4KWYA

Crystal structure of a putative lipoprotein (cc_3750) from caulobacter crescentus cb15 at 2.40 a resolution
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
137
structure length
137
Chain Sequence
b'AGVESGLSSIETVAAEGRGGYLLREQLDDALAHRQGSPAAYKLYLSVNEQRFARGVRLDNVANRFELRMSVDWRLLDAKNGAEVHKGRTDVSVTYDSADQPYAAIAAQQDGQERAAAEAARKIQLDLATWLAGKKPA'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of a hypothetical protein (CC_3750) from Caulobacter crescentus CB15 at 2.40 A resolution (PSI Community Target, Shapiro)
rcsb
molecule keywords Putative uncharacterized protein
source organism Caulobacter crescentus
molecule tags Transport protein
total genus 45
structure length 137
sequence length 137
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-05-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04390 LptE Lipopolysaccharide-assembly
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.160.150 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain Lipoprotein like domain 4kwyA00
5TSEA 4KWYA 2N8XA 4RH8A 5IXMB 3BF2A 4N4RB 2R76A 4NHRA 4Q35B 2JXPA 4RHBB 5IV8B
chains in the Genus database with same CATH superfamily
2K4VA 2EZ6A 1YYOA 1IQSA 1PJQA 2ODRC 1N3GA 1GZ6A 2EMAA 2EL6A 4JI0E 2EPLX 2YRHA 2FGGA 2KONA 1WHQA 1X48A 4DR2E 3C6KA 2EOJA 1ZAAC 1T4LB 2N3HA 5ADZA 5KL6A 4K0KE 4O5GA 4R2SA 2B7TA 3KZZA 3BIDA 2EN8A 4AQYE 2J7JA 1PJTA 3EPJA 3QG5C 3IWBA 2ADRA 2HC5A 2EMBA 4WX9A 2R76A 3C6MA 3EPLA 2LCEA 1J5EE 2A25A 2HJJA 4Q35B 2H36X 1A1IA 2EM0A 2JOBA 4WYQB 4DV4E 1UN6B 1N33E 1L4SA 4L5NC 2LVHA 2MKNA 4BHCA 4LF4E 5IXMB 4DMIA 4F2JC 2UXCE 4R2CA 2WCC3 3DF6A 3BF2A 2UU9E 4LF6E 4Q28A 2VQFE 1QNTA 2V85A 2D9HA 3JTZA 1WXRA 4X9JA 2E1MA 2WZOA 2UXBE 3T1YE 5KL2A 1ZU1A 2EOYA 2JR1A 1HNZE 2EL4A 1XMQE 1X5WA 3AUZA 5AE1A 4MLQA 2EPUA 5A2QC 2IHR1 3BBGA 3T1HE 3THOB 3F6HA 2L92A 1YYKA 2RS7A 2JVAA 2DMYA 4MLVA 5T6JA 4BC9A 4ZYHA 2VF1A 4NHRA 2L8TA 4DV1E 1T4NA 3L00A 3OMLA 4N4RB 2R1FA 2LTSA 3RMPA 2DRPA 4LF8E 2F4VE 2EMZA 1PKPA 4KHPE 1YYWA 2DLKA 1YUIA 1JK2A 2RSIA 2LMZA 2ZM6E 4R2PA 2RPCA 4O43A 2LRSA 3H09A 4BS9A 2EQ1A 3LMLA 2BB8A 3VHTB 1UILA 1N36E 1TF6A 1T39A 5AC5A 4LF9E 2EN1A 1SFEA 4M30A 4J8ZA 4NXNE 4DV5E 4WXCA 4GZNC 2PRTA 4DV0E 1EH6A 2MDRA 1IBKE 4JV5E 2EM7A 2YRKA 2RQLA 3MHHC 2EMKA 3FIGA 4B3ME 1KYQA 4R2RA 5A6BA 1WJPA 2JOXA 4M2ZA 5A69A 2EORA 1QU6A 1ZBTA 2L2NA 2KHXA 2LE2A 2V86A 3MHSC 2EMCA 1LLMC 4JI7E 2DLQA 2NUEA 1FKAE 2ENAA 2EOMA 2M9AA 2EN7A 3ADGA 5IT9C 2EN6A 2EN2A 2I13A 1UHZA 4JI2E 4R03A 2EN3A 2YTDA 1A1JA 4JYAE 4F54A 4DV2E 5IWAE 4JI8E 2EOFA 3VK6A 3C4BA 4BHBA 4BC7A 2GPIA 1IQOA 2UUAE 1X6HA 2VRDA 1IMUA 4L8NA 2JPAA 4DR7E 1PDAA 1EH8A 1X47A 4M9VC 2EPPA 1Z1BA 1ZR9A 3HXLA 4KZSA 2ELYA 3J7Yp 4NXME 2NUGA 4DR5E 4X62E 2CTDA 4JI1E 3AV0A 3LLHA 4KWYA 4JI6E 1N34E 3THNA 2V88A 4DR4E 2L2MA 4BBYA 4F9AB 1P47A 2B3TB 3HQ1A 1T38A 5KL4A 2V87A 1B69A 2EN4A 2V8QB 5AC4A 1HNXE 2YRMA 5AASA 4ZYEA 4JI5E 2EQ3A 2L6MA 2YU5A 3VYXA 1A1LA 2ODRD 2NUFA 2EM9A 3J7AG 2F8BA 2YPNA 2YWQA 2FTXB 2LUQA 4JI3E 2EOIA 2EPAA 4TUGA 1G2DC 2LBSB 4X65E 3JAMC 2EPMX 2EP3A 4BCAA 2EMLA 4GKJE 4YY3E 4FK5C 2E5LE 2M1SA 4RHBB 4ZYGA 2V83A 3KWRA 2EOQA 3ZOQB 5CFFE 2JP9A 5LMUE 3UK3C 3TQMA 4GEQB 1F2IG 1RC7A 1BBGA 1BB8A 1EH7A 2EPZA 4R2AA 3P1XA 4WPYA 5FLXC 1YFHA 1YZ9A 2I9IA 4LFBE 2LO3A 2EWLA 2EPXA 3JU0A 5TSEA 1N32E 4YHHE 2DSYA 1STUA 2M7QA 2JY9A 1G2FC 4OX9E 3EPKA 2JYAA 1WRJA 4DR6E 2ENCA 2YTPA 4DR1E 1RQ0A 4DV3E 5LL6R 2YTFA 1A1FA 3F6GA 4O4KA 1TF3A 1X6FA 2DIXA 3HPZA 2EM6A 2MKDA 1MGTA 2EM2A 2YT4A 2ELZA 2RTXA 4DV6E 3OTOE 2HGHA 2EMWA 2YZTA 2EOZA 1DI2A 1WHNA 2EPCA 2DB2A 5BR8E 2LT7A 2EOOA 4DUZE 3J80C 2CSHA 2V89A 4GKKE 2EPOA 4F9CB 2Q8UA 3ADIA 2NA2A 2JWOA 5AE2A 1TN9A 2UUCE 1T4OA 4M0VA 2EPRA 3BGHA 4R2DA 4P7DA 2EMXA 1A1KA 1KJKA 5KL3A 1ZBQA 2WBSA 1BBOA 4LF5E 4WSGA 2EM4A 3M99B 4BMJA 2MC6A 3ADJA 4DUYE 1YSAC 2RSMA 1IBLE 2WBTA 2LJUA 2KOUA 2EMYA 4IJDA 4DKKA 3K6QA 2EE8A 4RH8A 2YTNA 4LTYA 1AH5A 2L2KB 5KL5A 5IV8B 4OOGC 2YTQA 2E72A 3KZYA 2L3CA 2EMFA 2UXDE 4JI4E 3J81C 4WXDA 2L3JA 1EKZA 2EJ4A 2EPKX 1JK1A 2K7IA 4LU9A 2YTGA 4F6NA 2MDGA 2EMGA 2YSOA 2FV4B 1A1HA 2LJHA 4F6MA 2LV2A 2BBGA 5KL7A 4P78A 2M4IA 3DJWA 5AE3A 2EOXA 4X8WA 2EM3A 2L33A 2B9DA 2YTEA 3HPSA 5LMNE 1AAYA 1DQ3A 1YUJA 5LLQA 4HTGA 1I94E 2YTJA 2EM8A 2GHFA 4F9BB 3IWCA 2VE7C 3ECRA 3HTXA 1O0WA 2EMHA 2NABA 5A6BD 2DMIA 2YTIA 1X49A 1J26A 5F3WA 1SR9A 2JXPA 4DV7E 4O24A 4R8OA 1X6EA 3VYYA 2EMIA 5A6KA 4B3RE 1RMDA 2MC5A 4X66E 1HR0E 2N8XA 4LFCE 3IWDA 4LFAE 1DGCA 2EOEA 1IBME 2GLIA 5DNYA 2EOHA 2EM5A 2RS6A 4HEIA 1HNWE 4B3TE 4I8OA 5A6AA 4DR3E 1GTKA 3MSWA 3ADLA 4IS1C 1UBDC 2B7VA 4LF7E 2YTOA 2VQEE 2WBUA 3EPHA 1PJSA 2CPNA 5A6JA 4ZYDA 1X3CA 4X64E 2YU8A 1FJGE 1YPNA 1XMOE 4NZVA 4WFTA 3EQ1A 4TUIA 1XNRE 4B3SE 4R2EA 1NEIA 2EL5A 4WSPA 2CT1A 2LTRA 2YSPA 2EPNA 2LUPB 1A1GA 1MEYC 2UUBE 2DGCA 1GQEA 2N3GA 2HHHE 2ENHA 2G7HA 1XNQE 1NCSA 4R2QA 2EQ0A 2EOSA 3C4TA
chains in the Genus database with same CATH topology
5TSEA 4KWYA 2N8XA 4RH8A 5IXMB 3BF2A 4N4RB 2R76A 4NHRA 4Q35B 2JXPA 4RHBB 5IV8B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5TSE A;  4KWY A;  2N8X A;  4RH8 A;  5IXM B;  3BF2 A;  4N4R B;  2R76 A;  4NHR A;  4Q35 B;  2JXP A;  4RHB B;  5IV8 B; 
#chains in the Genus database with same CATH topology
 2K4V A;  2EZ6 A;  1YYO A;  1IQS A;  1PJQ A;  2ODR C;  1N3G A;  1GZ6 A;  2EMA A;  2EL6 A;  4JI0 E;  2EPL X;  2YRH A;  2FGG A;  2KON A;  1WHQ A;  1X48 A;  4DR2 E;  3C6K A;  2EOJ A;  1ZAA C;  1T4L B;  2N3H A;  5ADZ A;  5KL6 A;  4K0K E;  4O5G A;  4R2S A;  2B7T A;  3KZZ A;  3BID A;  2EN8 A;  4AQY E;  2J7J A;  1PJT A;  3EPJ A;  3QG5 C;  3IWB A;  2ADR A;  2HC5 A;  2EMB A;  4WX9 A;  2R76 A;  3C6M A;  3EPL A;  2LCE A;  1J5E E;  2A25 A;  2HJJ A;  4Q35 B;  2H36 X;  1A1I A;  2EM0 A;  2JOB A;  4WYQ B;  4DV4 E;  1UN6 B;  1N33 E;  1L4S A;  4L5N C;  2LVH A;  2MKN A;  4BHC A;  4LF4 E;  5IXM B;  4DMI A;  4F2J C;  2UXC E;  4R2C A;  2WCC 3;  3DF6 A;  3BF2 A;  2UU9 E;  4LF6 E;  4Q28 A;  2VQF E;  1QNT A;  2V85 A;  2D9H A;  3JTZ A;  1WXR A;  4X9J A;  2E1M A;  2WZO A;  2UXB E;  3T1Y E;  5KL2 A;  1ZU1 A;  2EOY A;  2JR1 A;  1HNZ E;  2EL4 A;  1XMQ E;  1X5W A;  3AUZ A;  5AE1 A;  4MLQ A;  2EPU A;  5A2Q C;  2IHR 1;  3BBG A;  3T1H E;  3THO B;  3F6H A;  2L92 A;  1YYK A;  2RS7 A;  2JVA A;  2DMY A;  4MLV A;  5T6J A;  4BC9 A;  4ZYH A;  2VF1 A;  4NHR A;  2L8T A;  4DV1 E;  1T4N A;  3L00 A;  3OML A;  4N4R B;  2R1F A;  2LTS A;  3RMP A;  2DRP A;  4LF8 E;  2F4V E;  2EMZ A;  1PKP A;  4KHP E;  1YYW A;  2DLK A;  1YUI A;  1JK2 A;  2RSI A;  2LMZ A;  2ZM6 E;  4R2P A;  2RPC A;  4O43 A;  2LRS A;  3H09 A;  4BS9 A;  2EQ1 A;  3LML A;  2BB8 A;  3VHT B;  1UIL A;  1N36 E;  1TF6 A;  1T39 A;  5AC5 A;  4LF9 E;  2EN1 A;  1SFE A;  4M30 A;  4J8Z A;  4NXN E;  4DV5 E;  4WXC A;  4GZN C;  2PRT A;  4DV0 E;  1EH6 A;  2MDR A;  1IBK E;  4JV5 E;  2EM7 A;  2YRK A;  2RQL A;  3MHH C;  2EMK A;  3FIG A;  4B3M E;  1KYQ A;  4R2R A;  5A6B A;  1WJP A;  2JOX A;  4M2Z A;  5A69 A;  2EOR A;  1QU6 A;  1ZBT A;  2L2N A;  2KHX A;  2LE2 A;  2V86 A;  3MHS C;  2EMC A;  1LLM C;  4JI7 E;  2DLQ A;  2NUE A;  1FKA E;  2ENA A;  2EOM A;  2M9A A;  2EN7 A;  3ADG A;  5IT9 C;  2EN6 A;  2EN2 A;  2I13 A;  1UHZ A;  4JI2 E;  4R03 A;  2EN3 A;  2YTD A;  1A1J A;  4JYA E;  4F54 A;  4DV2 E;  5IWA E;  4JI8 E;  2EOF A;  3VK6 A;  3C4B A;  4BHB A;  4BC7 A;  2GPI A;  1IQO A;  2UUA E;  1X6H A;  2VRD A;  1IMU A;  4L8N A;  2JPA A;  4DR7 E;  1PDA A;  1EH8 A;  1X47 A;  4M9V C;  2EPP A;  1Z1B A;  1ZR9 A;  3HXL A;  4KZS A;  2ELY A;  3J7Y p;  4NXM E;  2NUG A;  4DR5 E;  4X62 E;  2CTD A;  4JI1 E;  3AV0 A;  3LLH A;  4KWY A;  4JI6 E;  1N34 E;  3THN A;  2V88 A;  4DR4 E;  2L2M A;  4BBY A;  4F9A B;  1P47 A;  2B3T B;  3HQ1 A;  1T38 A;  5KL4 A;  2V87 A;  1B69 A;  2EN4 A;  2V8Q B;  5AC4 A;  1HNX E;  2YRM A;  5AAS A;  4ZYE A;  4JI5 E;  2EQ3 A;  2L6M A;  2YU5 A;  3VYX A;  1A1L A;  2ODR D;  2NUF A;  2EM9 A;  3J7A G;  2F8B A;  2YPN A;  2YWQ A;  2FTX B;  2LUQ A;  4JI3 E;  2EOI A;  2EPA A;  4TUG A;  1G2D C;  2LBS B;  4X65 E;  3JAM C;  2EPM X;  2EP3 A;  4BCA A;  2EML A;  4GKJ E;  4YY3 E;  4FK5 C;  2E5L E;  2M1S A;  4RHB B;  4ZYG A;  2V83 A;  3KWR A;  2EOQ A;  3ZOQ B;  5CFF E;  2JP9 A;  5LMU E;  3UK3 C;  3TQM A;  4GEQ B;  1F2I G;  1RC7 A;  1BBG A;  1BB8 A;  1EH7 A;  2EPZ A;  4R2A A;  3P1X A;  4WPY A;  5FLX C;  1YFH A;  1YZ9 A;  2I9I A;  4LFB E;  2LO3 A;  2EWL A;  2EPX A;  3JU0 A;  5TSE A;  1N32 E;  4YHH E;  2DSY A;  1STU A;  2M7Q A;  2JY9 A;  1G2F C;  4OX9 E;  3EPK A;  2JYA A;  1WRJ A;  4DR6 E;  2ENC A;  2YTP A;  4DR1 E;  1RQ0 A;  4DV3 E;  5LL6 R;  2YTF A;  1A1F A;  3F6G A;  4O4K A;  1TF3 A;  1X6F A;  2DIX A;  3HPZ A;  2EM6 A;  2MKD A;  1MGT A;  2EM2 A;  2YT4 A;  2ELZ A;  2RTX A;  4DV6 E;  3OTO E;  2HGH A;  2EMW A;  2YZT A;  2EOZ A;  1DI2 A;  1WHN A;  2EPC A;  2DB2 A;  5BR8 E;  2LT7 A;  2EOO A;  4DUZ E;  3J80 C;  2CSH A;  2V89 A;  4GKK E;  2EPO A;  4F9C B;  2Q8U A;  3ADI A;  2NA2 A;  2JWO A;  5AE2 A;  1TN9 A;  2UUC E;  1T4O A;  4M0V A;  2EPR A;  3BGH A;  4R2D A;  4P7D A;  2EMX A;  1A1K A;  1KJK A;  5KL3 A;  1ZBQ A;  2WBS A;  1BBO A;  4LF5 E;  4WSG A;  2EM4 A;  3M99 B;  4BMJ A;  2MC6 A;  3ADJ A;  4DUY E;  1YSA C;  2RSM A;  1IBL E;  2WBT A;  2LJU A;  2KOU A;  2EMY A;  4IJD A;  4DKK A;  3K6Q A;  2EE8 A;  4RH8 A;  2YTN A;  4LTY A;  1AH5 A;  2L2K B;  5KL5 A;  5IV8 B;  4OOG C;  2YTQ A;  2E72 A;  3KZY A;  2L3C A;  2EMF A;  2UXD E;  4JI4 E;  3J81 C;  4WXD A;  2L3J A;  1EKZ A;  2EJ4 A;  2EPK X;  1JK1 A;  2K7I A;  4LU9 A;  2YTG A;  4F6N A;  2MDG A;  2EMG A;  2YSO A;  2FV4 B;  1A1H A;  2LJH A;  4F6M A;  2LV2 A;  2BBG A;  5KL7 A;  4P78 A;  2M4I A;  3DJW A;  5AE3 A;  2EOX A;  4X8W A;  2EM3 A;  2L33 A;  2B9D A;  2YTE A;  3HPS A;  5LMN E;  1AAY A;  1DQ3 A;  1YUJ A;  5LLQ A;  4HTG A;  1I94 E;  2YTJ A;  2EM8 A;  2GHF A;  4F9B B;  3IWC A;  2VE7 C;  3ECR A;  3HTX A;  1O0W A;  2EMH A;  2NAB A;  5A6B D;  2DMI A;  2YTI A;  1X49 A;  1J26 A;  5F3W A;  1SR9 A;  2JXP A;  4DV7 E;  4O24 A;  4R8O A;  1X6E A;  3VYY A;  2EMI A;  5A6K A;  4B3R E;  1RMD A;  2MC5 A;  4X66 E;  1HR0 E;  2N8X A;  4LFC E;  3IWD A;  4LFA E;  1DGC A;  2EOE A;  1IBM E;  2GLI A;  5DNY A;  2EOH A;  2EM5 A;  2RS6 A;  4HEI A;  1HNW E;  4B3T E;  4I8O A;  5A6A A;  4DR3 E;  1GTK A;  3MSW A;  3ADL A;  4IS1 C;  1UBD C;  2B7V A;  4LF7 E;  2YTO A;  2VQE E;  2WBU A;  3EPH A;  1PJS A;  2CPN A;  5A6J A;  4ZYD A;  1X3C A;  4X64 E;  2YU8 A;  1FJG E;  1YPN A;  1XMO E;  4NZV A;  4WFT A;  3EQ1 A;  4TUI A;  1XNR E;  4B3S E;  4R2E A;  1NEI A;  2EL5 A;  4WSP A;  2CT1 A;  2LTR A;  2YSP A;  2EPN A;  2LUP B;  1A1G A;  1MEY C;  2UUB E;  2DGC A;  1GQE A;  2N3G A;  2HHH E;  2ENH A;  2G7H A;  1XNQ E;  1NCS A;  4R2Q A;  2EQ0 A;  2EOS A;  3C4T A; 
#chains in the Genus database with same CATH homology
 5TSE A;  4KWY A;  2N8X A;  4RH8 A;  5IXM B;  3BF2 A;  4N4R B;  2R76 A;  4NHR A;  4Q35 B;  2JXP A;  4RHB B;  5IV8 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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