4KNKA

Crystal structure of staphylococcus aureus hydrolase amia
Total Genus 74
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
74
sequence length
206
structure length
206
Chain Sequence
TSLPKYKPQVNSSINDYICKNNLKAPKIEEDYTSYFPKYAYRNGVGRPEGIVVHDTANDRSTINGEISYMKNNYQNAFVHAFVDGDRIIETAPTDYLSWGVGAVGNPRFINVEIVHTHDYASFARSMNNYADYAATQLQYYGLKPDSAEYDGNGTVWTHYAVSKYLGGTDHADPHGYLRSHNYSYDQLYDLINEKYLIKMGKVAPW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords Bifunctional autolysin
publication title Structure-function analysis of Staphylococcus aureus amidase reveals the determinants of peptidoglycan recognition and cleavage.
pubmed doi rcsb
source organism Staphylococcus aureus subsp. aureus
total genus 74
structure length 206
sequence length 206
chains with identical sequence B
ec nomenclature ec 3.2.1.96: Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase.
pdb deposition date 2013-05-10
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.80.10 Alpha Beta 3-Layer(aba) Sandwich Lysozyme-like Peptidoglycan recognition protein-like 4knkA00
2XZ4A 4BXEA 3HMBA 4FNNA 2L47A 2Z9NA 4BPAA 1SK3A 2WKXA 2F2LX 1AROL 3NG4A 4BXJA 3RDRA 2APHA 1TWQA 2Y2CA 2R90A 3USXA 2Y2DA 1LBAA 2RKQA 3T2VA 2F2LA 3LATA 1YB0A 2BH7A 3UILA 4Q9EA 2Y28A 4GF9A 4ORVA 3NNOA 4ZXMA 3EP1A 5E0BA 3T39A 3RT4A 4BJ4A 4IVVA 1SK4A 4OUGA 3NW3A 2Y2BA 3QS0A 5DWFA 3O4KA 1Z6IA 3D2ZA 4KNKA 3QJ1A 3CXAA 4Q8SA 3CG9A 1SXRA 4BXDA 4OPPA 1OHTA 3UMLA 2AR3A 3CORA 2EAVA 1S2JA 2XZ8A 3QV4A 3OGXA 4X36A 2CB3A 4OLSA 3D2YA 2Y2EA 4BOLA 3C2XA 5E0AA 1YCKA 1J3GA 2EAXA 4KNLA 5CTVA 4Z8IA 3TRUA 3UMQA 2R2KA
chains in the Genus database with same CATH superfamily
2XZ4A 4BXEA 3HMBA 4FNNA 2L47A 2Z9NA 4BPAA 1SK3A 2WKXA 2F2LX 1AROL 3NG4A 4BXJA 3RDRA 2APHA 1TWQA 2Y2CA 2R90A 3USXA 2Y2DA 1LBAA 2RKQA 3T2VA 2F2LA 3LATA 1YB0A 2BH7A 3UILA 4Q9EA 2Y28A 4GF9A 4ORVA 3NNOA 4ZXMA 3EP1A 5E0BA 3T39A 3RT4A 4BJ4A 4IVVA 1SK4A 4OUGA 3NW3A 2Y2BA 3QS0A 5DWFA 3O4KA 1Z6IA 3D2ZA 4KNKA 3QJ1A 3CXAA 4Q8SA 3CG9A 1SXRA 4BXDA 4OPPA 1OHTA 3UMLA 2AR3A 3CORA 2EAVA 1S2JA 2XZ8A 3QV4A 3OGXA 4X36A 2CB3A 4OLSA 3D2YA 2Y2EA 4BOLA 3C2XA 5E0AA 1YCKA 1J3GA 2EAXA 4KNLA 5CTVA 4Z8IA 3TRUA 3UMQA 2R2KA
chains in the Genus database with same CATH topology
2XZ4A 4BXEA 3HMBA 4FNNA 2L47A 2Z9NA 4BPAA 1SK3A 2WKXA 2F2LX 1AROL 3NG4A 4BXJA 3RDRA 2APHA 1TWQA 2Y2CA 2R90A 3USXA 2Y2DA 1LBAA 2RKQA 3T2VA 2F2LA 3LATA 1YB0A 2BH7A 3UILA 4Q9EA 2Y28A 4GF9A 4ORVA 3NNOA 4ZXMA 3EP1A 5E0BA 3T39A 3RT4A 4BJ4A 4IVVA 1SK4A 4OUGA 3NW3A 2Y2BA 3QS0A 5DWFA 3O4KA 1Z6IA 3D2ZA 4KNKA 3QJ1A 3CXAA 4Q8SA 3CG9A 1SXRA 4BXDA 4OPPA 1OHTA 3UMLA 2AR3A 3CORA 2EAVA 1S2JA 2XZ8A 3QV4A 3OGXA 4X36A 2CB3A 4OLSA 3D2YA 2Y2EA 4BOLA 3C2XA 5E0AA 1YCKA 1J3GA 2EAXA 4KNLA 5CTVA 4Z8IA 3TRUA 3UMQA 2R2KA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XZ4 A;  4BXE A;  3HMB A;  4FNN A;  2L47 A;  2Z9N A;  4BPA A;  1SK3 A;  2WKX A;  2F2L X;  1ARO L;  3NG4 A;  4BXJ A;  3RDR A;  2APH A;  1TWQ A;  2Y2C A;  2R90 A;  3USX A;  2Y2D A;  1LBA A;  2RKQ A;  3T2V A;  2F2L A;  3LAT A;  1YB0 A;  2BH7 A;  3UIL A;  4Q9E A;  2Y28 A;  4GF9 A;  4ORV A;  3NNO A;  4ZXM A;  3EP1 A;  5E0B A;  3T39 A;  3RT4 A;  4BJ4 A;  4IVV A;  1SK4 A;  4OUG A;  3NW3 A;  2Y2B A;  3QS0 A;  5DWF A;  3O4K A;  1Z6I A;  3D2Z A;  4KNK A;  3QJ1 A;  3CXA A;  4Q8S A;  3CG9 A;  1SXR A;  4BXD A;  4OPP A;  1OHT A;  3UML A;  2AR3 A;  3COR A;  2EAV A;  1S2J A;  2XZ8 A;  3QV4 A;  3OGX A;  4X36 A;  2CB3 A;  4OLS A;  3D2Y A;  2Y2E A;  4BOL A;  3C2X A;  5E0A A;  1YCK A;  1J3G A;  2EAX A;  4KNL A;  5CTV A;  4Z8I A;  3TRU A;  3UMQ A;  2R2K A; 
#chains in the Genus database with same CATH topology
 2XZ4 A;  4BXE A;  3HMB A;  4FNN A;  2L47 A;  2Z9N A;  4BPA A;  1SK3 A;  2WKX A;  2F2L X;  1ARO L;  3NG4 A;  4BXJ A;  3RDR A;  2APH A;  1TWQ A;  2Y2C A;  2R90 A;  3USX A;  2Y2D A;  1LBA A;  2RKQ A;  3T2V A;  2F2L A;  3LAT A;  1YB0 A;  2BH7 A;  3UIL A;  4Q9E A;  2Y28 A;  4GF9 A;  4ORV A;  3NNO A;  4ZXM A;  3EP1 A;  5E0B A;  3T39 A;  3RT4 A;  4BJ4 A;  4IVV A;  1SK4 A;  4OUG A;  3NW3 A;  2Y2B A;  3QS0 A;  5DWF A;  3O4K A;  1Z6I A;  3D2Z A;  4KNK A;  3QJ1 A;  3CXA A;  4Q8S A;  3CG9 A;  1SXR A;  4BXD A;  4OPP A;  1OHT A;  3UML A;  2AR3 A;  3COR A;  2EAV A;  1S2J A;  2XZ8 A;  3QV4 A;  3OGX A;  4X36 A;  2CB3 A;  4OLS A;  3D2Y A;  2Y2E A;  4BOL A;  3C2X A;  5E0A A;  1YCK A;  1J3G A;  2EAX A;  4KNL A;  5CTV A;  4Z8I A;  3TRU A;  3UMQ A;  2R2K A; 
#chains in the Genus database with same CATH homology
 2XZ4 A;  4BXE A;  3HMB A;  4FNN A;  2L47 A;  2Z9N A;  4BPA A;  1SK3 A;  2WKX A;  2F2L X;  1ARO L;  3NG4 A;  4BXJ A;  3RDR A;  2APH A;  1TWQ A;  2Y2C A;  2R90 A;  3USX A;  2Y2D A;  1LBA A;  2RKQ A;  3T2V A;  2F2L A;  3LAT A;  1YB0 A;  2BH7 A;  3UIL A;  4Q9E A;  2Y28 A;  4GF9 A;  4ORV A;  3NNO A;  4ZXM A;  3EP1 A;  5E0B A;  3T39 A;  3RT4 A;  4BJ4 A;  4IVV A;  1SK4 A;  4OUG A;  3NW3 A;  2Y2B A;  3QS0 A;  5DWF A;  3O4K A;  1Z6I A;  3D2Z A;  4KNK A;  3QJ1 A;  3CXA A;  4Q8S A;  3CG9 A;  1SXR A;  4BXD A;  4OPP A;  1OHT A;  3UML A;  2AR3 A;  3COR A;  2EAV A;  1S2J A;  2XZ8 A;  3QV4 A;  3OGX A;  4X36 A;  2CB3 A;  4OLS A;  3D2Y A;  2Y2E A;  4BOL A;  3C2X A;  5E0A A;  1YCK A;  1J3G A;  2EAX A;  4KNL A;  5CTV A;  4Z8I A;  3TRU A;  3UMQ A;  2R2K A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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