4KN7E

X-ray crystal structure of the escherichia coli rna polymerase in complex with benzoxazinorifamycin-2c
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
90
structure length
90
Chain Sequence
ARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILDVRERQEQQEQEAAELQAVTAIAEGRR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase/antibiotic
molecule keywords DNA-directed RNA polymerase subunit alpha
publication title X-ray Crystal Structures of the Escherichia coli RNA Polymerase in Complex with Benzoxazinorifamycins.
pubmed doi rcsb
source organism Escherichia coli
total genus 23
structure length 90
sequence length 90
chains with identical sequence J
ec nomenclature ec 2.7.7.6: DNA-directed RNA polymerase.
pdb deposition date 2013-05-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF01192 RNA_pol_Rpb6 RNA polymerase Rpb6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.940.10 Alpha Beta Alpha-Beta Complex Eukaryotic RPB6 RNA polymerase subunit Eukaryotic RPB6 RNA polymerase subunit 4kn7E00
4A3LF 4OIRE 4A3CF 4BXXF 1YNNK 1ZYRE 3I4MF 2A68E 5M3FF 2JA5F 3M3YF 2E2JF 3HOWF 5M3MF 5TMFE 4G7ZE 2PPBE 3GTMF 4YG2E 5E18E 5IYDF 3GTGF 2O5IE 3S17F 3GTKF 4JK1E 1SMYE 2NVYF 3I4NF 4Q4ZE 4C2MF 3S15F 2WAQK 1TWGF 3M4OF 2NVQF 1TWAF 2B63F 2NVXF 1QKLA 5C4XF 4C3JF 4OINE 4KN4E 1I6VE 5C3EF 3GTQF 4XSXE 3PO2F 3GTLF 5M5XF 2BE5E 2A6HE 2CW0E 2JA8F 5E17E 4BY1F 5FLMF 5FJ8F 1TWFF 3K7AF 4YFKE 4XSZE 5D4DE 4MEXE 2E2HF 3GTPF 3RZOF 4GZYE 5C4JF 3WODE 2YU9F 1Y1WF 3HOUF 3HOZF 4KN7E 3FKIF 2JA7F 4LK1E 4X6AF 2Y0SI 1I6HF 4LK0E 5IP9F 4A3EF 1Y1VF 1HQME 1YNJK 2R93F 4OIOE 3S1NF 4A3KF 4KMUE 4BBSF 2A69E 3GTOF 3S14F 3S2HF 2E2IF 4ZH4E 2PMZK 4A3MF 4Y7NF 3DXJE 3HOVF 1SFOF 5C44F 3CQZF 4AYBK 2R92F 4OIPE 3S1MF 5M5YF 4A3BF 4G7OE 4MQ9E 2O5JE 4Y52F 4A3IF 3S1QF 4Q5SE 2WB1I 4YFXE 1IW7E 4C3HF 1I50F 4OIQE 2NVTF 4A3GF 3S2DF 4LJZE 4MEYE 3S16F 1TWHF 4XLNE 1WCMF 3HKZK 2R7ZF 4A3DF 3RZDF 3H3VG 3GTJF 3S1RF 5D4EE 4YFNE 5IP7F 4G7HE 2VUMF 3HOYF 4A3FF 5IYBF 3H0GF 3EQLE 5TMCE 3HOXF 1R9TF 3PO3F 1TWCF 4LLGE 4XLPE 5BYHE 4BY7F 4A3JF 1K83F 5IPLE 4A93F 4BBRF 5M5WF 1I3QF 5IYCF 2JA6F 4C3IF 5D4CE 2A6EE
chains in the Genus database with same CATH superfamily
4A3LF 4OIRE 4A3CF 3GTQE 5C3EE 3PO2E 4BXXF 3GTLE 1YNNK 5M5XE 3HOWE 1ZYRE 2JA8E 3I4MF 2A68E 5FLME 5M3FF 2JA5F 2WB1H 5FJ8E 3M3YF 1TWFE 3GTPE 2E2HE 2E2JF 3RZOE 3HOWF 5M3MF 5C4JE 5TMFE 1Y1WE 2YU9E 3HOUE 3HOZE 2KRXA 3FKIE 4G7ZE 2PPBE 2JA7E 4X6AE 3GTMF 3S17E 4YG2E 5E18E 5IYDF 1I6HE 3GTGF 5IP9E 4A3EE 2O5IE 1Y1VE 2R93E 3S15E 3S1NE 4A3KE 4BBSE 3S17F 3GTKF 1TWAE 4JK1E 1SMYE 3S14E 2E2IE 2NVYF 3I4NF 4A3ME 4Q4ZE 4C2MF 4Y7NE 3S15F 2WAQK 1TWGF 3M4OF 2NVQF 1SFOE 1TWAF 5C44E 3CQZE 4QIWH 2NVXF 1QKLA 2B63F 2R92E 5C4XF 4C3JF 5M5YE 4BY1E 4A3BE 4OINE 4KN4E 1I6VE 3K7AE 5C3EF 4XSXE 4A3IE 3GTLF 3GTQF 3S1QE 3PO2F 5M5XF 2BE5E 2A6HE 2CW0E 2WAQH 2JA8F 4BY1F 5FLMF 1I50E 5E17E 5FJ8F 1TWFF 3K7AF 4YFKE 2PMZH 4XSZE 5D4DE 4MEXE 2E2HF 2NVTE 3GTPF 3RZOF 4A3GE 4GZYE 5C4JF 3WODE 3S2DE 2YU9F 1Y1WF 3HOUF 3HOZF 4QIWK 3S16E 1TWHE 4KN7E 3FKIF 1WCME 4LK1E 2JA7F 4X6AF 3GTOE 4A3DE 2Y0SI 1I6HF 3RZDE 3S2HE 3S1RE 4LK0E 5IP9F 4A3EF 1Y1VF 1HQME 1YNJK 1DZFA 2R93F 4OIOE 3S1NF 4A3KF 4KMUE 5IP7E 2A69E 3GTOF 3HOVE 4BBSF 2VUME 3S14F 3S2HF 4A3FE 4ZH4E 5IYBE 3H0GE 2PMZK 2E2IF 4A3MF 3S1ME 1R9TE 3PO3E 4Y7NF 1TWCE 3DXJE 4Y52E 3HOVF 1SFOF 5C44F 3CQZF 4A3JE 4AYBK 1K83E 2R92F 4OIPE 4C3HE 3S1MF 5M5YF 4BBRE 5IYCE 1I3QE 5M5WE 4A3BF 4G7OE 4MQ9E 2O5JE 4Y52F 4A3IF 2JA6E 4C3IE 4Q5SE 3S1QF 2WB1I 4YFXE 4A3LE 1IW7E 4C3HF 4A3CE 1I50F 4BXXE 4OIQE 1EIKA 4AYBH 3I4ME 5M3FE 2NVTF 2JA5E 2R7ZE 4A3GF 3M3YE 3S2DF 4LJZE 3GTJE 4MEYE 2E2JE 3S16F 1TWHF 5M3ME 4XLNE 1WCMF 3HKZK 2R7ZF 4A3DF 3HOYE 3RZDF 3H3VG 3GTJF 3S1RF 3HOXE 5D4EE 4YFNE 3GTME 3H3VF 5IYDE 3GTGE 5IP7F 4G7HE 2VUMF 3HOYF 4BY7E 2Y0SH 4A3FF 5IYBF 3H0GF 3EQLE 5TMCE 3HOXF 4A93E 3HKZH 1R9TF 3GTKE 3PO3F 1TWCF 4LLGE 2NVYE 4XLPE 3I4NE 5BYHE 4BY7F 4A3JF 1K83F 4C2ME 5IPLE 1TWGE 3M4OE 4A93F 2NVQE 4BBRF 5M5WF 1I3QF 5IYCF 2NVXE 2B63E 5C4XE 4C3JE 2JA6F 4C3IF 5D4CE 2A6EE
chains in the Genus database with same CATH topology
4A3LF 4OIRE 4A3CF 4BXXF 1YNNK 1ZYRE 3I4MF 2A68E 5M3FF 2JA5F 3M3YF 2E2JF 3HOWF 5M3MF 5TMFE 2KRXA 4G7ZE 2PPBE 3GTMF 4YG2E 5E18E 5IYDF 3GTGF 2O5IE 3S17F 3GTKF 4JK1E 1SMYE 2NVYF 3I4NF 4Q4ZE 4C2MF 3S15F 2WAQK 1TWGF 3M4OF 2NVQF 1TWAF 2B63F 2NVXF 1QKLA 5C4XF 4C3JF 4OINE 4KN4E 1I6VE 5C3EF 3GTQF 4XSXE 3PO2F 3GTLF 5M5XF 2BE5E 2A6HE 2CW0E 2JA8F 5E17E 4BY1F 5FLMF 5FJ8F 1TWFF 3K7AF 4YFKE 4XSZE 5D4DE 4MEXE 2E2HF 3GTPF 3RZOF 4GZYE 5C4JF 3WODE 2YU9F 1Y1WF 3HOUF 3HOZF 4QIWK 4KN7E 3FKIF 2JA7F 4LK1E 4X6AF 2Y0SI 1I6HF 4LK0E 5IP9F 4A3EF 1Y1VF 1HQME 1YNJK 2R93F 4OIOE 3S1NF 4A3KF 4KMUE 4BBSF 2A69E 3GTOF 3S14F 3S2HF 2E2IF 4ZH4E 2PMZK 4A3MF 4Y7NF 3DXJE 3HOVF 1SFOF 5C44F 3CQZF 4AYBK 2R92F 4OIPE 3S1MF 5M5YF 4A3BF 4G7OE 4MQ9E 2O5JE 4Y52F 4A3IF 3S1QF 4Q5SE 2WB1I 4YFXE 1IW7E 4C3HF 1I50F 4OIQE 2NVTF 4A3GF 3S2DF 4LJZE 4MEYE 3S16F 1TWHF 4XLNE 1WCMF 3HKZK 2R7ZF 4A3DF 3RZDF 3H3VG 3GTJF 3S1RF 5D4EE 4YFNE 5IP7F 4G7HE 2VUMF 3HOYF 4A3FF 5IYBF 3H0GF 3EQLE 5TMCE 3HOXF 1R9TF 3PO3F 1TWCF 4LLGE 4XLPE 5BYHE 4BY7F 4A3JF 1K83F 5IPLE 4A93F 4BBRF 5M5WF 1I3QF 5IYCF 2JA6F 4C3IF 5D4CE 2A6EE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4A3L F;  4OIR E;  4A3C F;  4BXX F;  1YNN K;  1ZYR E;  3I4M F;  2A68 E;  5M3F F;  2JA5 F;  3M3Y F;  2E2J F;  3HOW F;  5M3M F;  5TMF E;  4G7Z E;  2PPB E;  3GTM F;  4YG2 E;  5E18 E;  5IYD F;  3GTG F;  2O5I E;  3S17 F;  3GTK F;  4JK1 E;  1SMY E;  2NVY F;  3I4N F;  4Q4Z E;  4C2M F;  3S15 F;  2WAQ K;  1TWG F;  3M4O F;  2NVQ F;  1TWA F;  2B63 F;  2NVX F;  1QKL A;  5C4X F;  4C3J F;  4OIN E;  4KN4 E;  1I6V E;  5C3E F;  3GTQ F;  4XSX E;  3PO2 F;  3GTL F;  5M5X F;  2BE5 E;  2A6H E;  2CW0 E;  2JA8 F;  5E17 E;  4BY1 F;  5FLM F;  5FJ8 F;  1TWF F;  3K7A F;  4YFK E;  4XSZ E;  5D4D E;  4MEX E;  2E2H F;  3GTP F;  3RZO F;  4GZY E;  5C4J F;  3WOD E;  2YU9 F;  1Y1W F;  3HOU F;  3HOZ F;  4KN7 E;  3FKI F;  2JA7 F;  4LK1 E;  4X6A F;  2Y0S I;  1I6H F;  4LK0 E;  5IP9 F;  4A3E F;  1Y1V F;  1HQM E;  1YNJ K;  2R93 F;  4OIO E;  3S1N F;  4A3K F;  4KMU E;  4BBS F;  2A69 E;  3GTO F;  3S14 F;  3S2H F;  2E2I F;  4ZH4 E;  2PMZ K;  4A3M F;  4Y7N F;  3DXJ E;  3HOV F;  1SFO F;  5C44 F;  3CQZ F;  4AYB K;  2R92 F;  4OIP E;  3S1M F;  5M5Y F;  4A3B F;  4G7O E;  4MQ9 E;  2O5J E;  4Y52 F;  4A3I F;  3S1Q F;  4Q5S E;  2WB1 I;  4YFX E;  1IW7 E;  4C3H F;  1I50 F;  4OIQ E;  2NVT F;  4A3G F;  3S2D F;  4LJZ E;  4MEY E;  3S16 F;  1TWH F;  4XLN E;  1WCM F;  3HKZ K;  2R7Z F;  4A3D F;  3RZD F;  3H3V G;  3GTJ F;  3S1R F;  5D4E E;  4YFN E;  5IP7 F;  4G7H E;  2VUM F;  3HOY F;  4A3F F;  5IYB F;  3H0G F;  3EQL E;  5TMC E;  3HOX F;  1R9T F;  3PO3 F;  1TWC F;  4LLG E;  4XLP E;  5BYH E;  4BY7 F;  4A3J F;  1K83 F;  5IPL E;  4A93 F;  4BBR F;  5M5W F;  1I3Q F;  5IYC F;  2JA6 F;  4C3I F;  5D4C E;  2A6E E; 
#chains in the Genus database with same CATH topology
 4A3L F;  4OIR E;  4A3C F;  3GTQ E;  5C3E E;  3PO2 E;  4BXX F;  3GTL E;  1YNN K;  5M5X E;  3HOW E;  1ZYR E;  2JA8 E;  3I4M F;  2A68 E;  5FLM E;  5M3F F;  2JA5 F;  2WB1 H;  5FJ8 E;  3M3Y F;  1TWF E;  3GTP E;  2E2H E;  2E2J F;  3RZO E;  3HOW F;  5M3M F;  5C4J E;  5TMF E;  1Y1W E;  2YU9 E;  3HOU E;  3HOZ E;  2KRX A;  3FKI E;  4G7Z E;  2PPB E;  2JA7 E;  4X6A E;  3GTM F;  3S17 E;  4YG2 E;  5E18 E;  5IYD F;  1I6H E;  3GTG F;  5IP9 E;  4A3E E;  2O5I E;  1Y1V E;  2R93 E;  3S15 E;  3S1N E;  4A3K E;  4BBS E;  3S17 F;  3GTK F;  1TWA E;  4JK1 E;  1SMY E;  3S14 E;  2E2I E;  2NVY F;  3I4N F;  4A3M E;  4Q4Z E;  4C2M F;  4Y7N E;  3S15 F;  2WAQ K;  1TWG F;  3M4O F;  2NVQ F;  1SFO E;  1TWA F;  5C44 E;  3CQZ E;  4QIW H;  2NVX F;  1QKL A;  2B63 F;  2R92 E;  5C4X F;  4C3J F;  5M5Y E;  4BY1 E;  4A3B E;  4OIN E;  4KN4 E;  1I6V E;  3K7A E;  5C3E F;  4XSX E;  4A3I E;  3GTL F;  3GTQ F;  3S1Q E;  3PO2 F;  5M5X F;  2BE5 E;  2A6H E;  2CW0 E;  2WAQ H;  2JA8 F;  4BY1 F;  5FLM F;  1I50 E;  5E17 E;  5FJ8 F;  1TWF F;  3K7A F;  4YFK E;  2PMZ H;  4XSZ E;  5D4D E;  4MEX E;  2E2H F;  2NVT E;  3GTP F;  3RZO F;  4A3G E;  4GZY E;  5C4J F;  3WOD E;  3S2D E;  2YU9 F;  1Y1W F;  3HOU F;  3HOZ F;  4QIW K;  3S16 E;  1TWH E;  4KN7 E;  3FKI F;  1WCM E;  4LK1 E;  2JA7 F;  4X6A F;  3GTO E;  4A3D E;  2Y0S I;  1I6H F;  3RZD E;  3S2H E;  3S1R E;  4LK0 E;  5IP9 F;  4A3E F;  1Y1V F;  1HQM E;  1YNJ K;  1DZF A;  2R93 F;  4OIO E;  3S1N F;  4A3K F;  4KMU E;  5IP7 E;  2A69 E;  3GTO F;  3HOV E;  4BBS F;  2VUM E;  3S14 F;  3S2H F;  4A3F E;  4ZH4 E;  5IYB E;  3H0G E;  2PMZ K;  2E2I F;  4A3M F;  3S1M E;  1R9T E;  3PO3 E;  4Y7N F;  1TWC E;  3DXJ E;  4Y52 E;  3HOV F;  1SFO F;  5C44 F;  3CQZ F;  4A3J E;  4AYB K;  1K83 E;  2R92 F;  4OIP E;  4C3H E;  3S1M F;  5M5Y F;  4BBR E;  5IYC E;  1I3Q E;  5M5W E;  4A3B F;  4G7O E;  4MQ9 E;  2O5J E;  4Y52 F;  4A3I F;  2JA6 E;  4C3I E;  4Q5S E;  3S1Q F;  2WB1 I;  4YFX E;  4A3L E;  1IW7 E;  4C3H F;  4A3C E;  1I50 F;  4BXX E;  4OIQ E;  1EIK A;  4AYB H;  3I4M E;  5M3F E;  2NVT F;  2JA5 E;  2R7Z E;  4A3G F;  3M3Y E;  3S2D F;  4LJZ E;  3GTJ E;  4MEY E;  2E2J E;  3S16 F;  1TWH F;  5M3M E;  4XLN E;  1WCM F;  3HKZ K;  2R7Z F;  4A3D F;  3HOY E;  3RZD F;  3H3V G;  3GTJ F;  3S1R F;  3HOX E;  5D4E E;  4YFN E;  3GTM E;  3H3V F;  5IYD E;  3GTG E;  5IP7 F;  4G7H E;  2VUM F;  3HOY F;  4BY7 E;  2Y0S H;  4A3F F;  5IYB F;  3H0G F;  3EQL E;  5TMC E;  3HOX F;  4A93 E;  3HKZ H;  1R9T F;  3GTK E;  3PO3 F;  1TWC F;  4LLG E;  2NVY E;  4XLP E;  3I4N E;  5BYH E;  4BY7 F;  4A3J F;  1K83 F;  4C2M E;  5IPL E;  1TWG E;  3M4O E;  4A93 F;  2NVQ E;  4BBR F;  5M5W F;  1I3Q F;  5IYC F;  2NVX E;  2B63 E;  5C4X E;  4C3J E;  2JA6 F;  4C3I F;  5D4C E;  2A6E E; 
#chains in the Genus database with same CATH homology
 4A3L F;  4OIR E;  4A3C F;  4BXX F;  1YNN K;  1ZYR E;  3I4M F;  2A68 E;  5M3F F;  2JA5 F;  3M3Y F;  2E2J F;  3HOW F;  5M3M F;  5TMF E;  2KRX A;  4G7Z E;  2PPB E;  3GTM F;  4YG2 E;  5E18 E;  5IYD F;  3GTG F;  2O5I E;  3S17 F;  3GTK F;  4JK1 E;  1SMY E;  2NVY F;  3I4N F;  4Q4Z E;  4C2M F;  3S15 F;  2WAQ K;  1TWG F;  3M4O F;  2NVQ F;  1TWA F;  2B63 F;  2NVX F;  1QKL A;  5C4X F;  4C3J F;  4OIN E;  4KN4 E;  1I6V E;  5C3E F;  3GTQ F;  4XSX E;  3PO2 F;  3GTL F;  5M5X F;  2BE5 E;  2A6H E;  2CW0 E;  2JA8 F;  5E17 E;  4BY1 F;  5FLM F;  5FJ8 F;  1TWF F;  3K7A F;  4YFK E;  4XSZ E;  5D4D E;  4MEX E;  2E2H F;  3GTP F;  3RZO F;  4GZY E;  5C4J F;  3WOD E;  2YU9 F;  1Y1W F;  3HOU F;  3HOZ F;  4QIW K;  4KN7 E;  3FKI F;  2JA7 F;  4LK1 E;  4X6A F;  2Y0S I;  1I6H F;  4LK0 E;  5IP9 F;  4A3E F;  1Y1V F;  1HQM E;  1YNJ K;  2R93 F;  4OIO E;  3S1N F;  4A3K F;  4KMU E;  4BBS F;  2A69 E;  3GTO F;  3S14 F;  3S2H F;  2E2I F;  4ZH4 E;  2PMZ K;  4A3M F;  4Y7N F;  3DXJ E;  3HOV F;  1SFO F;  5C44 F;  3CQZ F;  4AYB K;  2R92 F;  4OIP E;  3S1M F;  5M5Y F;  4A3B F;  4G7O E;  4MQ9 E;  2O5J E;  4Y52 F;  4A3I F;  3S1Q F;  4Q5S E;  2WB1 I;  4YFX E;  1IW7 E;  4C3H F;  1I50 F;  4OIQ E;  2NVT F;  4A3G F;  3S2D F;  4LJZ E;  4MEY E;  3S16 F;  1TWH F;  4XLN E;  1WCM F;  3HKZ K;  2R7Z F;  4A3D F;  3RZD F;  3H3V G;  3GTJ F;  3S1R F;  5D4E E;  4YFN E;  5IP7 F;  4G7H E;  2VUM F;  3HOY F;  4A3F F;  5IYB F;  3H0G F;  3EQL E;  5TMC E;  3HOX F;  1R9T F;  3PO3 F;  1TWC F;  4LLG E;  4XLP E;  5BYH E;  4BY7 F;  4A3J F;  1K83 F;  5IPL E;  4A93 F;  4BBR F;  5M5W F;  1I3Q F;  5IYC F;  2JA6 F;  4C3I F;  5D4C E;  2A6E E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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