4KSZA

Crystal structure of bovine lactoperoxidase complexed with cystiene at 1.98a resolution
Total Genus 188
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
188
sequence length
595
structure length
594
Chain Sequence
SWEVGCGAPVPLVKCDENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRKTRNGFRVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFAPETELGSNEHSKTQCEEYCIQGDNCFPIMFPKNDPKLKTQGKCMPFFRAGFVCPTPPYQSLAREQINAVTSFLDASLVYGSEPLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKKPSPCEFINTTARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLGSEMQKWIPPYQGYNNSVDPRISNVFTFAFRFGHMEVPSTVSRLDENYQPWGPEAELPLHTLFFNTWRIIKDGGIDPLVRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKVSFSRLICDNTHITKVPLHAFQANNYPHDFVDCSTVDKLDLSPWASREN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Lactoperoxidase
publication title Crystal structure of bovine lactoperoxidase complexed with cystiene at 1.98A resolution
rcsb
total genus 188
structure length 594
sequence length 595
ec nomenclature ec 1.11.1.7: Peroxidase.
pdb deposition date 2013-05-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03098 An_peroxidase Animal haem peroxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.640.10 Mainly Alpha Orthogonal Bundle Myeloperoxidase, subunit C Haem peroxidase domain superfamily, animal type 4kszA00
2QPKA 5GLSA 1D7WC 2OJVA 3F9PC 3N8ZA 3NYHA 5FDQA 3FAQA 3N8YA 5IKQA 4GM7A 2OYEP 2QRBA 4LJJA 3R5QA 4COXA 3ERIA 1IGZA 2NQXA 2QQTA 3Q7DA 5IKVA 4HHRA 3NTGA 2R5LA 3R55A 3ZS1C 3GCLA 1EBVA 3QL6A 4M11A 4HHSA 3N8WB 3NTBA 1DNUC 4RRZA 1PXXA 4M10A 1MHLC 3GCJA 3N8VA 4RS0A 3GC1A 1IGXA 4KSZA 3MQEA 3KK6A 3QH0A 4KVJA 2PUMA 5FF1A 3QMOA 4Z0LA 4RRYA 1Q4GA 3FNLA 1EQHA 1CQEA 3PGHA 4MSFA 4PH9A 5F19A 3TGYA 3NT1A 4E1GA 5HPWA 4IG5A 4PNXA 3HS5A 5KIRA 2EFBA 4KVKA 2AYLA 3KRKA 1PGEA 2IPSA 1D2VC 3R4XA 1EQGA 3OLTA 2O86A 1HT5A 3N8WA 4N7AA 3OLUA 4OTJA 3BXIA 3N8XA 4OTYA 3GCKA 2OYUP 4Y55A 3TZIA 4GN6A 4C1MC 3OGWA 4O1ZA 5IKTA 5F1AA 3KRQA 1CVUA 4RUTA 5GH0A 3HS7A 5FIWC 4NT3A 4NJBA 1DNWC 3PY4A 3N8FA 1CX2A 3RKEA 1HT8A 3NIUA 3LN0A 3RR3A 2Z5ZA 3Q9KA 3NAKA 2GJMA 1DDXA 2EHAA 3ZS0C 6COXA 1MYPC 1DIYA 3I6NA 5IKRA 3V6QA 4QYQA 4RRXA 5B72A 1U67A 3QF1A 1PRHA 4FM5A 3N8YB 4QJQA 1D5LC 4DL1C 2PT3A 3UBAA 3LN1A 2E9EA 5JW1A 5COXA 2IKCA 3SXVA 4OEKA 1CXPC 3MDLA 3R5OA 3HS6A 3ERHA 4RRWA 1FE2A 1PTHA 5JVYA 4KVLA 5JVZA 3S4FA
chains in the Genus database with same CATH superfamily
2QPKA 5GLSA 1D7WC 2OJVA 3F9PC 3N8ZA 3NYHA 5FDQA 3FAQA 3N8YA 5IKQA 4GM7A 2OYEP 2QRBA 4LJJA 3R5QA 4COXA 3ERIA 1IGZA 2NQXA 2QQTA 3Q7DA 5IKVA 4HHRA 3NTGA 2R5LA 3R55A 3ZS1C 3GCLA 1EBVA 3QL6A 4M11A 4HHSA 3N8WB 3NTBA 1DNUC 4RRZA 1PXXA 4M10A 1MHLC 3GCJA 3N8VA 4RS0A 3GC1A 1IGXA 4KSZA 3MQEA 3KK6A 3QH0A 4KVJA 2PUMA 5FF1A 3QMOA 4Z0LA 4RRYA 1Q4GA 3FNLA 1EQHA 1CQEA 3PGHA 4MSFA 4PH9A 5F19A 3TGYA 3NT1A 4E1GA 5HPWA 4IG5A 4PNXA 3HS5A 5KIRA 2EFBA 4KVKA 2AYLA 3KRKA 1PGEA 2IPSA 1D2VC 3R4XA 1EQGA 3OLTA 2O86A 1HT5A 3N8WA 4N7AA 3OLUA 4OTJA 3BXIA 3N8XA 4OTYA 3GCKA 2OYUP 4Y55A 3TZIA 4GN6A 4C1MC 3OGWA 4O1ZA 5IKTA 5F1AA 3KRQA 1CVUA 4RUTA 5GH0A 3HS7A 5FIWC 4NT3A 4NJBA 1DNWC 3PY4A 3N8FA 1CX2A 3RKEA 1HT8A 3NIUA 3LN0A 3RR3A 2Z5ZA 3Q9KA 3NAKA 2GJMA 1DDXA 2EHAA 3ZS0C 6COXA 1MYPC 1DIYA 3I6NA 5IKRA 3V6QA 4QYQA 4RRXA 5B72A 1U67A 3QF1A 1PRHA 4FM5A 3N8YB 4QJQA 1D5LC 4DL1C 2PT3A 3UBAA 3LN1A 2E9EA 5JW1A 5COXA 2IKCA 3SXVA 4OEKA 1CXPC 3MDLA 3R5OA 3HS6A 3ERHA 4RRWA 1FE2A 1PTHA 5JVYA 4KVLA 5JVZA 3S4FA
chains in the Genus database with same CATH topology
2QPKA 5GLSA 1D7WC 2OJVA 3F9PC 3N8ZA 3NYHA 5FDQA 3FAQA 3N8YA 5IKQA 4GM7A 2OYEP 2QRBA 4LJJA 3R5QA 4COXA 3ERIA 1IGZA 2NQXA 2QQTA 3Q7DA 5IKVA 4HHRA 3NTGA 2R5LA 3R55A 3ZS1C 3GCLA 1EBVA 3QL6A 4M11A 4HHSA 3N8WB 3NTBA 1DNUC 4RRZA 1PXXA 4M10A 1MHLC 3GCJA 3N8VA 4RS0A 3GC1A 1IGXA 4KSZA 3MQEA 3KK6A 3QH0A 4KVJA 2PUMA 5FF1A 3QMOA 4Z0LA 4RRYA 1Q4GA 3FNLA 1EQHA 1CQEA 3PGHA 4MSFA 4PH9A 5F19A 3TGYA 3NT1A 4E1GA 5HPWA 4IG5A 4PNXA 3HS5A 5KIRA 2EFBA 4KVKA 2AYLA 3KRKA 1PGEA 2IPSA 1D2VC 3R4XA 1EQGA 3OLTA 2O86A 1HT5A 3N8WA 4N7AA 3OLUA 4OTJA 3BXIA 3N8XA 4OTYA 3GCKA 2OYUP 4Y55A 3TZIA 4GN6A 4C1MC 3OGWA 4O1ZA 5IKTA 5F1AA 3KRQA 1CVUA 4RUTA 5GH0A 3HS7A 5FIWC 4NT3A 4NJBA 1DNWC 3PY4A 3N8FA 1CX2A 3RKEA 1HT8A 3NIUA 3LN0A 3RR3A 2Z5ZA 3Q9KA 3NAKA 2GJMA 1DDXA 2EHAA 3ZS0C 6COXA 1MYPC 1DIYA 3I6NA 5IKRA 3V6QA 4QYQA 4RRXA 5B72A 1U67A 3QF1A 1PRHA 4FM5A 3N8YB 4QJQA 1D5LC 4DL1C 2PT3A 3UBAA 3LN1A 2E9EA 5JW1A 5COXA 2IKCA 3SXVA 4OEKA 1CXPC 3MDLA 3R5OA 3HS6A 3ERHA 4RRWA 1FE2A 1PTHA 5JVYA 4KVLA 5JVZA 3S4FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QPK A;  5GLS A;  1D7W C;  2OJV A;  3F9P C;  3N8Z A;  3NYH A;  5FDQ A;  3FAQ A;  3N8Y A;  5IKQ A;  4GM7 A;  2OYE P;  2QRB A;  4LJJ A;  3R5Q A;  4COX A;  3ERI A;  1IGZ A;  2NQX A;  2QQT A;  3Q7D A;  5IKV A;  4HHR A;  3NTG A;  2R5L A;  3R55 A;  3ZS1 C;  3GCL A;  1EBV A;  3QL6 A;  4M11 A;  4HHS A;  3N8W B;  3NTB A;  1DNU C;  4RRZ A;  1PXX A;  4M10 A;  1MHL C;  3GCJ A;  3N8V A;  4RS0 A;  3GC1 A;  1IGX A;  4KSZ A;  3MQE A;  3KK6 A;  3QH0 A;  4KVJ A;  2PUM A;  5FF1 A;  3QMO A;  4Z0L A;  4RRY A;  1Q4G A;  3FNL A;  1EQH A;  1CQE A;  3PGH A;  4MSF A;  4PH9 A;  5F19 A;  3TGY A;  3NT1 A;  4E1G A;  5HPW A;  4IG5 A;  4PNX A;  3HS5 A;  5KIR A;  2EFB A;  4KVK A;  2AYL A;  3KRK A;  1PGE A;  2IPS A;  1D2V C;  3R4X A;  1EQG A;  3OLT A;  2O86 A;  1HT5 A;  3N8W A;  4N7A A;  3OLU A;  4OTJ A;  3BXI A;  3N8X A;  4OTY A;  3GCK A;  2OYU P;  4Y55 A;  3TZI A;  4GN6 A;  4C1M C;  3OGW A;  4O1Z A;  5IKT A;  5F1A A;  3KRQ A;  1CVU A;  4RUT A;  5GH0 A;  3HS7 A;  5FIW C;  4NT3 A;  4NJB A;  1DNW C;  3PY4 A;  3N8F A;  1CX2 A;  3RKE A;  1HT8 A;  3NIU A;  3LN0 A;  3RR3 A;  2Z5Z A;  3Q9K A;  3NAK A;  2GJM A;  1DDX A;  2EHA A;  3ZS0 C;  6COX A;  1MYP C;  1DIY A;  3I6N A;  5IKR A;  3V6Q A;  4QYQ A;  4RRX A;  5B72 A;  1U67 A;  3QF1 A;  1PRH A;  4FM5 A;  3N8Y B;  4QJQ A;  1D5L C;  4DL1 C;  2PT3 A;  3UBA A;  3LN1 A;  2E9E A;  5JW1 A;  5COX A;  2IKC A;  3SXV A;  4OEK A;  1CXP C;  3MDL A;  3R5O A;  3HS6 A;  3ERH A;  4RRW A;  1FE2 A;  1PTH A;  5JVY A;  4KVL A;  5JVZ A;  3S4F A; 
#chains in the Genus database with same CATH topology
 2QPK A;  5GLS A;  1D7W C;  2OJV A;  3F9P C;  3N8Z A;  3NYH A;  5FDQ A;  3FAQ A;  3N8Y A;  5IKQ A;  4GM7 A;  2OYE P;  2QRB A;  4LJJ A;  3R5Q A;  4COX A;  3ERI A;  1IGZ A;  2NQX A;  2QQT A;  3Q7D A;  5IKV A;  4HHR A;  3NTG A;  2R5L A;  3R55 A;  3ZS1 C;  3GCL A;  1EBV A;  3QL6 A;  4M11 A;  4HHS A;  3N8W B;  3NTB A;  1DNU C;  4RRZ A;  1PXX A;  4M10 A;  1MHL C;  3GCJ A;  3N8V A;  4RS0 A;  3GC1 A;  1IGX A;  4KSZ A;  3MQE A;  3KK6 A;  3QH0 A;  4KVJ A;  2PUM A;  5FF1 A;  3QMO A;  4Z0L A;  4RRY A;  1Q4G A;  3FNL A;  1EQH A;  1CQE A;  3PGH A;  4MSF A;  4PH9 A;  5F19 A;  3TGY A;  3NT1 A;  4E1G A;  5HPW A;  4IG5 A;  4PNX A;  3HS5 A;  5KIR A;  2EFB A;  4KVK A;  2AYL A;  3KRK A;  1PGE A;  2IPS A;  1D2V C;  3R4X A;  1EQG A;  3OLT A;  2O86 A;  1HT5 A;  3N8W A;  4N7A A;  3OLU A;  4OTJ A;  3BXI A;  3N8X A;  4OTY A;  3GCK A;  2OYU P;  4Y55 A;  3TZI A;  4GN6 A;  4C1M C;  3OGW A;  4O1Z A;  5IKT A;  5F1A A;  3KRQ A;  1CVU A;  4RUT A;  5GH0 A;  3HS7 A;  5FIW C;  4NT3 A;  4NJB A;  1DNW C;  3PY4 A;  3N8F A;  1CX2 A;  3RKE A;  1HT8 A;  3NIU A;  3LN0 A;  3RR3 A;  2Z5Z A;  3Q9K A;  3NAK A;  2GJM A;  1DDX A;  2EHA A;  3ZS0 C;  6COX A;  1MYP C;  1DIY A;  3I6N A;  5IKR A;  3V6Q A;  4QYQ A;  4RRX A;  5B72 A;  1U67 A;  3QF1 A;  1PRH A;  4FM5 A;  3N8Y B;  4QJQ A;  1D5L C;  4DL1 C;  2PT3 A;  3UBA A;  3LN1 A;  2E9E A;  5JW1 A;  5COX A;  2IKC A;  3SXV A;  4OEK A;  1CXP C;  3MDL A;  3R5O A;  3HS6 A;  3ERH A;  4RRW A;  1FE2 A;  1PTH A;  5JVY A;  4KVL A;  5JVZ A;  3S4F A; 
#chains in the Genus database with same CATH homology
 2QPK A;  5GLS A;  1D7W C;  2OJV A;  3F9P C;  3N8Z A;  3NYH A;  5FDQ A;  3FAQ A;  3N8Y A;  5IKQ A;  4GM7 A;  2OYE P;  2QRB A;  4LJJ A;  3R5Q A;  4COX A;  3ERI A;  1IGZ A;  2NQX A;  2QQT A;  3Q7D A;  5IKV A;  4HHR A;  3NTG A;  2R5L A;  3R55 A;  3ZS1 C;  3GCL A;  1EBV A;  3QL6 A;  4M11 A;  4HHS A;  3N8W B;  3NTB A;  1DNU C;  4RRZ A;  1PXX A;  4M10 A;  1MHL C;  3GCJ A;  3N8V A;  4RS0 A;  3GC1 A;  1IGX A;  4KSZ A;  3MQE A;  3KK6 A;  3QH0 A;  4KVJ A;  2PUM A;  5FF1 A;  3QMO A;  4Z0L A;  4RRY A;  1Q4G A;  3FNL A;  1EQH A;  1CQE A;  3PGH A;  4MSF A;  4PH9 A;  5F19 A;  3TGY A;  3NT1 A;  4E1G A;  5HPW A;  4IG5 A;  4PNX A;  3HS5 A;  5KIR A;  2EFB A;  4KVK A;  2AYL A;  3KRK A;  1PGE A;  2IPS A;  1D2V C;  3R4X A;  1EQG A;  3OLT A;  2O86 A;  1HT5 A;  3N8W A;  4N7A A;  3OLU A;  4OTJ A;  3BXI A;  3N8X A;  4OTY A;  3GCK A;  2OYU P;  4Y55 A;  3TZI A;  4GN6 A;  4C1M C;  3OGW A;  4O1Z A;  5IKT A;  5F1A A;  3KRQ A;  1CVU A;  4RUT A;  5GH0 A;  3HS7 A;  5FIW C;  4NT3 A;  4NJB A;  1DNW C;  3PY4 A;  3N8F A;  1CX2 A;  3RKE A;  1HT8 A;  3NIU A;  3LN0 A;  3RR3 A;  2Z5Z A;  3Q9K A;  3NAK A;  2GJM A;  1DDX A;  2EHA A;  3ZS0 C;  6COX A;  1MYP C;  1DIY A;  3I6N A;  5IKR A;  3V6Q A;  4QYQ A;  4RRX A;  5B72 A;  1U67 A;  3QF1 A;  1PRH A;  4FM5 A;  3N8Y B;  4QJQ A;  1D5L C;  4DL1 C;  2PT3 A;  3UBA A;  3LN1 A;  2E9E A;  5JW1 A;  5COX A;  2IKC A;  3SXV A;  4OEK A;  1CXP C;  3MDL A;  3R5O A;  3HS6 A;  3ERH A;  4RRW A;  1FE2 A;  1PTH A;  5JVY A;  4KVL A;  5JVZ A;  3S4F A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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