4KQTA

Crystal structure of a putative outer membrane chaperone (omph-like) (cc_1914) from caulobacter crescentus cb15 at 2.83 a resolution (psi community target, shapiro)
Total Genus 65
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
65
sequence length
169
structure length
169
Chain Sequence
b'LYFQGTHGPALPGVCIFSSPRAVGSSLVGKAVDARLKTIIQQVNAELTGERTALDNEAKALDAKKTTIAQDALEQQAATLQAKANAWQRKGQLRQKEVEATEQKALSRVYQELNTPIQQVYQAQKCSVLLDREAVMLANPAMDITDAVVAALDARIKTLTFDRERLDQQ'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Putative outer membrane chaperone (OmpH-like)
publication title Crystal structure of a putative outer membrane chaperone (OmpH-like) (CC_1914) from Caulobacter crescentus CB15 at 2.83 A resolution (PSI Community Target, Shapiro)
rcsb
source organism Caulobacter crescentus
molecule tags Chaperone
total genus 65
structure length 169
sequence length 169
ec nomenclature
pdb deposition date 2013-05-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03938 OmpH Outer membrane protein (OmpH-like)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.910.20 Alpha Beta 2-Layer Sandwich Protein Binding, DinI Protein; Chain A Skp domain 4kqtA00
4KQTA 1U2MA 1SG2A
chains in the Genus database with same CATH superfamily
1U2MA 1PVJA 1SG2A 1GHHA 1DKIA 4KQTA 3BB7A 4EVXA
chains in the Genus database with same CATH topology
4KQTA 1U2MA 1SG2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4KQT A;  1U2M A;  1SG2 A; 
#chains in the Genus database with same CATH topology
 1U2M A;  1PVJ A;  1SG2 A;  1GHH A;  1DKI A;  4KQT A;  3BB7 A;  4EVX A; 
#chains in the Genus database with same CATH homology
 4KQT A;  1U2M A;  1SG2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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