4L1JA

Three dimensional structure of mutant d143a of human hd domain-containing protein 2, northeast structural genomics consortium (nesg) target hr6723
Total Genus 72
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
72
sequence length
188
structure length
188
Chain Sequence
GARSLLQFLRLVGQLKRVPRTGWVYRNVQRPESVSDHMYRMAVMAMVIKDDRLNKDRCVRLALVHDMAECIVGDIAPADNIPKEEKHRREEEAMKQITQLLPEDLRKELYELWEEYETQSSAEAKFVKQLAQCEMILQASEYEDLEHKPGRLQDFYDSTAGKFNHPEIVQLVSELEAERSTNIAAAAS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords HD domain-containing protein 2
publication title Three dimensional structure of mutant D143A of human HD domain-containing protein 2, Northeast Structural Genomics Consortium (NESG) Target HR6723
rcsb
source organism Homo sapiens
total genus 72
structure length 188
sequence length 188
ec nomenclature
pdb deposition date 2013-06-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13023 HD_3 HD domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3210.10 Mainly Alpha Orthogonal Bundle Hypothetical protein af1432 Hypothetical protein af1432 4l1jA00
4QFYA 4TO3A 4TNXA 4MLMA 4N71A 1XX7A 4BZBA 4TO6A 5AO0A 4N6WA 5TKAA 1YNBA 4TNZA 4LRLA 5AO2A 1VQRA 4Q7HA 4MLNA 4ZWEA 4R8ZA 1U6ZA 3RF0A 2FLOA 4MCWA 4TO5A 4TNYA 1YOYA 2O6IA 3IRHA 4TO0A 2PGSA 4QFZA 4QG2A 5TK8A 4DMBA 4X9EA 3MEMA 4TNQA 4L1JB 5AO3A 4QFXA 2Q14A 4RXSA 5TK9A 3TM8A 4L7EA 3TMCA 4BZCA 3M1TA 3KH1A 2DQBA 3MZOA 2OGIA 4ME4A 4TO4A 4ZWGA 4TO1A 4TNPA 4MZ7A 4L7WA 4MDZA 2PARA 4RXQA 5AO4A 2PAQA 3BG2A 2PQ7A 2HEKA 4TNRA 3U1NA 4TO2A 4QG0A 4RXOA 4QG1A 2PAUA 4RXPA 4RXRA 3TMBA 2O08A 5AO1A 2GZ4A 1VJ7A 3TMDA 4XDSA 5TK7A 2CQZA 3NQWA 3LJXA 5TK6A 4QG4A 3I7AA 3P3QA 3HC1A 3HI0A 3CCGA 3NR1A 4L1JA
chains in the Genus database with same CATH superfamily
4QFYA 4Q2DA 4TO3A 4QQYA 4TNXA 4MLMA 4N71A 1XX7A 4BZBA 4TO6A 5AO0A 4N6WA 5TKAA 1YNBA 4TNZA 4LRLA 5AO2A 1VQRA 4Q7HA 4MLNA 4ZWEA 4R8ZA 1U6ZA 3RF0A 2FLOA 4MCWA 4TO5A 4TNYA 1YOYA 2O6IA 3IRHA 4TO0A 2PGSA 4QFZA 4QG2A 5TK8A 4DMBA 4X9EA 3MEMA 4TNQA 4L1JB 5AO3A 4QFXA 2Q14A 4RXSA 3KQ5A 5TK9A 3GW7A 3TM8A 4L7EA 3TMCA 4BZCA 3M1TA 4Q2CA 3KH1A 2DQBA 3MZOA 2OGIA 4ME4A 4TO4A 3SK9A 4TO1A 4ZWGA 4TNPA 4MZ7A 4L7WA 4MDZA 2PARA 4RXQA 5AO4A 2PAQA 3BG2A 3S4LA 2PQ7A 3SKDA 2HEKA 4TNRA 3U1NA 4TO2A 4QG0A 4RXOA 4QG1A 2PAUA 4RXPA 4RXRA 3TMBA 2O08A 5AO1A 4QQZA 2GZ4A 1VJ7A 3TMDA 4XDSA 4QQXA 5TK7A 2CQZA 3NQWA 3LJXA 5TK6A 4QG4A 3I7AA 3P3QA 4QQWA 3HC1A 3HI0A 3CCGA 3NR1A 4L1JA
chains in the Genus database with same CATH topology
4QFYA 4Q2DA 4TO3A 4QQYA 4TNXA 4MLMA 4N71A 1XX7A 4BZBA 4TO6A 5AO0A 4N6WA 5TKAA 1YNBA 4TNZA 4LRLA 5AO2A 1VQRA 4Q7HA 4MLNA 4ZWEA 4R8ZA 1U6ZA 3RF0A 2FLOA 4MCWA 4TO5A 4TNYA 1YOYA 2O6IA 3IRHA 4TO0A 2PGSA 4QFZA 4QG2A 5TK8A 4DMBA 4X9EA 3MEMA 4TNQA 4L1JB 5AO3A 4QFXA 2Q14A 4RXSA 3KQ5A 5TK9A 3GW7A 3TM8A 4L7EA 3TMCA 4BZCA 3M1TA 4Q2CA 3KH1A 2DQBA 3MZOA 2OGIA 4ME4A 4TO4A 3SK9A 4TO1A 4ZWGA 4TNPA 4MZ7A 4L7WA 4MDZA 2PARA 4RXQA 5AO4A 2PAQA 3BG2A 3S4LA 2PQ7A 3SKDA 2HEKA 4TNRA 3U1NA 4TO2A 4QG0A 4RXOA 4QG1A 2PAUA 4RXPA 4RXRA 3TMBA 2O08A 5AO1A 4QQZA 2GZ4A 1VJ7A 3TMDA 4XDSA 4QQXA 5TK7A 2CQZA 3NQWA 3LJXA 5TK6A 4QG4A 3I7AA 3P3QA 4QQWA 3HC1A 3HI0A 3CCGA 3NR1A 4L1JA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4QFY A;  4TO3 A;  4TNX A;  4MLM A;  4N71 A;  1XX7 A;  4BZB A;  4TO6 A;  5AO0 A;  4N6W A;  5TKA A;  1YNB A;  4TNZ A;  4LRL A;  5AO2 A;  1VQR A;  4Q7H A;  4MLN A;  4ZWE A;  4R8Z A;  1U6Z A;  3RF0 A;  2FLO A;  4MCW A;  4TO5 A;  4TNY A;  1YOY A;  2O6I A;  3IRH A;  4TO0 A;  2PGS A;  4QFZ A;  4QG2 A;  5TK8 A;  4DMB A;  4X9E A;  3MEM A;  4TNQ A;  4L1J B;  5AO3 A;  4QFX A;  2Q14 A;  4RXS A;  5TK9 A;  3TM8 A;  4L7E A;  3TMC A;  4BZC A;  3M1T A;  3KH1 A;  2DQB A;  3MZO A;  2OGI A;  4ME4 A;  4TO4 A;  4ZWG A;  4TO1 A;  4TNP A;  4MZ7 A;  4L7W A;  4MDZ A;  2PAR A;  4RXQ A;  5AO4 A;  2PAQ A;  3BG2 A;  2PQ7 A;  2HEK A;  4TNR A;  3U1N A;  4TO2 A;  4QG0 A;  4RXO A;  4QG1 A;  2PAU A;  4RXP A;  4RXR A;  3TMB A;  2O08 A;  5AO1 A;  2GZ4 A;  1VJ7 A;  3TMD A;  4XDS A;  5TK7 A;  2CQZ A;  3NQW A;  3LJX A;  5TK6 A;  4QG4 A;  3I7A A;  3P3Q A;  3HC1 A;  3HI0 A;  3CCG A;  3NR1 A;  4L1J A; 
#chains in the Genus database with same CATH topology
 4QFY A;  4Q2D A;  4TO3 A;  4QQY A;  4TNX A;  4MLM A;  4N71 A;  1XX7 A;  4BZB A;  4TO6 A;  5AO0 A;  4N6W A;  5TKA A;  1YNB A;  4TNZ A;  4LRL A;  5AO2 A;  1VQR A;  4Q7H A;  4MLN A;  4ZWE A;  4R8Z A;  1U6Z A;  3RF0 A;  2FLO A;  4MCW A;  4TO5 A;  4TNY A;  1YOY A;  2O6I A;  3IRH A;  4TO0 A;  2PGS A;  4QFZ A;  4QG2 A;  5TK8 A;  4DMB A;  4X9E A;  3MEM A;  4TNQ A;  4L1J B;  5AO3 A;  4QFX A;  2Q14 A;  4RXS A;  3KQ5 A;  5TK9 A;  3GW7 A;  3TM8 A;  4L7E A;  3TMC A;  4BZC A;  3M1T A;  4Q2C A;  3KH1 A;  2DQB A;  3MZO A;  2OGI A;  4ME4 A;  4TO4 A;  3SK9 A;  4TO1 A;  4ZWG A;  4TNP A;  4MZ7 A;  4L7W A;  4MDZ A;  2PAR A;  4RXQ A;  5AO4 A;  2PAQ A;  3BG2 A;  3S4L A;  2PQ7 A;  3SKD A;  2HEK A;  4TNR A;  3U1N A;  4TO2 A;  4QG0 A;  4RXO A;  4QG1 A;  2PAU A;  4RXP A;  4RXR A;  3TMB A;  2O08 A;  5AO1 A;  4QQZ A;  2GZ4 A;  1VJ7 A;  3TMD A;  4XDS A;  4QQX A;  5TK7 A;  2CQZ A;  3NQW A;  3LJX A;  5TK6 A;  4QG4 A;  3I7A A;  3P3Q A;  4QQW A;  3HC1 A;  3HI0 A;  3CCG A;  3NR1 A;  4L1J A; 
#chains in the Genus database with same CATH homology
 4QFY A;  4Q2D A;  4TO3 A;  4QQY A;  4TNX A;  4MLM A;  4N71 A;  1XX7 A;  4BZB A;  4TO6 A;  5AO0 A;  4N6W A;  5TKA A;  1YNB A;  4TNZ A;  4LRL A;  5AO2 A;  1VQR A;  4Q7H A;  4MLN A;  4ZWE A;  4R8Z A;  1U6Z A;  3RF0 A;  2FLO A;  4MCW A;  4TO5 A;  4TNY A;  1YOY A;  2O6I A;  3IRH A;  4TO0 A;  2PGS A;  4QFZ A;  4QG2 A;  5TK8 A;  4DMB A;  4X9E A;  3MEM A;  4TNQ A;  4L1J B;  5AO3 A;  4QFX A;  2Q14 A;  4RXS A;  3KQ5 A;  5TK9 A;  3GW7 A;  3TM8 A;  4L7E A;  3TMC A;  4BZC A;  3M1T A;  4Q2C A;  3KH1 A;  2DQB A;  3MZO A;  2OGI A;  4ME4 A;  4TO4 A;  3SK9 A;  4TO1 A;  4ZWG A;  4TNP A;  4MZ7 A;  4L7W A;  4MDZ A;  2PAR A;  4RXQ A;  5AO4 A;  2PAQ A;  3BG2 A;  3S4L A;  2PQ7 A;  3SKD A;  2HEK A;  4TNR A;  3U1N A;  4TO2 A;  4QG0 A;  4RXO A;  4QG1 A;  2PAU A;  4RXP A;  4RXR A;  3TMB A;  2O08 A;  5AO1 A;  4QQZ A;  2GZ4 A;  1VJ7 A;  3TMD A;  4XDS A;  4QQX A;  5TK7 A;  2CQZ A;  3NQW A;  3LJX A;  5TK6 A;  4QG4 A;  3I7A A;  3P3Q A;  4QQW A;  3HC1 A;  3HI0 A;  3CCG A;  3NR1 A;  4L1J A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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