4L1JB

Three dimensional structure of mutant d143a of human hd domain-containing protein 2, northeast structural genomics consortium (nesg) target hr6723
Total Genus 72
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
72
sequence length
195
structure length
194
Chain Sequence
SATFGHGARSLLQFLRLVGQLKRVPRTGWVYRNVQRPESVSDHMYRMAVMAMVIKDDRLNKDRCVRLALVHDMAECIVGDIAPADNIPKEEKHRREEEAMKQITQLLPEDLRKELYELWEEYETQSSAEAKFVKQLAQCEMILQASEYEDLEHKPGRLQDFYDSTAGKFNHPEIVQLVSELEAERSTNIAAAAS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords HD domain-containing protein 2
publication title Three dimensional structure of mutant D143A of human HD domain-containing protein 2, Northeast Structural Genomics Consortium (NESG) Target HR6723
rcsb
source organism Homo sapiens
total genus 72
structure length 194
sequence length 195
ec nomenclature
pdb deposition date 2013-06-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF13023 HD_3 HD domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3210.10 Mainly Alpha Orthogonal Bundle Hypothetical protein af1432 Hypothetical protein af1432 4l1jB00
4MLNA 1U6ZA 4MDZA 4MCWA 1YNBA 3IRHA 4R8ZA 2CQZA 2PQ7A 5TK6A 4TO3A 5TK8A 4QG2A 4L1JA 5AO3A 3TMBA 4TO4A 4BZCA 3NR1A 3CCGA 4Q7HA 4QG1A 4QFYA 2O08A 2O6IA 2Q14A 5AO2A 5AO1A 4ZWGA 3P3QA 4RXQA 4RXOA 4TNPA 3HI0A 2FLOA 2PARA 3M1TA 4N71A 4RXPA 3TMDA 4TNYA 4XDSA 4TNQA 4MZ7A 4L7EA 4TO0A 4MLMA 4TO5A 3MEMA 4L1JB 5TK9A 3HC1A 4QFZA 2PGSA 4TO2A 4QFXA 2PAUA 2HEKA 1YOYA 5TKAA 4N6WA 5AO4A 3U1NA 2PAQA 2DQBA 4TNXA 4DMBA 4LRLA 4RXRA 3NQWA 5AO0A 4TO1A 4ME4A 1XX7A 3MZOA 4BZBA 4TO6A 3LJXA 2GZ4A 1VJ7A 4RXSA 4L7WA 3BG2A 4TNZA 4QG0A 3KH1A 5TK7A 4ZWEA 3TM8A 4X9EA 3RF0A 2OGIA 3I7AA 4QG4A 1VQRA 4TNRA 3TMCA
chains in the Genus database with same CATH superfamily
4MLNA 1U6ZA 4MDZA 4MCWA 1YNBA 3IRHA 4R8ZA 2CQZA 3KQ5A 2PQ7A 5TK6A 4TO3A 5TK8A 4QG2A 4L1JA 5AO3A 3TMBA 3SK9A 4TO4A 4BZCA 3NR1A 3CCGA 4Q7HA 4QG1A 4QFYA 2O08A 3GW7A 2O6IA 4Q2DA 2Q14A 5AO2A 5AO1A 4ZWGA 3P3QA 4RXQA 4RXOA 4TNPA 3HI0A 2FLOA 2PARA 3M1TA 4N71A 4RXPA 3TMDA 4TNYA 4XDSA 4TNQA 4MZ7A 4L7EA 4TO0A 4MLMA 4TO5A 3MEMA 4L1JB 5TK9A 3HC1A 4QFZA 2PGSA 4TO2A 4QFXA 4QQXA 4QQZA 2PAUA 2HEKA 1YOYA 5TKAA 4N6WA 5AO4A 3U1NA 2PAQA 2DQBA 3S4LA 4TNXA 4DMBA 4LRLA 3SKDA 4RXRA 3NQWA 5AO0A 4TO1A 4ME4A 1XX7A 3MZOA 4BZBA 4TO6A 4Q2CA 3LJXA 2GZ4A 4QQYA 4QQWA 1VJ7A 4RXSA 4L7WA 3BG2A 4TNZA 4QG0A 3KH1A 5TK7A 4ZWEA 3TM8A 4X9EA 3RF0A 2OGIA 3I7AA 4QG4A 1VQRA 4TNRA 3TMCA
chains in the Genus database with same CATH topology
4MLNA 1U6ZA 4MDZA 4MCWA 1YNBA 3IRHA 4R8ZA 2CQZA 3KQ5A 2PQ7A 5TK6A 4TO3A 5TK8A 4QG2A 4L1JA 5AO3A 3TMBA 3SK9A 4TO4A 4BZCA 3NR1A 3CCGA 4Q7HA 4QG1A 4QFYA 2O08A 3GW7A 2O6IA 4Q2DA 2Q14A 5AO2A 5AO1A 4ZWGA 3P3QA 4RXQA 4RXOA 4TNPA 3HI0A 2FLOA 2PARA 3M1TA 4N71A 4RXPA 3TMDA 4TNYA 4XDSA 4TNQA 4MZ7A 4L7EA 4TO0A 4MLMA 4TO5A 3MEMA 4L1JB 5TK9A 3HC1A 4QFZA 2PGSA 4TO2A 4QFXA 4QQXA 4QQZA 2PAUA 2HEKA 1YOYA 5TKAA 4N6WA 5AO4A 3U1NA 2PAQA 2DQBA 3S4LA 4TNXA 4DMBA 4LRLA 3SKDA 4RXRA 3NQWA 5AO0A 4TO1A 4ME4A 1XX7A 3MZOA 4BZBA 4TO6A 4Q2CA 3LJXA 2GZ4A 4QQYA 4QQWA 1VJ7A 4RXSA 4L7WA 3BG2A 4TNZA 4QG0A 3KH1A 5TK7A 4ZWEA 3TM8A 4X9EA 3RF0A 2OGIA 3I7AA 4QG4A 1VQRA 4TNRA 3TMCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4MLN A;  1U6Z A;  4MDZ A;  4MCW A;  1YNB A;  3IRH A;  4R8Z A;  2CQZ A;  2PQ7 A;  5TK6 A;  4TO3 A;  5TK8 A;  4QG2 A;  4L1J A;  5AO3 A;  3TMB A;  4TO4 A;  4BZC A;  3NR1 A;  3CCG A;  4Q7H A;  4QG1 A;  4QFY A;  2O08 A;  2O6I A;  2Q14 A;  5AO2 A;  5AO1 A;  4ZWG A;  3P3Q A;  4RXQ A;  4RXO A;  4TNP A;  3HI0 A;  2FLO A;  2PAR A;  3M1T A;  4N71 A;  4RXP A;  3TMD A;  4TNY A;  4XDS A;  4TNQ A;  4MZ7 A;  4L7E A;  4TO0 A;  4MLM A;  4TO5 A;  3MEM A;  4L1J B;  5TK9 A;  3HC1 A;  4QFZ A;  2PGS A;  4TO2 A;  4QFX A;  2PAU A;  2HEK A;  1YOY A;  5TKA A;  4N6W A;  5AO4 A;  3U1N A;  2PAQ A;  2DQB A;  4TNX A;  4DMB A;  4LRL A;  4RXR A;  3NQW A;  5AO0 A;  4TO1 A;  4ME4 A;  1XX7 A;  3MZO A;  4BZB A;  4TO6 A;  3LJX A;  2GZ4 A;  1VJ7 A;  4RXS A;  4L7W A;  3BG2 A;  4TNZ A;  4QG0 A;  3KH1 A;  5TK7 A;  4ZWE A;  3TM8 A;  4X9E A;  3RF0 A;  2OGI A;  3I7A A;  4QG4 A;  1VQR A;  4TNR A;  3TMC A; 
#chains in the Genus database with same CATH topology
 4MLN A;  1U6Z A;  4MDZ A;  4MCW A;  1YNB A;  3IRH A;  4R8Z A;  2CQZ A;  3KQ5 A;  2PQ7 A;  5TK6 A;  4TO3 A;  5TK8 A;  4QG2 A;  4L1J A;  5AO3 A;  3TMB A;  3SK9 A;  4TO4 A;  4BZC A;  3NR1 A;  3CCG A;  4Q7H A;  4QG1 A;  4QFY A;  2O08 A;  3GW7 A;  2O6I A;  4Q2D A;  2Q14 A;  5AO2 A;  5AO1 A;  4ZWG A;  3P3Q A;  4RXQ A;  4RXO A;  4TNP A;  3HI0 A;  2FLO A;  2PAR A;  3M1T A;  4N71 A;  4RXP A;  3TMD A;  4TNY A;  4XDS A;  4TNQ A;  4MZ7 A;  4L7E A;  4TO0 A;  4MLM A;  4TO5 A;  3MEM A;  4L1J B;  5TK9 A;  3HC1 A;  4QFZ A;  2PGS A;  4TO2 A;  4QFX A;  4QQX A;  4QQZ A;  2PAU A;  2HEK A;  1YOY A;  5TKA A;  4N6W A;  5AO4 A;  3U1N A;  2PAQ A;  2DQB A;  3S4L A;  4TNX A;  4DMB A;  4LRL A;  3SKD A;  4RXR A;  3NQW A;  5AO0 A;  4TO1 A;  4ME4 A;  1XX7 A;  3MZO A;  4BZB A;  4TO6 A;  4Q2C A;  3LJX A;  2GZ4 A;  4QQY A;  4QQW A;  1VJ7 A;  4RXS A;  4L7W A;  3BG2 A;  4TNZ A;  4QG0 A;  3KH1 A;  5TK7 A;  4ZWE A;  3TM8 A;  4X9E A;  3RF0 A;  2OGI A;  3I7A A;  4QG4 A;  1VQR A;  4TNR A;  3TMC A; 
#chains in the Genus database with same CATH homology
 4MLN A;  1U6Z A;  4MDZ A;  4MCW A;  1YNB A;  3IRH A;  4R8Z A;  2CQZ A;  3KQ5 A;  2PQ7 A;  5TK6 A;  4TO3 A;  5TK8 A;  4QG2 A;  4L1J A;  5AO3 A;  3TMB A;  3SK9 A;  4TO4 A;  4BZC A;  3NR1 A;  3CCG A;  4Q7H A;  4QG1 A;  4QFY A;  2O08 A;  3GW7 A;  2O6I A;  4Q2D A;  2Q14 A;  5AO2 A;  5AO1 A;  4ZWG A;  3P3Q A;  4RXQ A;  4RXO A;  4TNP A;  3HI0 A;  2FLO A;  2PAR A;  3M1T A;  4N71 A;  4RXP A;  3TMD A;  4TNY A;  4XDS A;  4TNQ A;  4MZ7 A;  4L7E A;  4TO0 A;  4MLM A;  4TO5 A;  3MEM A;  4L1J B;  5TK9 A;  3HC1 A;  4QFZ A;  2PGS A;  4TO2 A;  4QFX A;  4QQX A;  4QQZ A;  2PAU A;  2HEK A;  1YOY A;  5TKA A;  4N6W A;  5AO4 A;  3U1N A;  2PAQ A;  2DQB A;  3S4L A;  4TNX A;  4DMB A;  4LRL A;  3SKD A;  4RXR A;  3NQW A;  5AO0 A;  4TO1 A;  4ME4 A;  1XX7 A;  3MZO A;  4BZB A;  4TO6 A;  4Q2C A;  3LJX A;  2GZ4 A;  4QQY A;  4QQW A;  1VJ7 A;  4RXS A;  4L7W A;  3BG2 A;  4TNZ A;  4QG0 A;  3KH1 A;  5TK7 A;  4ZWE A;  3TM8 A;  4X9E A;  3RF0 A;  2OGI A;  3I7A A;  4QG4 A;  1VQR A;  4TNR A;  3TMC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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