4KRAA

Salmonella typhi ompf complex with ciprofloxacin
Total Genus 67
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
67
sequence length
341
structure length
341
Chain Sequence
MEIYNKDGNKLDLYGKAVGRHVWTTTGDSKNADQTYAQIGFKGETQINTDLTGFGQWEYRTKADRAEGEQQNSNLVRLAFAGLKYAEVGSIDYGRNYGIVYDVESYTDMAPYFSGETWGGAYTDNYMTSRAGGLLTYRNSDFFGLVDGLSFGIQYQGKNQDNHSINSQNGDGVGYTMAYEFDGFGVTAAYSNSKRTNDQQDRDGNGDRAESRAVGAKYDANNVYLAAVYAETRNMSIVENTVTDTVEMANKTQNLEVVAQYQFDFGLRPAISYVQSKGKQLNGAGGSADLAKYIQAGATYYFNKNMNVWVDYRFNLLDENDYSSSYVGTDDQAAVGITYQF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Salmonella typhi OmpF complex with Ciprofloxacin
rcsb
source organism Salmonella enterica subsp. enterica serovar typhi
molecule tags Membrane protein
molecule keywords Outer membrane protein F
total genus 67
structure length 341
sequence length 341
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2013-05-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 4kraA00
4KRAA 3A2SX 3VY8X 4LSEA 5PRNA 2FGQX 2XE5A 1H6S1 1E54A 3VZUX 5JDPA 4BUMX 1BH3A 2J1NA 7PRNA 2OMFA 4RJXA 4D64A 1PRNA 2XE2A 3POQA 6PRNA 3HWBA 2O4VA 2QTKA 3EMNX 2PORA 3SY9A 1GFMA 2XG6A 3HW9A 3PRNA 3POXA 4FRTA 1HXTA 2ODJA 4GCSA 4LSIA 3JTYA 4KR4A 3VZTX 2XE1A 3K19A 4RJWA 1GFQA 4D5UA 5DL5A 2FGRA 4C69X 5DL8A 2J4UP 4FSPA 2Y0HA 4D65A 4LSHA 1PHOA 5DL7A 1MPFA 4JFBA 3WI4A 3FYXA 3UPGA 4FRXA 3SZDA 3SYBA 3UU2A 3NSGA 3PORA 2Y2XA 4GCQA 1BT9A 4FOZA 3SZVA 4KR8A 4FSOA 4FT6A 4GCPA 1OSMA 1GFNA 3SYSA 3T20A 3VY9X 2ZFGA 3T0SA 3WI5A 2XE3A 3T24A 1GFPA 5FVNA 2Y0LA 1HXUA 1GFOA 1OPFA 4AUIA 4LSFA 1HXXA 8PRNA 3SY7A 4FMSA 3POUA 3VZWX 5DL6A 2PRNA 2Y0KA 3O0EA 2K4TA 2ZLDA
chains in the Genus database with same CATH superfamily
2KZ7B 4KRAA 2R88A 3A2SX 3DWOX 4FQEA 5G38A 5GV0A 2F1CX 2W81C 4LSEA 4G76A 3VY8X 2MHLA 3A0BO 3PQSA 1MM5A 5PRNA 2FGQX 2XE5A 4FZLA 1BXWA 1E54A 1QJ9A 3VZUX 3PGUA 4PUXA 1ZHWA 4BUMX 5JDPA 1IZNA 1BH3A 1MM4A 1ZHZA 1YS5A 2J1NA 2KXPB 2XTRA 2OMFA 4PJ0O 4RL9A 2W80C 7PRNA 4RJXA 5KAFO 1Q9GA 3V8UA 5G3AA 1PRNA 1ZHTA 2XE2A 2XMXA 2Y0KA 3QRAA 3POQA 4O3XB 2MNHA 4RLBA 4AKRA 6PRNA 1THQA 3JCUO 3LK42 2KXPA 3HWBA 1IZNB 2O4VA 2QTKA 3EMNX 3QRCA 5ADXK 3PF1A 4RLCA 2M06A 2PORA 3AAAB 1S5LO 3BS0A 3SY9A 2M07A 5TISO 1GFMA 5G26A 4N75A 3PQUA 2WJQA 5KAIO 4PR7A 4U9CA 2XG6A 2R4OA 4Z3TA 1ZHYA 2K0LA 3HW9A 3PRNA 1T16A 3POXA 4FRTA 1HXTA 2ODJA 4GCSA 4LSIA 5G39A 4AKMA 4AYEC 3JTYA 2XTQA 4KR4A 3AAEA 3VZTX 1Q9FA 2GE4A 1T1LA 2WVPA 1QJPA 4O4UA 3DA4A 3LK41 2XE1A 4UB6O 5ADXL 3GP6A 3BRZA 3LK3B 3K19A 5T5FA 3AA6B 2F1TA 4C4VA 3PGRA 2JQYA 4RJWA 4E1SA 5EE2A 1GFQA 4D5UA 2IWWA 5DL5A 4AYNA 1ORMA 4FZNA 2R89A 2FGRA 4C69X 3DWNA 4FUVA 5DL8A 3PGSA 4GF4A 2J4UP 4QQ1A 4FSPA 2Y0HA 4IL6O 2R8AA 2N2LA 3NJTA 4XNKA 1QJ8A 3HOEA 4LSHA 4D65A 1PHOA 5DL7A 3KZIO 3LK2A 1MPFA 4JFBA 3WI4A 4AFKA 3AA7A 4K3BA 4E1TA 1G90A 2AXTO 3O0EA 1ZHXA 3FYXA 5AFUL 3UPGA 4FRXA 3AA0B 3SYBA 3SZDA 3UU2A 4AYDC 4AYMC 3NSGA 2YPVA 4CTDA 3PORA 5GTHO 3DA3A 4O4XA 2Y2XA 2LFUA 3BRYA 5B66O 4GCQA 1BT9A 2F1VA 4G75A 3WU2O 4FOZA 5AFUK 2KC0A 2N2MA 4FESA 4KR8A 4FSOA 1P4TA 3SZVA 4O49A 2Y7SA 4FT6A 4GCPA 1OSMA 2KDYA 4K3CA 3AAAA 2X27X 1GFNA 2R4LA 3AA0A 3AA1B 3G7GA 4FZMA 3AA6A 3SYSA 4AYID 4B61A 3HOLA 2YNKA 4N59A 3KVDD 3AA7B 3RBHA 4O3YA 4F4BA 3VY9X 2X9KA 3T20A 2ZFGA 4UB8O 3T0SA 3WI5A 2XE3A 3C5OA 3AA1A 2R4NA 3T24A 4AKRB 3DZMA 2JMMA 3TZGA 1GFPA 5FVNA 2Y0LA 1HXUA 2ERVA 1GFOA 1OPFA 5H2FO 4O3ZA 4N58A 4AUIA 3VE2A 4LSFA 4XNLA 4C00A 1HXXA 2R4PA 2WJRA 4GHBA 4AZLA 5B5EO 4C4VB 4JCHA 2KZ7A 3LK3A 3A0HO 8PRNA 3UAQA 3SY7A 5GTIO 4FMSA 2IWVA 3POUA 3LK2B 3VE1A 3AAEB 3VZWX 5DL6A 5E79O 2PRNA 4N74A 5D5DA 5IYUA 4D64A 2LHFA 4O3WA 1H6S1 2ZLDA 2K4TA
chains in the Genus database with same CATH topology
2KZ7B 4KRAA 3A2SX 5GV0A 2W81C 3VY8X 4LSEA 4G76A 2MHLA 3PQSA 1MM5A 5PRNA 2FGQX 2XE5A 4FZLA 1BXWA 1H6S1 1E54A 1QJ9A 3VZUX 5JDPA 4PUXA 1ZHWA 4BUMX 1IZNA 1BH3A 1MM4A 1ZHZA 1YS5A 2J1NA 2KXPB 2XTRA 2OMFA 4RL9A 7PRNA 2W80C 4RJXA 3V8UA 1Q9GA 4D64A 4F4BA 1PRNA 1ZHTA 2XE2A 2XMXA 3QRAA 4O3XB 3POQA 4RLBA 2MNHA 4AKRA 6PRNA 1THQA 3LK42 2KXPA 3HWBA 1IZNB 2O4VA 2QTKA 3EMNX 3QRCA 5ADXK 4RLCA 2M06A 2PORA 3AAAB 3SY9A 2M07A 1GFMA 5G26A 3PQUA 4U9CA 2XG6A 4Z3TA 1ZHYA 2K0LA 3HW9A 3PRNA 3POXA 4FRTA 1HXTA 2ODJA 4GCSA 4LSIA 4AKMA 4AYEC 3JTYA 2XTQA 4KR4A 3AAEA 3VZTX 1Q9FA 2GE4A 1QJPA 4O4UA 3DA4A 3LK41 2XE1A 5ADXL 3GP6A 3LK3B 3K19A 5T5FA 3AA6B 2F1TA 4RJWA 5EE2A 1GFQA 4D5UA 5DL5A 4AYNA 1ORMA 4FZNA 2FGRA 4C69X 4FUVA 5DL8A 2J4UP 4GF4A 4QQ1A 4FSPA 2Y0HA 4D65A 2N2LA 4XNKA 4E1SA 1QJ8A 3HOEA 4LSHA 1PHOA 5DL7A 3LK2A 1MPFA 4JFBA 3WI4A 4AFKA 3AA7A 4E1TA 1G90A 5AFUL 3O0EA 1ZHXA 3FYXA 3UPGA 4FRXA 3AA0B 3SYBA 3SZDA 3UU2A 4AYDC 4AYMC 3NSGA 2YPVA 3PORA 3DA3A 4O4XA 2Y2XA 2LFUA 4GCQA 1BT9A 2F1VA 4G75A 4FOZA 5AFUK 2KC0A 2N2MA 4FESA 4KR8A 4FSOA 1P4TA 3SZVA 4O49A 2Y7SA 4FT6A 4GCPA 1OSMA 2KDYA 3AAAA 2X27X 1GFNA 3G7GA 3AA0A 3AA1B 4FZMA 3AA6A 3SYSA 4AYID 4B61A 3HOLA 2YNKA 4N59A 3KVDD 3AA7B 3RBHA 4O3YA 3T20A 3VY9X 2ZFGA 3T0SA 3WI5A 2XE3A 3C5OA 3AA1A 3T24A 4AKRB 2JMMA 3TZGA 1GFPA 5FVNA 2Y0LA 1HXUA 2ERVA 1GFOA 1OPFA 4O3ZA 4N58A 4AUIA 3VE2A 4LSFA 4XNLA 1HXXA 4GHBA 4AZLA 4JCHA 2KZ7A 3LK3A 8PRNA 3UAQA 3SY7A 4FMSA 3POUA 3LK2B 3VE1A 3AAEB 3VZWX 5DL6A 2PRNA 5IYUA 5D5DA 2LHFA 4O3WA 2Y0KA 2ZLDA 2K4TA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4KRA A;  3A2S X;  3VY8 X;  4LSE A;  5PRN A;  2FGQ X;  2XE5 A;  1H6S 1;  1E54 A;  3VZU X;  5JDP A;  4BUM X;  1BH3 A;  2J1N A;  7PRN A;  2OMF A;  4RJX A;  4D64 A;  1PRN A;  2XE2 A;  3POQ A;  6PRN A;  3HWB A;  2O4V A;  2QTK A;  3EMN X;  2POR A;  3SY9 A;  1GFM A;  2XG6 A;  3HW9 A;  3PRN A;  3POX A;  4FRT A;  1HXT A;  2ODJ A;  4GCS A;  4LSI A;  3JTY A;  4KR4 A;  3VZT X;  2XE1 A;  3K19 A;  4RJW A;  1GFQ A;  4D5U A;  5DL5 A;  2FGR A;  4C69 X;  5DL8 A;  2J4U P;  4FSP A;  2Y0H A;  4D65 A;  4LSH A;  1PHO A;  5DL7 A;  1MPF A;  4JFB A;  3WI4 A;  3FYX A;  3UPG A;  4FRX A;  3SZD A;  3SYB A;  3UU2 A;  3NSG A;  3POR A;  2Y2X A;  4GCQ A;  1BT9 A;  4FOZ A;  3SZV A;  4KR8 A;  4FSO A;  4FT6 A;  4GCP A;  1OSM A;  1GFN A;  3SYS A;  3T20 A;  3VY9 X;  2ZFG A;  3T0S A;  3WI5 A;  2XE3 A;  3T24 A;  1GFP A;  5FVN A;  2Y0L A;  1HXU A;  1GFO A;  1OPF A;  4AUI A;  4LSF A;  1HXX A;  8PRN A;  3SY7 A;  4FMS A;  3POU A;  3VZW X;  5DL6 A;  2PRN A;  2Y0K A;  3O0E A;  2K4T A;  2ZLD A; 
#chains in the Genus database with same CATH topology
 2KZ7 B;  4KRA A;  2R88 A;  3A2S X;  3DWO X;  4FQE A;  5G38 A;  5GV0 A;  2F1C X;  2W81 C;  4LSE A;  4G76 A;  3VY8 X;  2MHL A;  3A0B O;  3PQS A;  1MM5 A;  5PRN A;  2FGQ X;  2XE5 A;  4FZL A;  1BXW A;  1E54 A;  1QJ9 A;  3VZU X;  3PGU A;  4PUX A;  1ZHW A;  4BUM X;  5JDP A;  1IZN A;  1BH3 A;  1MM4 A;  1ZHZ A;  1YS5 A;  2J1N A;  2KXP B;  2XTR A;  2OMF A;  4PJ0 O;  4RL9 A;  2W80 C;  7PRN A;  4RJX A;  5KAF O;  1Q9G A;  3V8U A;  5G3A A;  1PRN A;  1ZHT A;  2XE2 A;  2XMX A;  2Y0K A;  3QRA A;  3POQ A;  4O3X B;  2MNH A;  4RLB A;  4AKR A;  6PRN A;  1THQ A;  3JCU O;  3LK4 2;  2KXP A;  3HWB A;  1IZN B;  2O4V A;  2QTK A;  3EMN X;  3QRC A;  5ADX K;  3PF1 A;  4RLC A;  2M06 A;  2POR A;  3AAA B;  1S5L O;  3BS0 A;  3SY9 A;  2M07 A;  5TIS O;  1GFM A;  5G26 A;  4N75 A;  3PQU A;  2WJQ A;  5KAI O;  4PR7 A;  4U9C A;  2XG6 A;  2R4O A;  4Z3T A;  1ZHY A;  2K0L A;  3HW9 A;  3PRN A;  1T16 A;  3POX A;  4FRT A;  1HXT A;  2ODJ A;  4GCS A;  4LSI A;  5G39 A;  4AKM A;  4AYE C;  3JTY A;  2XTQ A;  4KR4 A;  3AAE A;  3VZT X;  1Q9F A;  2GE4 A;  1T1L A;  2WVP A;  1QJP A;  4O4U A;  3DA4 A;  3LK4 1;  2XE1 A;  4UB6 O;  5ADX L;  3GP6 A;  3BRZ A;  3LK3 B;  3K19 A;  5T5F A;  3AA6 B;  2F1T A;  4C4V A;  3PGR A;  2JQY A;  4RJW A;  4E1S A;  5EE2 A;  1GFQ A;  4D5U A;  2IWW A;  5DL5 A;  4AYN A;  1ORM A;  4FZN A;  2R89 A;  2FGR A;  4C69 X;  3DWN A;  4FUV A;  5DL8 A;  3PGS A;  4GF4 A;  2J4U P;  4QQ1 A;  4FSP A;  2Y0H A;  4IL6 O;  2R8A A;  2N2L A;  3NJT A;  4XNK A;  1QJ8 A;  3HOE A;  4LSH A;  4D65 A;  1PHO A;  5DL7 A;  3KZI O;  3LK2 A;  1MPF A;  4JFB A;  3WI4 A;  4AFK A;  3AA7 A;  4K3B A;  4E1T A;  1G90 A;  2AXT O;  3O0E A;  1ZHX A;  3FYX A;  5AFU L;  3UPG A;  4FRX A;  3AA0 B;  3SYB A;  3SZD A;  3UU2 A;  4AYD C;  4AYM C;  3NSG A;  2YPV A;  4CTD A;  3POR A;  5GTH O;  3DA3 A;  4O4X A;  2Y2X A;  2LFU A;  3BRY A;  5B66 O;  4GCQ A;  1BT9 A;  2F1V A;  4G75 A;  3WU2 O;  4FOZ A;  5AFU K;  2KC0 A;  2N2M A;  4FES A;  4KR8 A;  4FSO A;  1P4T A;  3SZV A;  4O49 A;  2Y7S A;  4FT6 A;  4GCP A;  1OSM A;  2KDY A;  4K3C A;  3AAA A;  2X27 X;  1GFN A;  2R4L A;  3AA0 A;  3AA1 B;  3G7G A;  4FZM A;  3AA6 A;  3SYS A;  4AYI D;  4B61 A;  3HOL A;  2YNK A;  4N59 A;  3KVD D;  3AA7 B;  3RBH A;  4O3Y A;  4F4B A;  3VY9 X;  2X9K A;  3T20 A;  2ZFG A;  4UB8 O;  3T0S A;  3WI5 A;  2XE3 A;  3C5O A;  3AA1 A;  2R4N A;  3T24 A;  4AKR B;  3DZM A;  2JMM A;  3TZG A;  1GFP A;  5FVN A;  2Y0L A;  1HXU A;  2ERV A;  1GFO A;  1OPF A;  5H2F O;  4O3Z A;  4N58 A;  4AUI A;  3VE2 A;  4LSF A;  4XNL A;  4C00 A;  1HXX A;  2R4P A;  2WJR A;  4GHB A;  4AZL A;  5B5E O;  4C4V B;  4JCH A;  2KZ7 A;  3LK3 A;  3A0H O;  8PRN A;  3UAQ A;  3SY7 A;  5GTI O;  4FMS A;  2IWV A;  3POU A;  3LK2 B;  3VE1 A;  3AAE B;  3VZW X;  5DL6 A;  5E79 O;  2PRN A;  4N74 A;  5D5D A;  5IYU A;  4D64 A;  2LHF A;  4O3W A;  1H6S 1;  2ZLD A;  2K4T A; 
#chains in the Genus database with same CATH homology
 2KZ7 B;  4KRA A;  3A2S X;  5GV0 A;  2W81 C;  3VY8 X;  4LSE A;  4G76 A;  2MHL A;  3PQS A;  1MM5 A;  5PRN A;  2FGQ X;  2XE5 A;  4FZL A;  1BXW A;  1H6S 1;  1E54 A;  1QJ9 A;  3VZU X;  5JDP A;  4PUX A;  1ZHW A;  4BUM X;  1IZN A;  1BH3 A;  1MM4 A;  1ZHZ A;  1YS5 A;  2J1N A;  2KXP B;  2XTR A;  2OMF A;  4RL9 A;  7PRN A;  2W80 C;  4RJX A;  3V8U A;  1Q9G A;  4D64 A;  4F4B A;  1PRN A;  1ZHT A;  2XE2 A;  2XMX A;  3QRA A;  4O3X B;  3POQ A;  4RLB A;  2MNH A;  4AKR A;  6PRN A;  1THQ A;  3LK4 2;  2KXP A;  3HWB A;  1IZN B;  2O4V A;  2QTK A;  3EMN X;  3QRC A;  5ADX K;  4RLC A;  2M06 A;  2POR A;  3AAA B;  3SY9 A;  2M07 A;  1GFM A;  5G26 A;  3PQU A;  4U9C A;  2XG6 A;  4Z3T A;  1ZHY A;  2K0L A;  3HW9 A;  3PRN A;  3POX A;  4FRT A;  1HXT A;  2ODJ A;  4GCS A;  4LSI A;  4AKM A;  4AYE C;  3JTY A;  2XTQ A;  4KR4 A;  3AAE A;  3VZT X;  1Q9F A;  2GE4 A;  1QJP A;  4O4U A;  3DA4 A;  3LK4 1;  2XE1 A;  5ADX L;  3GP6 A;  3LK3 B;  3K19 A;  5T5F A;  3AA6 B;  2F1T A;  4RJW A;  5EE2 A;  1GFQ A;  4D5U A;  5DL5 A;  4AYN A;  1ORM A;  4FZN A;  2FGR A;  4C69 X;  4FUV A;  5DL8 A;  2J4U P;  4GF4 A;  4QQ1 A;  4FSP A;  2Y0H A;  4D65 A;  2N2L A;  4XNK A;  4E1S A;  1QJ8 A;  3HOE A;  4LSH A;  1PHO A;  5DL7 A;  3LK2 A;  1MPF A;  4JFB A;  3WI4 A;  4AFK A;  3AA7 A;  4E1T A;  1G90 A;  5AFU L;  3O0E A;  1ZHX A;  3FYX A;  3UPG A;  4FRX A;  3AA0 B;  3SYB A;  3SZD A;  3UU2 A;  4AYD C;  4AYM C;  3NSG A;  2YPV A;  3POR A;  3DA3 A;  4O4X A;  2Y2X A;  2LFU A;  4GCQ A;  1BT9 A;  2F1V A;  4G75 A;  4FOZ A;  5AFU K;  2KC0 A;  2N2M A;  4FES A;  4KR8 A;  4FSO A;  1P4T A;  3SZV A;  4O49 A;  2Y7S A;  4FT6 A;  4GCP A;  1OSM A;  2KDY A;  3AAA A;  2X27 X;  1GFN A;  3G7G A;  3AA0 A;  3AA1 B;  4FZM A;  3AA6 A;  3SYS A;  4AYI D;  4B61 A;  3HOL A;  2YNK A;  4N59 A;  3KVD D;  3AA7 B;  3RBH A;  4O3Y A;  3T20 A;  3VY9 X;  2ZFG A;  3T0S A;  3WI5 A;  2XE3 A;  3C5O A;  3AA1 A;  3T24 A;  4AKR B;  2JMM A;  3TZG A;  1GFP A;  5FVN A;  2Y0L A;  1HXU A;  2ERV A;  1GFO A;  1OPF A;  4O3Z A;  4N58 A;  4AUI A;  3VE2 A;  4LSF A;  4XNL A;  1HXX A;  4GHB A;  4AZL A;  4JCH A;  2KZ7 A;  3LK3 A;  8PRN A;  3UAQ A;  3SY7 A;  4FMS A;  3POU A;  3LK2 B;  3VE1 A;  3AAE B;  3VZW X;  5DL6 A;  2PRN A;  5IYU A;  5D5D A;  2LHF A;  4O3W A;  2Y0K A;  2ZLD A;  2K4T A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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