZ A;  4FFG A;  3U75 A;  3C7G A;  2QQW A;  3NQH A;  3VT1 A;  4PVA A;  3WN0 A;  2B4W A;  5FMB A;  3WAT A;  2YFS A;  5GLL A;  3BYN A;  3WMY A;  1UV4 A;  5AYC A;  4ONZ A;  3BYJ A;  3WPV A;  3UGF A;  2X8T A;  3LDR A;  5B6S A;  2X8F A;  1VKD A;  2AEZ A;  2AEY A;  3SC7 X;  3LEM A;  4COT A;  4AK5 A;  3QC2 A;  5ANN A;  5GLN A;  3VSR A;  3R67 A;  4O8O A;  3WAS A;  1YIF A;  4UDK E;  3VSF A;  1GYH A;  3QZ4 A;  3LF7 A;  5FMD A;  3WPU A;  3LDK A;  1WL7 A;  2X8S A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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