4KOOA

Crystal structure of why1 from arabidopsis thaliana
Total Genus 31
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
176
structure length
176
Chain Sequence
LPARFYVGHSIYKGKAALTVDPRAPEFVALDSGAFKLSKDGFLLLQFAPSAGVRQYDWSKKQVFSLSVTEIGTLVSLGPRESCEFFHDPFKGKSDEGKVRKVLKVEPLPDGSGHFFNLSVQNKLVNVDESIYIPITRAEFAVLISAFNFVLPYLIGWHAFANSIKAAALEHHHHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna binding protein
molecule keywords Single-stranded DNA-binding protein WHY1, chloroplastic
publication title A family portrait: structural comparison of the Whirly proteins from Arabidopsis thaliana and Solanum tuberosum.
pubmed doi rcsb
source organism Arabidopsis thaliana
total genus 31
structure length 176
sequence length 176
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2013-05-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08536 Whirly Whirly transcription factor
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.31.10 Mainly Beta Roll Transcriptional Co-activator pc4; Chain A Transcriptional Coactivator Pc4; Chain A 4kooA00
4BG7A 4AGHA 1L3AA 3N1LA 3R9ZA 2C62A 4KOQA 4BHMA 4USGA 1PCFA 3RA0A 3N1HA 2NVNA 4KOOA 2PHEA 3R9YA 3N1KA 3N1IA 4KOPA 2IT9A 3N1JA
chains in the Genus database with same CATH superfamily
4BOBA 4BG7A 4AGHA 1L3AA 3N1LA 2GIAA 3R9ZA 4BXMA 2GJEA 2C62A 4KOQA 2GIDA 2M4FA 4BHMA 4J38A 4USGA 3CM1A 4BF3A 1PCFA 3RA0A 4BODA 3N1HA 3MTVA 2NVNA 4KOOA 2PHEA 2GIAB 5FGPA 3R9YA 3OBHA 3N1KA 3N1IA 3K44A 2GIDB 4KOPA 2GJED 2IT9A 3N1JA
chains in the Genus database with same CATH topology
4BG7A 4AGHA 1L3AA 3N1LA 3R9ZA 2C62A 4KOQA 4BHMA 4USGA 1PCFA 3RA0A 3N1HA 2NVNA 4KOOA 2PHEA 3R9YA 3N1KA 3N1IA 4KOPA 2IT9A 3N1JA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4BG7 A;  4AGH A;  1L3A A;  3N1L A;  3R9Z A;  2C62 A;  4KOQ A;  4BHM A;  4USG A;  1PCF A;  3RA0 A;  3N1H A;  2NVN A;  4KOO A;  2PHE A;  3R9Y A;  3N1K A;  3N1I A;  4KOP A;  2IT9 A;  3N1J A; 
#chains in the Genus database with same CATH topology
 4BOB A;  4BG7 A;  4AGH A;  1L3A A;  3N1L A;  2GIA A;  3R9Z A;  4BXM A;  2GJE A;  2C62 A;  4KOQ A;  2GID A;  2M4F A;  4BHM A;  4J38 A;  4USG A;  3CM1 A;  4BF3 A;  1PCF A;  3RA0 A;  4BOD A;  3N1H A;  3MTV A;  2NVN A;  4KOO A;  2PHE A;  2GIA B;  5FGP A;  3R9Y A;  3OBH A;  3N1K A;  3N1I A;  3K44 A;  2GID B;  4KOP A;  2GJE D;  2IT9 A;  3N1J A; 
#chains in the Genus database with same CATH homology
 4BG7 A;  4AGH A;  1L3A A;  3N1L A;  3R9Z A;  2C62 A;  4KOQ A;  4BHM A;  4USG A;  1PCF A;  3RA0 A;  3N1H A;  2NVN A;  4KOO A;  2PHE A;  3R9Y A;  3N1K A;  3N1I A;  4KOP A;  2IT9 A;  3N1J A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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