4KRAA

Salmonella typhi ompf complex with ciprofloxacin
Total Genus 67
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
67
sequence length
341
structure length
341
Chain Sequence
MEIYNKDGNKLDLYGKAVGRHVWTTTGDSKNADQTYAQIGFKGETQINTDLTGFGQWEYRTKADRAEGEQQNSNLVRLAFAGLKYAEVGSIDYGRNYGIVYDVESYTDMAPYFSGETWGGAYTDNYMTSRAGGLLTYRNSDFFGLVDGLSFGIQYQGKNQDNHSINSQNGDGVGYTMAYEFDGFGVTAAYSNSKRTNDQQDRDGNGDRAESRAVGAKYDANNVYLAAVYAETRNMSIVENTVTDTVEMANKTQNLEVVAQYQFDFGLRPAISYVQSKGKQLNGAGGSADLAKYIQAGATYYFNKNMNVWVDYRFNLLDENDYSSSYVGTDDQAAVGITYQF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
molecule keywords Outer membrane protein F
publication title Salmonella typhi OmpF complex with Ciprofloxacin
rcsb
source organism Salmonella enterica subsp. enterica serovar typhi
total genus 67
structure length 341
sequence length 341
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2013-05-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 4kraA00
3WI5A 4KRAA 1BH3A 4GCQA 1OSMA 3HW9A 1GFPA 2FGRA 2ZLDA 3JTYA 4KR8A 3NSGA 2OMFA 1BT9A 5DL7A 2O4VA 4FOZA 3SYBA 2K4TA 2Y0HA 5DL8A 2FGQX 3POUA 4RJXA 3SY7A 7PRNA 4RJWA 4D5UA 3HWBA 4FSOA 1H6S1 5PRNA 3PORA 3VY8X 2Y0KA 4JFBA 3T20A 3O0EA 5JDPA 1E54A 1HXXA 4AUIA 2J1NA 4LSIA 6PRNA 3POQA 2XE2A 3K19A 3VY9X 2XG6A 2ZFGA 3T0SA 2XE1A 3WI4A 4LSFA 4FMSA 4LSEA 1PRNA 4FRTA 2PRNA 3SZDA 2Y2XA 5DL6A 2Y0LA 3A2SX 3T24A 4D65A 4LSHA 5FVNA 2XE3A 1GFMA 8PRNA 3EMNX 4GCSA 5DL5A 3UPGA 3FYXA 3SY9A 2J4UP 4FSPA 3VZWX 3VZUX 1PHOA 4BUMX 1HXUA 4FT6A 2PORA 4KR4A 1OPFA 1MPFA 3SYSA 1GFOA 4FRXA 4D64A 1GFNA 2QTKA 3POXA 1HXTA 3PRNA 1GFQA 3SZVA 2ODJA 2XE5A 3VZTX 3UU2A 4C69X 4GCPA
chains in the Genus database with same CATH superfamily
3WI5A 2R4OA 4KRAA 5TISO 4C4VB 3TZGA 1BH3A 2KXPA 3A0HO 3QRCA 4U9CA 3PF1A 4GCQA 5GTIO 1OSMA 3HW9A 4O49A 2R4LA 1GFPA 2F1CX 4PJ0O 3A0BO 2FGRA 4F4BA 2KDYA 4N59A 2ZLDA 1P4TA 3DZMA 3AA0B 2YPVA 3AA6B 3HOEA 3JTYA 4KR8A 3VE1A 4AYEC 3NSGA 4FZLA 3AAAB 3JCUO 3C5OA 3LK41 3DWNA 1QJ8A 2IWVA 3GP6A 2W80C 3KZIO 2R4PA 4FZMA 2OMFA 4G75A 4AYMC 1BT9A 2R8AA 2R89A 3AA0A 3AA6A 1MM5A 3UAQA 4Z3TA 1YS5A 2KXPB 5IYUA 1ZHTA 2R4NA 1THQA 4IL6O 5DL7A 4N58A 1IZNB 3KVDD 2F1VA 4QQ1A 5GV0A 4XNKA 2O4VA 2MHLA 4FOZA 3DWOX 4AYDC 2KZ7A 3SYBA 2K4TA 2LFUA 2Y0HA 4FUVA 5DL8A 2FGQX 3POUA 3G7GA 4RJXA 5KAIO 2X27X 3SY7A 7PRNA 2AXTO 4RJWA 4PR7A 2K0LA 3HWBA 5G26A 3PGSA 4D5UA 5ADXL 4FSOA 1IZNA 1ZHZA 4N74A 1Q9FA 3NJTA 1H6S1 4FQEA 4AZLA 5AFUL 2YNKA 3DA4A 5G3AA 5PRNA 1ZHXA 3PORA 2M06A 5GTHO 4RLCA 3VY8X 4N75A 2XMXA 2Y0KA 2WVPA 4FZNA 4JFBA 2KC0A 2N2MA 1T16A 3T20A 3V8UA 3O0EA 4E1TA 4AFKA 5JDPA 1HXXA 1E54A 2XTRA 2J1NA 4RLBA 4AUIA 2KZ7B 5KAFO 4UB6O 2ERVA 3DA3A 4O3ZA 3AA7A 3RBHA 2JMMA 1T1LA 2WJQA 3BRZA 4JCHA 4LSIA 2XE2A 3BRYA 3K19A 3POQA 3VY9X 3WU2O 4PUXA 6PRNA 2XG6A 2ZFGA 4AKMA 1QJ9A 2XTQA 4GHBA 2IWWA 3T0SA 2XE1A 4K3BA 4AYID 4AKRB 2N2LA 3LK3A 3WI4A 5B66O 4LSFA 4FMSA 4LSEA 5G39A 1ORMA 1PRNA 2WJRA 1S5LO 2M07A 2LHFA 4FRTA 2PRNA 3AA7B 3PGUA 3PQUA 4XNLA 3SZDA 1BXWA 1ZHYA 2Y2XA 5DL6A 4AKRA 2Y0LA 3A2SX 3T24A 4D65A 4GF4A 4LSHA 4O3WA 5FVNA 3LK2A 2XE3A 4B61A 1QJPA 1GFMA 3VE2A 5E79O 3EMNX 4GCSA 4O4UA 5DL5A 8PRNA 3UPGA 2GE4A 3FYXA 3SY9A 5AFUK 5EE2A 2J4UP 4FSPA 3VZWX 5B5EO 3LK3B 3PGRA 1PHOA 2F1TA 3AA1A 4K3CA 3VZUX 1HXUA 3AAEA 4FT6A 4BUMX 1G90A 4C00A 2PORA 2R88A 4KR4A 3BS0A 5H2FO 4AYNA 1OPFA 1ZHWA 2W81C 4C4VA 1MPFA 3SYSA 4E1SA 4RL9A 5T5FA 1GFOA 3LK42 4FRXA 5D5DA 1Q9GA 3HOLA 3LK2B 4D64A 1GFNA 2QTKA 2X9KA 3POXA 1HXTA 5G38A 3PRNA 1GFQA 4G76A 4FESA 3SZVA 2ODJA 2XE5A 4O4XA 3VZTX 3AA1B 2JQYA 4O3YA 3AAAA 3AAEB 3UU2A 4O3XB 2MNHA 3QRAA 4CTDA 4C69X 5ADXK 4UB8O 4GCPA 2Y7SA 1MM4A 3PQSA
chains in the Genus database with same CATH topology
3WI5A 4KRAA 3TZGA 1BH3A 2KXPA 3QRCA 4U9CA 4GCQA 1OSMA 3HW9A 4O49A 1GFPA 2FGRA 4F4BA 2KDYA 4N59A 2ZLDA 1P4TA 3AA0B 2YPVA 3AA6B 3HOEA 3JTYA 4KR8A 3VE1A 4AYEC 3NSGA 4FZLA 3AAAB 3LK41 3C5OA 1QJ8A 3GP6A 2W80C 4FZMA 4G75A 2OMFA 4AYMC 1BT9A 3AA0A 3AA6A 1MM5A 3UAQA 4Z3TA 1YS5A 2KXPB 5IYUA 1ZHTA 1THQA 5DL7A 4N58A 1IZNB 3KVDD 2F1VA 4QQ1A 5GV0A 4XNKA 2O4VA 2MHLA 4FOZA 4AYDC 2KZ7A 3SYBA 2K4TA 2LFUA 2Y0HA 4FUVA 5DL8A 2FGQX 3POUA 3G7GA 4RJXA 3SY7A 2X27X 7PRNA 4RJWA 4D5UA 2K0LA 3HWBA 5G26A 5ADXL 4FSOA 1IZNA 1ZHZA 4AZLA 1Q9FA 5AFUL 1H6S1 2YNKA 3DA4A 5PRNA 1ZHXA 3PORA 2M06A 4RLCA 3VY8X 2XMXA 2Y0KA 4FZNA 4JFBA 2KC0A 2N2MA 3T20A 3V8UA 3O0EA 4E1TA 4AFKA 5JDPA 1HXXA 1E54A 2XTRA 2J1NA 4RLBA 4AUIA 2KZ7B 2ERVA 3DA3A 4O3ZA 3AA7A 3RBHA 2JMMA 4JCHA 4LSIA 6PRNA 2XE2A 3POQA 3K19A 3VY9X 4PUXA 2XG6A 2ZFGA 4AKMA 1QJ9A 2XTQA 4GHBA 3T0SA 2XE1A 4AYID 4AKRB 2N2LA 3LK3A 3WI4A 4LSFA 4FMSA 4LSEA 1ORMA 1PRNA 2M07A 2LHFA 4FRTA 2PRNA 3AA7B 3PQUA 4XNLA 3SZDA 1BXWA 1ZHYA 2Y2XA 5DL6A 4AKRA 2Y0LA 3A2SX 3T24A 4D65A 4GF4A 4LSHA 4O3WA 5FVNA 3LK2A 2XE3A 4B61A 1QJPA 1GFMA 3VE2A 8PRNA 3EMNX 4GCSA 4O4UA 5DL5A 3UPGA 2GE4A 3FYXA 3SY9A 5AFUK 5EE2A 2J4UP 4FSPA 3VZWX 3LK3B 3VZUX 1PHOA 2F1TA 3AA1A 4BUMX 1HXUA 3AAEA 4FT6A 1G90A 2PORA 4KR4A 4AYNA 1OPFA 1ZHWA 2W81C 1MPFA 3SYSA 4E1SA 4RL9A 5T5FA 1GFOA 3LK42 4FRXA 5D5DA 1Q9GA 3HOLA 3LK2B 4D64A 1GFNA 2QTKA 3POXA 1HXTA 3PRNA 1GFQA 4G76A 4FESA 3SZVA 2ODJA 2XE5A 4O4XA 3VZTX 3AA1B 4O3YA 3AAAA 3AAEB 3UU2A 4O3XB 2MNHA 3QRAA 4C69X 5ADXK 4GCPA 2Y7SA 1MM4A 3PQSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3WI5 A;  4KRA A;  1BH3 A;  4GCQ A;  1OSM A;  3HW9 A;  1GFP A;  2FGR A;  2ZLD A;  3JTY A;  4KR8 A;  3NSG A;  2OMF A;  1BT9 A;  5DL7 A;  2O4V A;  4FOZ A;  3SYB A;  2K4T A;  2Y0H A;  5DL8 A;  2FGQ X;  3POU A;  4RJX A;  3SY7 A;  7PRN A;  4RJW A;  4D5U A;  3HWB A;  4FSO A;  1H6S 1;  5PRN A;  3POR A;  3VY8 X;  2Y0K A;  4JFB A;  3T20 A;  3O0E A;  5JDP A;  1E54 A;  1HXX A;  4AUI A;  2J1N A;  4LSI A;  6PRN A;  3POQ A;  2XE2 A;  3K19 A;  3VY9 X;  2XG6 A;  2ZFG A;  3T0S A;  2XE1 A;  3WI4 A;  4LSF A;  4FMS A;  4LSE A;  1PRN A;  4FRT A;  2PRN A;  3SZD A;  2Y2X A;  5DL6 A;  2Y0L A;  3A2S X;  3T24 A;  4D65 A;  4LSH A;  5FVN A;  2XE3 A;  1GFM A;  8PRN A;  3EMN X;  4GCS A;  5DL5 A;  3UPG A;  3FYX A;  3SY9 A;  2J4U P;  4FSP A;  3VZW X;  3VZU X;  1PHO A;  4BUM X;  1HXU A;  4FT6 A;  2POR A;  4KR4 A;  1OPF A;  1MPF A;  3SYS A;  1GFO A;  4FRX A;  4D64 A;  1GFN A;  2QTK A;  3POX A;  1HXT A;  3PRN A;  1GFQ A;  3SZV A;  2ODJ A;  2XE5 A;  3VZT X;  3UU2 A;  4C69 X;  4GCP A; 
#chains in the Genus database with same CATH topology
 3WI5 A;  2R4O A;  4KRA A;  5TIS O;  4C4V B;  3TZG A;  1BH3 A;  2KXP A;  3A0H O;  3QRC A;  4U9C A;  3PF1 A;  4GCQ A;  5GTI O;  1OSM A;  3HW9 A;  4O49 A;  2R4L A;  1GFP A;  2F1C X;  4PJ0 O;  3A0B O;  2FGR A;  4F4B A;  2KDY A;  4N59 A;  2ZLD A;  1P4T A;  3DZM A;  3AA0 B;  2YPV A;  3AA6 B;  3HOE A;  3JTY A;  4KR8 A;  3VE1 A;  4AYE C;  3NSG A;  4FZL A;  3AAA B;  3JCU O;  3C5O A;  3LK4 1;  3DWN A;  1QJ8 A;  2IWV A;  3GP6 A;  2W80 C;  3KZI O;  2R4P A;  4FZM A;  2OMF A;  4G75 A;  4AYM C;  1BT9 A;  2R8A A;  2R89 A;  3AA0 A;  3AA6 A;  1MM5 A;  3UAQ A;  4Z3T A;  1YS5 A;  2KXP B;  5IYU A;  1ZHT A;  2R4N A;  1THQ A;  4IL6 O;  5DL7 A;  4N58 A;  1IZN B;  3KVD D;  2F1V A;  4QQ1 A;  5GV0 A;  4XNK A;  2O4V A;  2MHL A;  4FOZ A;  3DWO X;  4AYD C;  2KZ7 A;  3SYB A;  2K4T A;  2LFU A;  2Y0H A;  4FUV A;  5DL8 A;  2FGQ X;  3POU A;  3G7G A;  4RJX A;  5KAI O;  2X27 X;  3SY7 A;  7PRN A;  2AXT O;  4RJW A;  4PR7 A;  2K0L A;  3HWB A;  5G26 A;  3PGS A;  4D5U A;  5ADX L;  4FSO A;  1IZN A;  1ZHZ A;  4N74 A;  1Q9F A;  3NJT A;  1H6S 1;  4FQE A;  4AZL A;  5AFU L;  2YNK A;  3DA4 A;  5G3A A;  5PRN A;  1ZHX A;  3POR A;  2M06 A;  5GTH O;  4RLC A;  3VY8 X;  4N75 A;  2XMX A;  2Y0K A;  2WVP A;  4FZN A;  4JFB A;  2KC0 A;  2N2M A;  1T16 A;  3T20 A;  3V8U A;  3O0E A;  4E1T A;  4AFK A;  5JDP A;  1HXX A;  1E54 A;  2XTR A;  2J1N A;  4RLB A;  4AUI A;  2KZ7 B;  5KAF O;  4UB6 O;  2ERV A;  3DA3 A;  4O3Z A;  3AA7 A;  3RBH A;  2JMM A;  1T1L A;  2WJQ A;  3BRZ A;  4JCH A;  4LSI A;  2XE2 A;  3BRY A;  3K19 A;  3POQ A;  3VY9 X;  3WU2 O;  4PUX A;  6PRN A;  2XG6 A;  2ZFG A;  4AKM A;  1QJ9 A;  2XTQ A;  4GHB A;  2IWW A;  3T0S A;  2XE1 A;  4K3B A;  4AYI D;  4AKR B;  2N2L A;  3LK3 A;  3WI4 A;  5B66 O;  4LSF A;  4FMS A;  4LSE A;  5G39 A;  1ORM A;  1PRN A;  2WJR A;  1S5L O;  2M07 A;  2LHF A;  4FRT A;  2PRN A;  3AA7 B;  3PGU A;  3PQU A;  4XNL A;  3SZD A;  1BXW A;  1ZHY A;  2Y2X A;  5DL6 A;  4AKR A;  2Y0L A;  3A2S X;  3T24 A;  4D65 A;  4GF4 A;  4LSH A;  4O3W A;  5FVN A;  3LK2 A;  2XE3 A;  4B61 A;  1QJP A;  1GFM A;  3VE2 A;  5E79 O;  3EMN X;  4GCS A;  4O4U A;  5DL5 A;  8PRN A;  3UPG A;  2GE4 A;  3FYX A;  3SY9 A;  5AFU K;  5EE2 A;  2J4U P;  4FSP A;  3VZW X;  5B5E O;  3LK3 B;  3PGR A;  1PHO A;  2F1T A;  3AA1 A;  4K3C A;  3VZU X;  1HXU A;  3AAE A;  4FT6 A;  4BUM X;  1G90 A;  4C00 A;  2POR A;  2R88 A;  4KR4 A;  3BS0 A;  5H2F O;  4AYN A;  1OPF A;  1ZHW A;  2W81 C;  4C4V A;  1MPF A;  3SYS A;  4E1S A;  4RL9 A;  5T5F A;  1GFO A;  3LK4 2;  4FRX A;  5D5D A;  1Q9G A;  3HOL A;  3LK2 B;  4D64 A;  1GFN A;  2QTK A;  2X9K A;  3POX A;  1HXT A;  5G38 A;  3PRN A;  1GFQ A;  4G76 A;  4FES A;  3SZV A;  2ODJ A;  2XE5 A;  4O4X A;  3VZT X;  3AA1 B;  2JQY A;  4O3Y A;  3AAA A;  3AAE B;  3UU2 A;  4O3X B;  2MNH A;  3QRA A;  4CTD A;  4C69 X;  5ADX K;  4UB8 O;  4GCP A;  2Y7S A;  1MM4 A;  3PQS A; 
#chains in the Genus database with same CATH homology
 3WI5 A;  4KRA A;  3TZG A;  1BH3 A;  2KXP A;  3QRC A;  4U9C A;  4GCQ A;  1OSM A;  3HW9 A;  4O49 A;  1GFP A;  2FGR A;  4F4B A;  2KDY A;  4N59 A;  2ZLD A;  1P4T A;  3AA0 B;  2YPV A;  3AA6 B;  3HOE A;  3JTY A;  4KR8 A;  3VE1 A;  4AYE C;  3NSG A;  4FZL A;  3AAA B;  3LK4 1;  3C5O A;  1QJ8 A;  3GP6 A;  2W80 C;  4FZM A;  4G75 A;  2OMF A;  4AYM C;  1BT9 A;  3AA0 A;  3AA6 A;  1MM5 A;  3UAQ A;  4Z3T A;  1YS5 A;  2KXP B;  5IYU A;  1ZHT A;  1THQ A;  5DL7 A;  4N58 A;  1IZN B;  3KVD D;  2F1V A;  4QQ1 A;  5GV0 A;  4XNK A;  2O4V A;  2MHL A;  4FOZ A;  4AYD C;  2KZ7 A;  3SYB A;  2K4T A;  2LFU A;  2Y0H A;  4FUV A;  5DL8 A;  2FGQ X;  3POU A;  3G7G A;  4RJX A;  3SY7 A;  2X27 X;  7PRN A;  4RJW A;  4D5U A;  2K0L A;  3HWB A;  5G26 A;  5ADX L;  4FSO A;  1IZN A;  1ZHZ A;  4AZL A;  1Q9F A;  5AFU L;  1H6S 1;  2YNK A;  3DA4 A;  5PRN A;  1ZHX A;  3POR A;  2M06 A;  4RLC A;  3VY8 X;  2XMX A;  2Y0K A;  4FZN A;  4JFB A;  2KC0 A;  2N2M A;  3T20 A;  3V8U A;  3O0E A;  4E1T A;  4AFK A;  5JDP A;  1HXX A;  1E54 A;  2XTR A;  2J1N A;  4RLB A;  4AUI A;  2KZ7 B;  2ERV A;  3DA3 A;  4O3Z A;  3AA7 A;  3RBH A;  2JMM A;  4JCH A;  4LSI A;  6PRN A;  2XE2 A;  3POQ A;  3K19 A;  3VY9 X;  4PUX A;  2XG6 A;  2ZFG A;  4AKM A;  1QJ9 A;  2XTQ A;  4GHB A;  3T0S A;  2XE1 A;  4AYI D;  4AKR B;  2N2L A;  3LK3 A;  3WI4 A;  4LSF A;  4FMS A;  4LSE A;  1ORM A;  1PRN A;  2M07 A;  2LHF A;  4FRT A;  2PRN A;  3AA7 B;  3PQU A;  4XNL A;  3SZD A;  1BXW A;  1ZHY A;  2Y2X A;  5DL6 A;  4AKR A;  2Y0L A;  3A2S X;  3T24 A;  4D65 A;  4GF4 A;  4LSH A;  4O3W A;  5FVN A;  3LK2 A;  2XE3 A;  4B61 A;  1QJP A;  1GFM A;  3VE2 A;  8PRN A;  3EMN X;  4GCS A;  4O4U A;  5DL5 A;  3UPG A;  2GE4 A;  3FYX A;  3SY9 A;  5AFU K;  5EE2 A;  2J4U P;  4FSP A;  3VZW X;  3LK3 B;  3VZU X;  1PHO A;  2F1T A;  3AA1 A;  4BUM X;  1HXU A;  3AAE A;  4FT6 A;  1G90 A;  2POR A;  4KR4 A;  4AYN A;  1OPF A;  1ZHW A;  2W81 C;  1MPF A;  3SYS A;  4E1S A;  4RL9 A;  5T5F A;  1GFO A;  3LK4 2;  4FRX A;  5D5D A;  1Q9G A;  3HOL A;  3LK2 B;  4D64 A;  1GFN A;  2QTK A;  3POX A;  1HXT A;  3PRN A;  1GFQ A;  4G76 A;  4FES A;  3SZV A;  2ODJ A;  2XE5 A;  4O4X A;  3VZT X;  3AA1 B;  4O3Y A;  3AAA A;  3AAE B;  3UU2 A;  4O3X B;  2MNH A;  3QRA A;  4C69 X;  5ADX K;  4GCP A;  2Y7S A;  1MM4 A;  3PQS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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