4KPNA

Plant nucleoside hydrolase - ppnrh1 enzyme
Total Genus 98
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
98
sequence length
318
structure length
318
Chain Sequence
PPKKVIIDTDPGIDDAMAIFFALKSPELDVIALTTIYGNVRTPTATVNALHLLEFAGREDIPVSEGFRTSLRGELKERIADFVHGADGLGNTYPTLSDRKPIDTFAPDYLIQKVNEFPGEITIVALGPLTNLAAAVECDPTFAKKVGQIIILGGAFQVNGNVNPAAEANIYGDPEAADIIFTCGADILVVGINITHQVYWTGKDLEDLGRSDSKFGKYLYAASHFYATYHREAYDIDAIYLHDPATMVAAVDPSLMTYATGAVRVQKDGICKGLTLFNNSNKVWHDPTDWCGIPPVKVAVTVDRERVASLLKERLTAP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Nucleoside N-ribohydrolase 1
publication title Structure and Function of Nucleoside Hydrolases from Physcomitrella patens and Maize Catalyzing the Hydrolysis of Purine, Pyrimidine, and Cytokinin Ribosides.
pubmed doi rcsb
source organism Physcomitrella patens
total genus 98
structure length 318
sequence length 318
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature ec 3.2.2.1: Purine nucleosidase.
pdb deposition date 2013-05-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01156 IU_nuc_hydro Inosine-uridine preferring nucleoside hydrolase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.245.10 Alpha Beta Alpha-Beta Complex Inosine-uridine Nucleoside N-ribohydrolase; Chain A Ribonucleoside hydrolase-like 4kpnA00
4I75A 2C40A 4I74A 2FF1A 5TSQA 3EPXA 4I73A 2FF2A 1KICA 1HOZA 1R4FA 4I70A 4KPOA 1HP0A 2YHGA 4KPNA 4WR2A 3FZ0A 3EPWA 4I71A 4KL0A 1KIEA 2MASA 3B9XA 1Q8FA 3MKNA 3B9GA 1YOEA 1MASA 3G5IA 3T8JA 4I72A 1EZRA 3MKMA 3T8IA 4P5FA
chains in the Genus database with same CATH superfamily
4I75A 2C40A 4I74A 2FF1A 5TSQA 3EPXA 4I73A 2FF2A 1KICA 1HOZA 1R4FA 4I70A 4KPOA 1HP0A 2YHGA 4KPNA 4WR2A 3FZ0A 3EPWA 4I71A 4KL0A 1KIEA 2MASA 3B9XA 1Q8FA 3MKNA 3B9GA 1YOEA 1MASA 3G5IA 3T8JA 4I72A 1EZRA 3MKMA 3T8IA 4P5FA
chains in the Genus database with same CATH topology
4I75A 2C40A 4I74A 2FF1A 5TSQA 3EPXA 4I73A 2FF2A 1KICA 1HOZA 1R4FA 4I70A 4KPOA 1HP0A 2YHGA 4KPNA 4WR2A 3FZ0A 3EPWA 4I71A 4KL0A 1KIEA 2MASA 3B9XA 1Q8FA 3MKNA 3B9GA 1YOEA 1MASA 3G5IA 3T8JA 4I72A 1EZRA 3MKMA 3T8IA 4P5FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4I75 A;  2C40 A;  4I74 A;  2FF1 A;  5TSQ A;  3EPX A;  4I73 A;  2FF2 A;  1KIC A;  1HOZ A;  1R4F A;  4I70 A;  4KPO A;  1HP0 A;  2YHG A;  4KPN A;  4WR2 A;  3FZ0 A;  3EPW A;  4I71 A;  4KL0 A;  1KIE A;  2MAS A;  3B9X A;  1Q8F A;  3MKN A;  3B9G A;  1YOE A;  1MAS A;  3G5I A;  3T8J A;  4I72 A;  1EZR A;  3MKM A;  3T8I A;  4P5F A; 
#chains in the Genus database with same CATH topology
 4I75 A;  2C40 A;  4I74 A;  2FF1 A;  5TSQ A;  3EPX A;  4I73 A;  2FF2 A;  1KIC A;  1HOZ A;  1R4F A;  4I70 A;  4KPO A;  1HP0 A;  2YHG A;  4KPN A;  4WR2 A;  3FZ0 A;  3EPW A;  4I71 A;  4KL0 A;  1KIE A;  2MAS A;  3B9X A;  1Q8F A;  3MKN A;  3B9G A;  1YOE A;  1MAS A;  3G5I A;  3T8J A;  4I72 A;  1EZR A;  3MKM A;  3T8I A;  4P5F A; 
#chains in the Genus database with same CATH homology
 4I75 A;  2C40 A;  4I74 A;  2FF1 A;  5TSQ A;  3EPX A;  4I73 A;  2FF2 A;  1KIC A;  1HOZ A;  1R4F A;  4I70 A;  4KPO A;  1HP0 A;  2YHG A;  4KPN A;  4WR2 A;  3FZ0 A;  3EPW A;  4I71 A;  4KL0 A;  1KIE A;  2MAS A;  3B9X A;  1Q8F A;  3MKN A;  3B9G A;  1YOE A;  1MAS A;  3G5I A;  3T8J A;  4I72 A;  1EZR A;  3MKM A;  3T8I A;  4P5F A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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