4KX6C

Plasticity of the quinone-binding site of the complex ii homolog quinol:fumarate reductase
Total Genus 40
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
130
structure length
130
Chain Sequence
b'TTKRKPYVRPMTSTWWKKLPFYRFYMLRLGTAVPAVWFSIELIFGLFALKNGPEAWAGFVDFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVATIVILFVALYW'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords Fumarate reductase flavoprotein subunit
publication title Plasticity of the Quinone-binding Site of the Complex II Homolog Quinol:Fumarate Reductase.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Oxidoreductase
total genus 40
structure length 130
sequence length 130
chains with identical sequence O
ec nomenclature
pdb deposition date 2013-05-24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1300.10 Mainly Alpha Up-down Bundle 3 helical TM bundles of succinate and fumarate reductases Fumarate reductase/succinate dehydrogenase, transmembrane subunit 4kx6C00
4YSXC 1KF6C 2WU2C 4KX6D 1YQ4D 3CIRC 3AE8D 3AE9C 3AEAC 3ABVD 5C3JD 1ZP0C 2B76D 3VRBD 3AE4C 3AE6D 1YQ3D 2WU5C 1ZOYC 4YSZD 1KFYC 3AE3D 3P4SD 2WS3D 3AECC 1E7PC 3VR9C 3AE1C 4YTNC 3AE5D 1NEKD 2H88C 2H89D 4YTMC 1L0VC 4YSYC 3AE2C 3AEEC 3AEBD 3AEGC 5C2TD 2FBWD 2WDRD 3P4QD 4YXDD 3AEDD 4KX6C 1YQ4C 2WP9D 3AE8C 3SFDD 3AE7D 3SFED 2B76C 3VRBC 3AE6C 1YQ3C 2WDVD 2WDQD 4YSZC 4YT0D 1QLBC 2ACZC 4YTPD 3AE3C 3P4SC 2WS3C 2WU5D 3P4PD 3AE5C 3P4RC 1NEKC 2WQYD 3AEFD 1NEND 3VRAD 2H89C 3VR8D 3AEBC 4YTMD 2FBWC 4YSXD 1KF6D 2WU2D 3CIRD 3ABVC 5C3JC 2WDRC 2BS3C 3AE9D 3AEDC 3AEAD 2WP9C 1ZP0D 3AE4D 3SFDC 3AE7C 3SFEC 1ZOYD 1KFYD 2WDVC 2WDQC 3AECD 3VR9D 3AE1D 4YT0C 4YTND 2BS2C 2BS4C 4YTPC 3P4PC 2H88D 2ACZD 5C2TC 1L0VD 3AEFC 2WQYC 4YSYD 3AE2D 1NENC 3AEED 3VR8C 3VRAC 3AEGD 3P4RD 3P4QC 4YXDC
chains in the Genus database with same CATH superfamily
2ZFYA 1TFFA 4YSXC 1KF6C 2WU2C 4KX6D 1YQ4D 3CIRC 3AE8D 3AE9C 3AEAC 3ABVD 5C3JD 4DDGA 1ZP0C 2B76D 3VRBD 3AE4C 3AE6D 1YQ3D 2WU5C 1ZOYC 4YSZD 1KFYC 3AE3D 3P4SD 2WS3D 3AECC 1E7PC 3VR9C 3AE1C 4YTNC 4DHIB 3AE5D 1NEKD 2H88C 2H89D 4YTMC 1L0VC 4YSYC 3AE2C 3AEEC 3AEBD 3AEGC 4DHZA 5C2TD 2FBWD 2WDRD 3P4QD 4YXDD 3AEDD 4KX6C 1YQ4C 2WP9D 3AE8C 3SFDD 3AE7D 3SFED 2B76C 3VRBC 4LDTA 3AE6C 1YQ3C 2WDVD 2WDQD 4YSZC 4YT0D 1QLBC 2ACZC 4YTPD 3AE3C 3P4SC 2WS3C 2WU5D 3P4PD 3AE5C 3P4RC 1NEKC 2WQYD 3AEFD 1NEND 3VRAD 2H89C 3VR8D 3AEBC 4YTMD 4DDIA 2FBWC 4YSXD 1KF6D 2WU2D 3CIRD 3ABVC 5C3JC 2WDRC 2BS3C 3AE9D 3AEDC 3AEAD 4FJVA 2WP9C 1ZP0D 3AE4D 4DHJA 3SFDC 3AE7C 3SFEC 1ZOYD 1KFYD 2WDVC 2WDQC 3AECD 3VR9D 3AE1D 4YT0C 4YTND 2BS2C 4I6LA 3VONA 2BS4C 4YTPC 3P4PC 2H88D 2ACZD 5C2TC 1L0VD 3AEFC 2WQYC 4YSYD 3AE2D 1NENC 3AEED 3VR8C 3VRAC 3AEGD 3P4RD 3P4QC 4YXDC
chains in the Genus database with same CATH topology
4YSXC 1KF6C 2WU2C 4KX6D 1YQ4D 3CIRC 3AE8D 3AE9C 3AEAC 3ABVD 5C3JD 1ZP0C 2B76D 3VRBD 3AE4C 3AE6D 1YQ3D 2WU5C 1ZOYC 4YSZD 1KFYC 3AE3D 3P4SD 2WS3D 3AECC 1E7PC 3VR9C 3AE1C 4YTNC 3AE5D 1NEKD 2H88C 2H89D 4YTMC 1L0VC 4YSYC 3AE2C 3AEEC 3AEBD 3AEGC 5C2TD 2FBWD 2WDRD 3P4QD 4YXDD 3AEDD 4KX6C 1YQ4C 2WP9D 3AE8C 3SFDD 3AE7D 3SFED 2B76C 3VRBC 3AE6C 1YQ3C 2WDVD 2WDQD 4YSZC 4YT0D 1QLBC 2ACZC 4YTPD 3AE3C 3P4SC 2WS3C 2WU5D 3P4PD 3AE5C 3P4RC 1NEKC 2WQYD 3AEFD 1NEND 3VRAD 2H89C 3VR8D 3AEBC 4YTMD 2FBWC 4YSXD 1KF6D 2WU2D 3CIRD 3ABVC 5C3JC 2WDRC 2BS3C 3AE9D 3AEDC 3AEAD 2WP9C 1ZP0D 3AE4D 3SFDC 3AE7C 3SFEC 1ZOYD 1KFYD 2WDVC 2WDQC 3AECD 3VR9D 3AE1D 4YT0C 4YTND 2BS2C 2BS4C 4YTPC 3P4PC 2H88D 2ACZD 5C2TC 1L0VD 3AEFC 2WQYC 4YSYD 3AE2D 1NENC 3AEED 3VR8C 3VRAC 3AEGD 3P4RD 3P4QC 4YXDC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YSX C;  1KF6 C;  2WU2 C;  4KX6 D;  1YQ4 D;  3CIR C;  3AE8 D;  3AE9 C;  3AEA C;  3ABV D;  5C3J D;  1ZP0 C;  2B76 D;  3VRB D;  3AE4 C;  3AE6 D;  1YQ3 D;  2WU5 C;  1ZOY C;  4YSZ D;  1KFY C;  3AE3 D;  3P4S D;  2WS3 D;  3AEC C;  1E7P C;  3VR9 C;  3AE1 C;  4YTN C;  3AE5 D;  1NEK D;  2H88 C;  2H89 D;  4YTM C;  1L0V C;  4YSY C;  3AE2 C;  3AEE C;  3AEB D;  3AEG C;  5C2T D;  2FBW D;  2WDR D;  3P4Q D;  4YXD D;  3AED D;  4KX6 C;  1YQ4 C;  2WP9 D;  3AE8 C;  3SFD D;  3AE7 D;  3SFE D;  2B76 C;  3VRB C;  3AE6 C;  1YQ3 C;  2WDV D;  2WDQ D;  4YSZ C;  4YT0 D;  1QLB C;  2ACZ C;  4YTP D;  3AE3 C;  3P4S C;  2WS3 C;  2WU5 D;  3P4P D;  3AE5 C;  3P4R C;  1NEK C;  2WQY D;  3AEF D;  1NEN D;  3VRA D;  2H89 C;  3VR8 D;  3AEB C;  4YTM D;  2FBW C;  4YSX D;  1KF6 D;  2WU2 D;  3CIR D;  3ABV C;  5C3J C;  2WDR C;  2BS3 C;  3AE9 D;  3AED C;  3AEA D;  2WP9 C;  1ZP0 D;  3AE4 D;  3SFD C;  3AE7 C;  3SFE C;  1ZOY D;  1KFY D;  2WDV C;  2WDQ C;  3AEC D;  3VR9 D;  3AE1 D;  4YT0 C;  4YTN D;  2BS2 C;  2BS4 C;  4YTP C;  3P4P C;  2H88 D;  2ACZ D;  5C2T C;  1L0V D;  3AEF C;  2WQY C;  4YSY D;  3AE2 D;  1NEN C;  3AEE D;  3VR8 C;  3VRA C;  3AEG D;  3P4R D;  3P4Q C;  4YXD C; 
#chains in the Genus database with same CATH topology
 2ZFY A;  1TFF A;  4YSX C;  1KF6 C;  2WU2 C;  4KX6 D;  1YQ4 D;  3CIR C;  3AE8 D;  3AE9 C;  3AEA C;  3ABV D;  5C3J D;  4DDG A;  1ZP0 C;  2B76 D;  3VRB D;  3AE4 C;  3AE6 D;  1YQ3 D;  2WU5 C;  1ZOY C;  4YSZ D;  1KFY C;  3AE3 D;  3P4S D;  2WS3 D;  3AEC C;  1E7P C;  3VR9 C;  3AE1 C;  4YTN C;  4DHI B;  3AE5 D;  1NEK D;  2H88 C;  2H89 D;  4YTM C;  1L0V C;  4YSY C;  3AE2 C;  3AEE C;  3AEB D;  3AEG C;  4DHZ A;  5C2T D;  2FBW D;  2WDR D;  3P4Q D;  4YXD D;  3AED D;  4KX6 C;  1YQ4 C;  2WP9 D;  3AE8 C;  3SFD D;  3AE7 D;  3SFE D;  2B76 C;  3VRB C;  4LDT A;  3AE6 C;  1YQ3 C;  2WDV D;  2WDQ D;  4YSZ C;  4YT0 D;  1QLB C;  2ACZ C;  4YTP D;  3AE3 C;  3P4S C;  2WS3 C;  2WU5 D;  3P4P D;  3AE5 C;  3P4R C;  1NEK C;  2WQY D;  3AEF D;  1NEN D;  3VRA D;  2H89 C;  3VR8 D;  3AEB C;  4YTM D;  4DDI A;  2FBW C;  4YSX D;  1KF6 D;  2WU2 D;  3CIR D;  3ABV C;  5C3J C;  2WDR C;  2BS3 C;  3AE9 D;  3AED C;  3AEA D;  4FJV A;  2WP9 C;  1ZP0 D;  3AE4 D;  4DHJ A;  3SFD C;  3AE7 C;  3SFE C;  1ZOY D;  1KFY D;  2WDV C;  2WDQ C;  3AEC D;  3VR9 D;  3AE1 D;  4YT0 C;  4YTN D;  2BS2 C;  4I6L A;  3VON A;  2BS4 C;  4YTP C;  3P4P C;  2H88 D;  2ACZ D;  5C2T C;  1L0V D;  3AEF C;  2WQY C;  4YSY D;  3AE2 D;  1NEN C;  3AEE D;  3VR8 C;  3VRA C;  3AEG D;  3P4R D;  3P4Q C;  4YXD C; 
#chains in the Genus database with same CATH homology
 4YSX C;  1KF6 C;  2WU2 C;  4KX6 D;  1YQ4 D;  3CIR C;  3AE8 D;  3AE9 C;  3AEA C;  3ABV D;  5C3J D;  1ZP0 C;  2B76 D;  3VRB D;  3AE4 C;  3AE6 D;  1YQ3 D;  2WU5 C;  1ZOY C;  4YSZ D;  1KFY C;  3AE3 D;  3P4S D;  2WS3 D;  3AEC C;  1E7P C;  3VR9 C;  3AE1 C;  4YTN C;  3AE5 D;  1NEK D;  2H88 C;  2H89 D;  4YTM C;  1L0V C;  4YSY C;  3AE2 C;  3AEE C;  3AEB D;  3AEG C;  5C2T D;  2FBW D;  2WDR D;  3P4Q D;  4YXD D;  3AED D;  4KX6 C;  1YQ4 C;  2WP9 D;  3AE8 C;  3SFD D;  3AE7 D;  3SFE D;  2B76 C;  3VRB C;  3AE6 C;  1YQ3 C;  2WDV D;  2WDQ D;  4YSZ C;  4YT0 D;  1QLB C;  2ACZ C;  4YTP D;  3AE3 C;  3P4S C;  2WS3 C;  2WU5 D;  3P4P D;  3AE5 C;  3P4R C;  1NEK C;  2WQY D;  3AEF D;  1NEN D;  3VRA D;  2H89 C;  3VR8 D;  3AEB C;  4YTM D;  2FBW C;  4YSX D;  1KF6 D;  2WU2 D;  3CIR D;  3ABV C;  5C3J C;  2WDR C;  2BS3 C;  3AE9 D;  3AED C;  3AEA D;  2WP9 C;  1ZP0 D;  3AE4 D;  3SFD C;  3AE7 C;  3SFE C;  1ZOY D;  1KFY D;  2WDV C;  2WDQ C;  3AEC D;  3VR9 D;  3AE1 D;  4YT0 C;  4YTN D;  2BS2 C;  2BS4 C;  4YTP C;  3P4P C;  2H88 D;  2ACZ D;  5C2T C;  1L0V D;  3AEF C;  2WQY C;  4YSY D;  3AE2 D;  1NEN C;  3AEE D;  3VR8 C;  3VRA C;  3AEG D;  3P4R D;  3P4Q C;  4YXD C; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...